data_3RNC # _model_server_result.job_id 4RcH7DoSlvRmxY0cJzc9Dw _model_server_result.datetime_utc '2025-07-07 19:57:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rnc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":502}' # _entry.id 3RNC # _exptl.entry_id 3RNC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3RNC _cell.length_a 182.571 _cell.length_b 182.571 _cell.length_c 67.047 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RNC _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? hexameric 6 author_defined_assembly 1 PISA trimeric 3 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1,2 A,B,C,D,E,F,G,H,I,J 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 22.349 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 104 A GLU 104 1_555 E FE FE . A FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc2 A OE2 GLU 134 A GLU 134 1_555 D FE FE . A FE 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc3 A OE1 GLU 134 A GLU 134 1_555 E FE FE . A FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.869 ? metalc ? metalc4 A ND1 HIS 137 A HIS 137 1_555 E FE FE . A FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc5 A OE2 GLU 197 A GLU 197 1_555 D FE FE . A FE 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.774 ? metalc ? metalc6 A OE2 GLU 231 A GLU 231 1_555 D FE FE . A FE 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc7 A NE2 HIS 234 A HIS 234 1_555 D FE FE . A FE 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc8 D FE FE . A FE 499 1_555 F O OH . A OH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.777 ? metalc ? metalc9 D FE FE . A FE 499 1_555 G O1 EDO . A EDO 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc10 E FE FE . A FE 500 1_555 F O OH . A OH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc11 E FE FE . A FE 500 1_555 G O1 EDO . A EDO 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc12 E FE FE . A FE 500 1_555 H O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.763 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3RNC _atom_sites.fract_transf_matrix[1][1] 0.005477 _atom_sites.fract_transf_matrix[1][2] 0.003162 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006325 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014915 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 FE A 1 499 1 FE FE . E 4 FE A 1 500 2 FE FE . F 5 OH A 1 501 53 OH OH . G 6 EDO A 1 502 1 EDO EDO . H 7 HOH A 1 503 1 HOH HOH . H 7 HOH A 2 504 2 HOH HOH . H 7 HOH A 3 505 5 HOH HOH . H 7 HOH A 4 506 7 HOH HOH . H 7 HOH A 5 507 10 HOH HOH . H 7 HOH A 6 508 11 HOH HOH . H 7 HOH A 7 509 13 HOH HOH . H 7 HOH A 8 510 16 HOH HOH . H 7 HOH A 9 511 19 HOH HOH . H 7 HOH A 10 512 27 HOH HOH . H 7 HOH A 11 513 29 HOH HOH . H 7 HOH A 12 514 30 HOH HOH . H 7 HOH A 13 515 37 HOH HOH . H 7 HOH A 14 516 41 HOH HOH . H 7 HOH A 15 517 47 HOH HOH . H 7 HOH A 16 518 48 HOH HOH . H 7 HOH A 17 519 49 HOH HOH . H 7 HOH A 18 520 50 HOH HOH . H 7 HOH A 19 521 51 HOH HOH . I 7 HOH B 1 331 4 HOH HOH . I 7 HOH B 2 332 6 HOH HOH . I 7 HOH B 3 333 9 HOH HOH . I 7 HOH B 4 334 12 HOH HOH . I 7 HOH B 5 335 14 HOH HOH . I 7 HOH B 6 336 15 HOH HOH . I 7 HOH B 7 337 17 HOH HOH . I 7 HOH B 8 338 18 HOH HOH . I 7 HOH B 9 339 22 HOH HOH . I 7 HOH B 10 340 23 HOH HOH . I 7 HOH B 11 341 24 HOH HOH . I 7 HOH B 12 342 26 HOH HOH . I 7 HOH B 13 343 31 HOH HOH . I 7 HOH B 14 344 33 HOH HOH . I 7 HOH B 15 345 34 HOH HOH . I 7 HOH B 16 346 35 HOH HOH . I 7 HOH B 17 347 36 HOH HOH . I 7 HOH B 18 348 39 HOH HOH . I 7 HOH B 19 349 42 HOH HOH . I 7 HOH B 20 350 46 HOH HOH . J 7 HOH C 1 87 8 HOH HOH . J 7 HOH C 2 88 21 HOH HOH . J 7 HOH C 3 89 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 6 16.993 -71.104 -1.787 1 66.8 ? C1 EDO 502 A 1 HETATM 2 O O1 EDO . . . G 6 18.165 -70.644 -1.045 1 66.82 ? O1 EDO 502 A 1 HETATM 3 C C2 EDO . . . G 6 15.638 -70.778 -1.121 1 67.17 ? C2 EDO 502 A 1 HETATM 4 O O2 EDO . . . G 6 15.446 -69.365 -0.87 1 67.08 ? O2 EDO 502 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 137 _model_server_stats.create_model_time_ms 59 _model_server_stats.query_time_ms 372 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #