data_3RN9 # _model_server_result.job_id O_HQ0JWBvWJD2j7L6SbFTA _model_server_result.datetime_utc '2025-07-04 08:46:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rn9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":504}' # _entry.id 3RN9 # _exptl.entry_id 3RN9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3RN9 _cell.length_a 182.409 _cell.length_b 182.409 _cell.length_c 67.45 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RN9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? hexameric 6 author_defined_assembly 1 PISA trimeric 3 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L 1 1,2 A,B,C,D,E,F,G,H,I,J,K,L 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 22.483333 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 104 A GLU 104 1_555 E FE FE . A FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc2 A OE2 GLU 134 A GLU 134 1_555 D FE FE . A FE 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc3 A OE1 GLU 134 A GLU 134 1_555 E FE FE . A FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.919 ? metalc ? metalc4 A ND1 HIS 137 A HIS 137 1_555 E FE FE . A FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc5 A OE2 GLU 197 A GLU 197 1_555 D FE FE . A FE 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc6 A OE2 GLU 231 A GLU 231 1_555 D FE FE . A FE 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc7 A NE2 HIS 234 A HIS 234 1_555 D FE FE . A FE 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc8 D FE FE . A FE 499 1_555 F O OH . A OH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc9 D FE FE . A FE 499 1_555 H O1 EDO . A EDO 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc10 E FE FE . A FE 500 1_555 F O OH . A OH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? metalc ? metalc11 E FE FE . A FE 500 1_555 H O1 EDO . A EDO 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc12 E FE FE . A FE 500 1_555 J O HOH . A HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 3RN9 _atom_sites.fract_transf_matrix[1][1] 0.005482 _atom_sites.fract_transf_matrix[1][2] 0.003165 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00633 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014826 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 FE A 1 499 1 FE FE . E 4 FE A 1 500 2 FE FE . F 5 OH A 1 501 275 OH OH . G 6 SO4 A 1 502 1 SO4 SO4 . H 7 EDO A 1 503 1 EDO EDO . I 8 1PE A 1 504 1 1PE 1PE . J 9 HOH A 1 505 1 HOH HOH . J 9 HOH A 2 506 2 HOH HOH . J 9 HOH A 3 507 5 HOH HOH . J 9 HOH A 4 508 7 HOH HOH . J 9 HOH A 5 509 9 HOH HOH . J 9 HOH A 6 510 10 HOH HOH . J 9 HOH A 7 511 11 HOH HOH . J 9 HOH A 8 512 12 HOH HOH . J 9 HOH A 9 513 15 HOH HOH . J 9 HOH A 10 514 16 HOH HOH . J 9 HOH A 11 515 20 HOH HOH . J 9 HOH A 12 516 22 HOH HOH . J 9 HOH A 13 517 23 HOH HOH . J 9 HOH A 14 518 25 HOH HOH . J 9 HOH A 15 519 27 HOH HOH . J 9 HOH A 16 520 28 HOH HOH . J 9 HOH A 17 521 29 HOH HOH . J 9 HOH A 18 522 31 HOH HOH . J 9 HOH A 19 523 33 HOH HOH . J 9 HOH A 20 524 34 HOH HOH . J 9 HOH A 21 525 35 HOH HOH . J 9 HOH A 22 526 36 HOH HOH . J 9 HOH A 23 527 41 HOH HOH . J 9 HOH A 24 528 43 HOH HOH . J 9 HOH A 25 529 45 HOH HOH . J 9 HOH A 26 530 47 HOH HOH . J 9 HOH A 27 531 48 HOH HOH . J 9 HOH A 28 532 52 HOH HOH . J 9 HOH A 29 533 53 HOH HOH . J 9 HOH A 30 534 55 HOH HOH . J 9 HOH A 31 535 57 HOH HOH . J 9 HOH A 32 536 58 HOH HOH . J 9 HOH A 33 537 59 HOH HOH . J 9 HOH A 34 538 63 HOH HOH . J 9 HOH A 35 539 65 HOH HOH . J 9 HOH A 36 540 67 HOH HOH . J 9 HOH A 37 541 71 HOH HOH . J 9 HOH A 38 542 77 HOH HOH . J 9 HOH A 39 543 78 HOH HOH . J 9 HOH A 40 544 79 HOH HOH . J 9 HOH A 41 545 83 HOH HOH . J 9 HOH A 42 546 85 HOH HOH . J 9 HOH A 43 547 86 HOH HOH . J 9 HOH A 44 548 87 HOH HOH . J 9 HOH A 45 549 89 HOH HOH . J 9 HOH A 46 550 91 HOH HOH . J 9 HOH A 47 551 96 HOH HOH . J 9 HOH A 48 552 99 HOH HOH . J 9 HOH A 49 553 100 HOH HOH . J 9 HOH A 50 554 104 HOH HOH . J 9 HOH A 51 555 107 HOH HOH . J 9 HOH A 52 556 108 HOH HOH . J 9 HOH A 53 557 109 HOH HOH . J 9 HOH A 54 558 110 HOH HOH . J 9 HOH A 55 559 111 HOH HOH . J 9 HOH A 56 560 113 HOH HOH . J 9 HOH A 57 561 127 HOH HOH . J 9 HOH A 58 562 129 HOH HOH . J 9 HOH A 59 563 130 HOH HOH . J 9 HOH A 60 564 133 HOH HOH . J 9 HOH A 61 565 144 HOH HOH . J 9 HOH A 62 566 146 HOH HOH . J 9 HOH A 63 567 149 HOH HOH . J 9 HOH A 64 568 150 HOH HOH . J 9 HOH A 65 569 151 HOH HOH . J 9 HOH A 66 570 152 HOH HOH . J 9 HOH A 67 571 157 HOH HOH . J 9 HOH A 68 572 160 HOH HOH . J 9 HOH A 69 573 162 HOH HOH . J 9 HOH A 70 574 163 HOH HOH . J 9 HOH A 71 575 164 HOH HOH . J 9 HOH A 72 576 171 HOH HOH . J 9 HOH A 73 577 175 HOH HOH . J 9 HOH A 74 578 177 HOH HOH . J 9 HOH A 75 579 178 HOH HOH . J 9 HOH A 76 580 180 HOH HOH . J 9 HOH A 77 581 181 HOH HOH . J 9 HOH A 78 582 188 HOH HOH . J 9 HOH A 79 583 189 HOH HOH . J 9 HOH A 80 584 191 HOH HOH . J 9 HOH A 81 585 205 HOH HOH . J 9 HOH A 82 586 209 HOH HOH . J 9 HOH A 83 587 210 HOH HOH . J 9 HOH A 84 588 211 HOH HOH . J 9 HOH A 85 589 215 HOH HOH . J 9 HOH A 86 590 217 HOH HOH . J 9 HOH A 87 591 221 HOH HOH . J 9 HOH A 88 592 227 HOH HOH . J 9 HOH A 89 593 238 HOH HOH . J 9 HOH A 90 594 241 HOH HOH . J 9 HOH A 91 595 243 HOH HOH . J 9 HOH A 92 596 245 HOH HOH . J 9 HOH A 93 597 248 HOH HOH . J 9 HOH A 94 598 258 HOH HOH . J 9 HOH A 95 599 261 HOH HOH . J 9 HOH A 96 600 264 HOH HOH . J 9 HOH A 97 601 267 HOH HOH . J 9 HOH A 98 602 269 HOH HOH . J 9 HOH A 99 603 270 HOH HOH . J 9 HOH A 100 604 271 HOH HOH . J 9 HOH A 101 605 273 HOH HOH . K 9 HOH B 1 331 13 HOH HOH . K 9 HOH B 2 332 14 HOH HOH . K 9 HOH B 3 333 17 HOH HOH . K 9 HOH B 4 334 21 HOH HOH . K 9 HOH B 5 335 24 HOH HOH . K 9 HOH B 6 336 30 HOH HOH . K 9 HOH B 7 337 32 HOH HOH . K 9 HOH B 8 338 37 HOH HOH . K 9 HOH B 9 339 39 HOH HOH . K 9 HOH B 10 340 42 HOH HOH . K 9 HOH B 11 341 44 HOH HOH . K 9 HOH B 12 342 46 HOH HOH . K 9 HOH B 13 343 49 HOH HOH . K 9 HOH B 14 344 50 HOH HOH . K 9 HOH B 15 345 51 HOH HOH . K 9 HOH B 16 346 54 HOH HOH . K 9 HOH B 17 347 60 HOH HOH . K 9 HOH B 18 348 61 HOH HOH . K 9 HOH B 19 349 62 HOH HOH . K 9 HOH B 20 350 64 HOH HOH . K 9 HOH B 21 351 69 HOH HOH . K 9 HOH B 22 352 72 HOH HOH . K 9 HOH B 23 353 73 HOH HOH . K 9 HOH B 24 354 75 HOH HOH . K 9 HOH B 25 355 76 HOH HOH . K 9 HOH B 26 356 81 HOH HOH . K 9 HOH B 27 357 88 HOH HOH . K 9 HOH B 28 358 90 HOH HOH . K 9 HOH B 29 359 95 HOH HOH . K 9 HOH B 30 360 98 HOH HOH . K 9 HOH B 31 361 101 HOH HOH . K 9 HOH B 32 362 105 HOH HOH . K 9 HOH B 33 363 115 HOH HOH . K 9 HOH B 34 364 117 HOH HOH . K 9 HOH B 35 365 119 HOH HOH . K 9 HOH B 36 366 120 HOH HOH . K 9 HOH B 37 367 121 HOH HOH . K 9 HOH B 38 368 122 HOH HOH . K 9 HOH B 39 369 124 HOH HOH . K 9 HOH B 40 370 126 HOH HOH . K 9 HOH B 41 371 132 HOH HOH . K 9 HOH B 42 372 138 HOH HOH . K 9 HOH B 43 373 139 HOH HOH . K 9 HOH B 44 374 140 HOH HOH . K 9 HOH B 45 375 141 HOH HOH . K 9 HOH B 46 376 142 HOH HOH . K 9 HOH B 47 377 143 HOH HOH . K 9 HOH B 48 378 147 HOH HOH . K 9 HOH B 49 379 156 HOH HOH . K 9 HOH B 50 380 158 HOH HOH . K 9 HOH B 51 381 159 HOH HOH . K 9 HOH B 52 382 165 HOH HOH . K 9 HOH B 53 383 168 HOH HOH . K 9 HOH B 54 384 174 HOH HOH . K 9 HOH B 55 385 176 HOH HOH . K 9 HOH B 56 386 179 HOH HOH . K 9 HOH B 57 387 184 HOH HOH . K 9 HOH B 58 388 202 HOH HOH . K 9 HOH B 59 389 208 HOH HOH . K 9 HOH B 60 390 212 HOH HOH . K 9 HOH B 61 391 216 HOH HOH . K 9 HOH B 62 392 218 HOH HOH . K 9 HOH B 63 393 232 HOH HOH . K 9 HOH B 64 394 233 HOH HOH . K 9 HOH B 65 395 234 HOH HOH . K 9 HOH B 66 396 236 HOH HOH . K 9 HOH B 67 397 240 HOH HOH . K 9 HOH B 68 398 254 HOH HOH . K 9 HOH B 69 399 256 HOH HOH . K 9 HOH B 70 400 260 HOH HOH . K 9 HOH B 71 401 265 HOH HOH . K 9 HOH B 72 402 266 HOH HOH . L 9 HOH C 1 87 8 HOH HOH . L 9 HOH C 2 88 26 HOH HOH . L 9 HOH C 3 89 38 HOH HOH . L 9 HOH C 4 90 56 HOH HOH . L 9 HOH C 5 91 82 HOH HOH . L 9 HOH C 6 128 128 HOH HOH . L 9 HOH C 7 135 135 HOH HOH . L 9 HOH C 8 185 185 HOH HOH . L 9 HOH C 9 186 186 HOH HOH . L 9 HOH C 10 213 213 HOH HOH . L 9 HOH C 11 253 253 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . I 8 -8.777 -53.041 12.085 1 60.96 ? OH2 1PE 504 A 1 HETATM 2 C C12 1PE . . . I 8 -8.866 -54.481 12.129 1 60.76 ? C12 1PE 504 A 1 HETATM 3 C C22 1PE . . . I 8 -9.378 -55.041 10.796 1 60.02 ? C22 1PE 504 A 1 HETATM 4 O OH3 1PE . . . I 8 -9.136 -56.459 10.681 1 58.04 ? OH3 1PE 504 A 1 HETATM 5 C C13 1PE . . . I 8 -8.907 -58.453 9.214 1 53.12 ? C13 1PE 504 A 1 HETATM 6 C C23 1PE . . . I 8 -9.113 -56.935 9.314 1 55.62 ? C23 1PE 504 A 1 HETATM 7 O OH4 1PE . . . I 8 -8.944 -58.94 7.863 1 50.5 ? OH4 1PE 504 A 1 HETATM 8 C C14 1PE . . . I 8 -8.898 -60.969 6.41 1 49.89 ? C14 1PE 504 A 1 HETATM 9 C C24 1PE . . . I 8 -9.089 -60.379 7.815 1 50.18 ? C24 1PE 504 A 1 HETATM 10 O OH5 1PE . . . I 8 -7.984 -62.096 6.366 1 49.27 ? OH5 1PE 504 A 1 HETATM 11 C C15 1PE . . . I 8 -6.315 -62.448 4.539 1 46.14 ? C15 1PE 504 A 1 HETATM 12 C C25 1PE . . . I 8 -7.756 -62.612 5.03 1 47.51 ? C25 1PE 504 A 1 HETATM 13 O OH6 1PE . . . I 8 -6.184 -61.992 3.167 1 45.24 ? OH6 1PE 504 A 1 HETATM 14 C C16 1PE . . . I 8 -4.565 -60.55 1.795 1 44.5 ? C16 1PE 504 A 1 HETATM 15 C C26 1PE . . . I 8 -5.404 -60.758 3.068 1 45.02 ? C26 1PE 504 A 1 HETATM 16 O OH7 1PE . . . I 8 -3.941 -59.248 1.792 1 41.29 ? OH7 1PE 504 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 16 #