data_3RNB
#
_model_server_result.job_id            sQSj9o4z3bP4z51gmEc9Fg 
_model_server_result.datetime_utc      '2025-07-03 01:15:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3rnb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":500}' 
#
_entry.id    3RNB 
#
_exptl.entry_id    3RNB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              55.845 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FE (III) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3RNB 
_cell.length_a            183.162 
_cell.length_b            183.162 
_cell.length_c            68.081 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3RNB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? hexameric 6 author_defined_assembly 1 
PISA trimeric 3 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L 1 1,2 
A,B,C,D,E,F,G,H,I,J,K,L 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 0 -22.693667 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 E N N 
? 5 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 104 A GLU 104 1_555 E FE FE . A FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
metalc ? metalc2 A OE1 GLU 134 A GLU 134 1_555 E FE FE . A FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
metalc ? metalc3 A OE2 GLU 134 A GLU 134 1_555 F FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? 
metalc ? metalc4 A ND1 HIS 137 A HIS 137 1_555 E FE FE . A FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? 
metalc ? metalc5 A OE2 GLU 197 A GLU 197 1_555 F FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
metalc ? metalc6 A OE2 GLU 231 A GLU 231 1_555 F FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? 
metalc ? metalc7 A NE2 HIS 234 A HIS 234 1_555 F FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? 
metalc ? metalc8 D O OH . A OH 499 1_555 E FE FE . A FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc9 D O OH . A OH 499 1_555 F FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? 
metalc ? metalc10 E FE FE . A FE 500 1_555 J O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
metalc ? metalc11 E FE FE . A FE 500 1_555 J O HOH . A HOH 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? 
metalc ? metalc12 F FE FE . A FE 501 1_555 J O HOH . A HOH 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? 
#
_chem_comp.formula           'Fe 3' 
_chem_comp.formula_weight    55.845 
_chem_comp.id                FE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FE (III) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3RNB 
_atom_sites.fract_transf_matrix[1][1]    0.00546 
_atom_sites.fract_transf_matrix[1][2]    0.003152 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006304 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014688 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 OH A 1 499 1 OH OH . 
E 5 FE A 1 500 3 FE FE . 
F 5 FE A 1 501 4 FE FE . 
G 6 SO4 A 1 502 1 SO4 SO4 . 
H 6 SO4 A 1 503 3 SO4 SO4 . 
I 6 SO4 B 1 331 2 SO4 SO4 . 
J 7 HOH A 1 504 1 HOH HOH . 
J 7 HOH A 2 505 2 HOH HOH . 
J 7 HOH A 3 506 3 HOH HOH . 
J 7 HOH A 4 507 8 HOH HOH . 
J 7 HOH A 5 508 13 HOH HOH . 
J 7 HOH A 6 509 17 HOH HOH . 
J 7 HOH A 7 510 18 HOH HOH . 
J 7 HOH A 8 511 19 HOH HOH . 
J 7 HOH A 9 512 21 HOH HOH . 
J 7 HOH A 10 513 22 HOH HOH . 
J 7 HOH A 11 514 25 HOH HOH . 
J 7 HOH A 12 515 32 HOH HOH . 
J 7 HOH A 13 516 34 HOH HOH . 
J 7 HOH A 14 517 36 HOH HOH . 
J 7 HOH A 15 518 38 HOH HOH . 
J 7 HOH A 16 519 42 HOH HOH . 
J 7 HOH A 17 520 43 HOH HOH . 
J 7 HOH A 18 521 44 HOH HOH . 
J 7 HOH A 19 522 46 HOH HOH . 
J 7 HOH A 20 523 51 HOH HOH . 
J 7 HOH A 21 524 53 HOH HOH . 
J 7 HOH A 22 525 54 HOH HOH . 
J 7 HOH A 23 526 55 HOH HOH . 
J 7 HOH A 24 527 56 HOH HOH . 
J 7 HOH A 25 528 57 HOH HOH . 
J 7 HOH A 26 529 63 HOH HOH . 
J 7 HOH A 27 530 65 HOH HOH . 
J 7 HOH A 28 531 67 HOH HOH . 
J 7 HOH A 29 532 73 HOH HOH . 
J 7 HOH A 30 533 75 HOH HOH . 
J 7 HOH A 31 534 78 HOH HOH . 
J 7 HOH A 32 535 79 HOH HOH . 
J 7 HOH A 33 536 83 HOH HOH . 
J 7 HOH A 34 537 85 HOH HOH . 
J 7 HOH A 35 538 87 HOH HOH . 
J 7 HOH A 36 539 90 HOH HOH . 
J 7 HOH A 37 540 92 HOH HOH . 
J 7 HOH A 38 541 93 HOH HOH . 
J 7 HOH A 39 542 95 HOH HOH . 
J 7 HOH A 40 543 98 HOH HOH . 
J 7 HOH A 41 544 99 HOH HOH . 
J 7 HOH A 42 545 104 HOH HOH . 
J 7 HOH A 43 546 105 HOH HOH . 
J 7 HOH A 44 547 106 HOH HOH . 
J 7 HOH A 45 548 109 HOH HOH . 
J 7 HOH A 46 549 114 HOH HOH . 
J 7 HOH A 47 550 115 HOH HOH . 
J 7 HOH A 48 551 125 HOH HOH . 
J 7 HOH A 49 552 127 HOH HOH . 
J 7 HOH A 50 553 134 HOH HOH . 
J 7 HOH A 51 554 140 HOH HOH . 
J 7 HOH A 52 555 141 HOH HOH . 
J 7 HOH A 53 556 146 HOH HOH . 
J 7 HOH A 54 557 151 HOH HOH . 
J 7 HOH A 55 558 154 HOH HOH . 
J 7 HOH A 56 559 158 HOH HOH . 
J 7 HOH A 57 560 166 HOH HOH . 
J 7 HOH A 58 561 167 HOH HOH . 
J 7 HOH A 59 562 168 HOH HOH . 
J 7 HOH A 60 563 170 HOH HOH . 
J 7 HOH A 61 564 171 HOH HOH . 
J 7 HOH A 62 565 173 HOH HOH . 
J 7 HOH A 63 566 174 HOH HOH . 
J 7 HOH A 64 567 179 HOH HOH . 
J 7 HOH A 65 568 180 HOH HOH . 
J 7 HOH A 66 569 181 HOH HOH . 
J 7 HOH A 67 570 189 HOH HOH . 
J 7 HOH A 68 571 190 HOH HOH . 
J 7 HOH A 69 572 192 HOH HOH . 
J 7 HOH A 70 573 193 HOH HOH . 
J 7 HOH A 71 574 195 HOH HOH . 
J 7 HOH A 72 575 196 HOH HOH . 
J 7 HOH A 73 576 197 HOH HOH . 
J 7 HOH A 74 577 203 HOH HOH . 
J 7 HOH A 75 578 205 HOH HOH . 
J 7 HOH A 76 579 206 HOH HOH . 
J 7 HOH A 77 580 208 HOH HOH . 
J 7 HOH A 78 581 2 HOH HOH . 
K 7 HOH B 1 332 4 HOH HOH . 
K 7 HOH B 2 333 5 HOH HOH . 
K 7 HOH B 3 334 6 HOH HOH . 
K 7 HOH B 4 335 10 HOH HOH . 
K 7 HOH B 5 336 12 HOH HOH . 
K 7 HOH B 6 337 14 HOH HOH . 
K 7 HOH B 7 338 15 HOH HOH . 
K 7 HOH B 8 339 20 HOH HOH . 
K 7 HOH B 9 340 23 HOH HOH . 
K 7 HOH B 10 341 24 HOH HOH . 
K 7 HOH B 11 342 26 HOH HOH . 
K 7 HOH B 12 343 27 HOH HOH . 
K 7 HOH B 13 344 29 HOH HOH . 
K 7 HOH B 14 345 30 HOH HOH . 
K 7 HOH B 15 346 31 HOH HOH . 
K 7 HOH B 16 347 33 HOH HOH . 
K 7 HOH B 17 348 35 HOH HOH . 
K 7 HOH B 18 349 41 HOH HOH . 
K 7 HOH B 19 350 45 HOH HOH . 
K 7 HOH B 20 351 47 HOH HOH . 
K 7 HOH B 21 352 60 HOH HOH . 
K 7 HOH B 22 353 61 HOH HOH . 
K 7 HOH B 23 354 62 HOH HOH . 
K 7 HOH B 24 355 64 HOH HOH . 
K 7 HOH B 25 356 68 HOH HOH . 
K 7 HOH B 26 357 69 HOH HOH . 
K 7 HOH B 27 358 71 HOH HOH . 
K 7 HOH B 28 359 76 HOH HOH . 
K 7 HOH B 29 360 81 HOH HOH . 
K 7 HOH B 30 361 82 HOH HOH . 
K 7 HOH B 31 362 84 HOH HOH . 
K 7 HOH B 32 363 86 HOH HOH . 
K 7 HOH B 33 364 88 HOH HOH . 
K 7 HOH B 34 365 89 HOH HOH . 
K 7 HOH B 35 366 96 HOH HOH . 
K 7 HOH B 36 367 97 HOH HOH . 
K 7 HOH B 37 368 100 HOH HOH . 
K 7 HOH B 38 369 107 HOH HOH . 
K 7 HOH B 39 370 110 HOH HOH . 
K 7 HOH B 40 371 122 HOH HOH . 
K 7 HOH B 41 372 124 HOH HOH . 
K 7 HOH B 42 373 126 HOH HOH . 
K 7 HOH B 43 374 128 HOH HOH . 
K 7 HOH B 44 375 131 HOH HOH . 
K 7 HOH B 45 376 132 HOH HOH . 
K 7 HOH B 46 377 133 HOH HOH . 
K 7 HOH B 47 378 135 HOH HOH . 
K 7 HOH B 48 379 136 HOH HOH . 
K 7 HOH B 49 380 137 HOH HOH . 
K 7 HOH B 50 381 142 HOH HOH . 
K 7 HOH B 51 382 145 HOH HOH . 
K 7 HOH B 52 383 147 HOH HOH . 
K 7 HOH B 53 384 148 HOH HOH . 
K 7 HOH B 54 385 149 HOH HOH . 
K 7 HOH B 55 386 150 HOH HOH . 
K 7 HOH B 56 387 160 HOH HOH . 
K 7 HOH B 57 388 161 HOH HOH . 
K 7 HOH B 58 389 162 HOH HOH . 
K 7 HOH B 59 390 163 HOH HOH . 
K 7 HOH B 60 391 169 HOH HOH . 
K 7 HOH B 61 392 178 HOH HOH . 
K 7 HOH B 62 393 212 HOH HOH . 
K 7 HOH B 63 394 213 HOH HOH . 
K 7 HOH B 64 395 214 HOH HOH . 
K 7 HOH B 65 396 215 HOH HOH . 
L 7 HOH C 1 87 50 HOH HOH . 
L 7 HOH C 2 88 52 HOH HOH . 
L 7 HOH C 3 89 80 HOH HOH . 
L 7 HOH C 4 112 112 HOH HOH . 
L 7 HOH C 5 129 129 HOH HOH . 
L 7 HOH C 6 204 204 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           FE 
_atom_site.label_atom_id         FE 
_atom_site.label_comp_id         FE 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               -71.012 
_atom_site.Cartn_y               -17.762 
_atom_site.Cartn_z               -0.682 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        38.16 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          FE 
_atom_site.auth_comp_id          FE 
_atom_site.auth_seq_id           500 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           328 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#