data_3RNE
#
_model_server_result.job_id            -M9WTH04oGLcxL12SUmk1w 
_model_server_result.datetime_utc      '2024-12-18 16:04:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3rne 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":499}' 
#
_entry.id    3RNE 
#
_exptl.entry_id    3RNE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              55.845 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FE (III) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3RNE 
_cell.length_a            182.984 
_cell.length_b            182.984 
_cell.length_c            67.976 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3RNE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? hexameric 6 author_defined_assembly 1 
PISA trimeric 3 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J 1 1,2 
A,B,C,D,E,F,G,H,I,J 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 x-y,-y,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 0 45.317333 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 104 A GLU 104 1_555 E FE FE . A FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? 
metalc ? metalc2 A OE2 GLU 134 A GLU 134 1_555 D FE FE . A FE 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
metalc ? metalc3 A OE1 GLU 134 A GLU 134 1_555 E FE FE . A FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? 
metalc ? metalc4 A ND1 HIS 137 A HIS 137 1_555 E FE FE . A FE 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? 
metalc ? metalc5 A OE2 GLU 197 A GLU 197 1_555 D FE FE . A FE 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
metalc ? metalc6 A OE2 GLU 231 A GLU 231 1_555 D FE FE . A FE 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? 
metalc ? metalc7 A NE2 HIS 234 A HIS 234 1_555 D FE FE . A FE 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc8 D FE FE . A FE 499 1_555 F O OH . A OH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? 
metalc ? metalc9 D FE FE . A FE 499 1_555 G O OH . A OH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
metalc ? metalc10 E FE FE . A FE 500 1_555 F O OH . A OH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? 
metalc ? metalc11 E FE FE . A FE 500 1_555 G O OH . A OH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? 
metalc ? metalc12 E FE FE . A FE 500 1_555 H O HOH . A HOH 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? 
#
_chem_comp.formula           'Fe 3' 
_chem_comp.formula_weight    55.845 
_chem_comp.id                FE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FE (III) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3RNE 
_atom_sites.fract_transf_matrix[1][1]    0.005465 
_atom_sites.fract_transf_matrix[1][2]    0.003155 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00631 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014711 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 FE A 1 499 1 FE FE . 
E 4 FE A 1 500 2 FE FE . 
F 5 OH A 1 501 1 OH OH . 
G 5 OH A 1 502 2 OH OH . 
H 6 HOH A 1 503 1 HOH HOH . 
H 6 HOH A 2 504 2 HOH HOH . 
H 6 HOH A 3 505 3 HOH HOH . 
H 6 HOH A 4 506 4 HOH HOH . 
H 6 HOH A 5 507 8 HOH HOH . 
H 6 HOH A 6 508 16 HOH HOH . 
H 6 HOH A 7 509 17 HOH HOH . 
H 6 HOH A 8 510 19 HOH HOH . 
H 6 HOH A 9 511 21 HOH HOH . 
H 6 HOH A 10 512 22 HOH HOH . 
H 6 HOH A 11 513 24 HOH HOH . 
H 6 HOH A 12 514 26 HOH HOH . 
H 6 HOH A 13 515 29 HOH HOH . 
H 6 HOH A 14 516 31 HOH HOH . 
H 6 HOH A 15 517 32 HOH HOH . 
H 6 HOH A 16 518 33 HOH HOH . 
H 6 HOH A 17 519 34 HOH HOH . 
H 6 HOH A 18 520 40 HOH HOH . 
H 6 HOH A 19 521 41 HOH HOH . 
H 6 HOH A 20 522 42 HOH HOH . 
H 6 HOH A 21 523 44 HOH HOH . 
H 6 HOH A 22 524 46 HOH HOH . 
H 6 HOH A 23 525 47 HOH HOH . 
H 6 HOH A 24 526 50 HOH HOH . 
H 6 HOH A 25 527 55 HOH HOH . 
H 6 HOH A 26 528 59 HOH HOH . 
H 6 HOH A 27 529 60 HOH HOH . 
H 6 HOH A 28 530 64 HOH HOH . 
H 6 HOH A 29 531 65 HOH HOH . 
H 6 HOH A 30 532 67 HOH HOH . 
H 6 HOH A 31 533 69 HOH HOH . 
H 6 HOH A 32 534 70 HOH HOH . 
H 6 HOH A 33 535 71 HOH HOH . 
H 6 HOH A 34 536 73 HOH HOH . 
H 6 HOH A 35 537 74 HOH HOH . 
H 6 HOH A 36 538 77 HOH HOH . 
H 6 HOH A 37 539 78 HOH HOH . 
H 6 HOH A 38 540 81 HOH HOH . 
H 6 HOH A 39 541 83 HOH HOH . 
H 6 HOH A 40 542 84 HOH HOH . 
H 6 HOH A 41 543 85 HOH HOH . 
H 6 HOH A 42 544 86 HOH HOH . 
H 6 HOH A 43 545 87 HOH HOH . 
H 6 HOH A 44 546 88 HOH HOH . 
H 6 HOH A 45 547 95 HOH HOH . 
H 6 HOH A 46 548 99 HOH HOH . 
H 6 HOH A 47 549 101 HOH HOH . 
H 6 HOH A 48 550 105 HOH HOH . 
H 6 HOH A 49 551 106 HOH HOH . 
H 6 HOH A 50 552 108 HOH HOH . 
H 6 HOH A 51 553 109 HOH HOH . 
H 6 HOH A 52 554 111 HOH HOH . 
H 6 HOH A 53 555 121 HOH HOH . 
H 6 HOH A 54 556 122 HOH HOH . 
H 6 HOH A 55 557 124 HOH HOH . 
H 6 HOH A 56 558 125 HOH HOH . 
H 6 HOH A 57 559 126 HOH HOH . 
H 6 HOH A 58 560 128 HOH HOH . 
H 6 HOH A 59 561 132 HOH HOH . 
H 6 HOH A 60 562 133 HOH HOH . 
H 6 HOH A 61 563 134 HOH HOH . 
H 6 HOH A 62 564 135 HOH HOH . 
H 6 HOH A 63 565 137 HOH HOH . 
H 6 HOH A 64 566 141 HOH HOH . 
H 6 HOH A 65 567 142 HOH HOH . 
H 6 HOH A 66 568 147 HOH HOH . 
H 6 HOH A 67 569 148 HOH HOH . 
H 6 HOH A 68 570 150 HOH HOH . 
H 6 HOH A 69 571 161 HOH HOH . 
H 6 HOH A 70 572 164 HOH HOH . 
H 6 HOH A 71 573 168 HOH HOH . 
H 6 HOH A 72 574 169 HOH HOH . 
H 6 HOH A 73 575 170 HOH HOH . 
H 6 HOH A 74 576 171 HOH HOH . 
H 6 HOH A 75 577 172 HOH HOH . 
H 6 HOH A 76 578 173 HOH HOH . 
H 6 HOH A 77 579 174 HOH HOH . 
H 6 HOH A 78 580 176 HOH HOH . 
H 6 HOH A 79 581 177 HOH HOH . 
H 6 HOH A 80 582 178 HOH HOH . 
H 6 HOH A 81 583 180 HOH HOH . 
H 6 HOH A 82 584 182 HOH HOH . 
H 6 HOH A 83 585 187 HOH HOH . 
H 6 HOH A 84 586 193 HOH HOH . 
H 6 HOH A 85 587 194 HOH HOH . 
H 6 HOH A 86 588 195 HOH HOH . 
H 6 HOH A 87 589 196 HOH HOH . 
H 6 HOH A 88 590 198 HOH HOH . 
H 6 HOH A 89 591 200 HOH HOH . 
H 6 HOH A 90 592 202 HOH HOH . 
H 6 HOH A 91 593 203 HOH HOH . 
H 6 HOH A 92 594 207 HOH HOH . 
H 6 HOH A 93 595 209 HOH HOH . 
H 6 HOH A 94 596 213 HOH HOH . 
H 6 HOH A 95 597 221 HOH HOH . 
H 6 HOH A 96 598 223 HOH HOH . 
H 6 HOH A 97 599 226 HOH HOH . 
H 6 HOH A 98 600 231 HOH HOH . 
H 6 HOH A 99 601 236 HOH HOH . 
H 6 HOH A 100 602 237 HOH HOH . 
H 6 HOH A 101 603 240 HOH HOH . 
H 6 HOH A 102 604 241 HOH HOH . 
I 6 HOH B 1 331 5 HOH HOH . 
I 6 HOH B 2 332 6 HOH HOH . 
I 6 HOH B 3 333 7 HOH HOH . 
I 6 HOH B 4 334 9 HOH HOH . 
I 6 HOH B 5 335 10 HOH HOH . 
I 6 HOH B 6 336 11 HOH HOH . 
I 6 HOH B 7 337 20 HOH HOH . 
I 6 HOH B 8 338 23 HOH HOH . 
I 6 HOH B 9 339 25 HOH HOH . 
I 6 HOH B 10 340 28 HOH HOH . 
I 6 HOH B 11 341 30 HOH HOH . 
I 6 HOH B 12 342 35 HOH HOH . 
I 6 HOH B 13 343 36 HOH HOH . 
I 6 HOH B 14 344 37 HOH HOH . 
I 6 HOH B 15 345 38 HOH HOH . 
I 6 HOH B 16 346 45 HOH HOH . 
I 6 HOH B 17 347 48 HOH HOH . 
I 6 HOH B 18 348 49 HOH HOH . 
I 6 HOH B 19 349 51 HOH HOH . 
I 6 HOH B 20 350 53 HOH HOH . 
I 6 HOH B 21 351 56 HOH HOH . 
I 6 HOH B 22 352 57 HOH HOH . 
I 6 HOH B 23 353 61 HOH HOH . 
I 6 HOH B 24 354 62 HOH HOH . 
I 6 HOH B 25 355 66 HOH HOH . 
I 6 HOH B 26 356 68 HOH HOH . 
I 6 HOH B 27 357 72 HOH HOH . 
I 6 HOH B 28 358 79 HOH HOH . 
I 6 HOH B 29 359 80 HOH HOH . 
I 6 HOH B 30 360 82 HOH HOH . 
I 6 HOH B 31 361 89 HOH HOH . 
I 6 HOH B 32 362 90 HOH HOH . 
I 6 HOH B 33 363 91 HOH HOH . 
I 6 HOH B 34 364 92 HOH HOH . 
I 6 HOH B 35 365 93 HOH HOH . 
I 6 HOH B 36 366 97 HOH HOH . 
I 6 HOH B 37 367 100 HOH HOH . 
I 6 HOH B 38 368 102 HOH HOH . 
I 6 HOH B 39 369 104 HOH HOH . 
I 6 HOH B 40 370 107 HOH HOH . 
I 6 HOH B 41 371 110 HOH HOH . 
I 6 HOH B 42 372 112 HOH HOH . 
I 6 HOH B 43 373 116 HOH HOH . 
I 6 HOH B 44 374 123 HOH HOH . 
I 6 HOH B 45 375 130 HOH HOH . 
I 6 HOH B 46 376 131 HOH HOH . 
I 6 HOH B 47 377 136 HOH HOH . 
I 6 HOH B 48 378 138 HOH HOH . 
I 6 HOH B 49 379 139 HOH HOH . 
I 6 HOH B 50 380 140 HOH HOH . 
I 6 HOH B 51 381 143 HOH HOH . 
I 6 HOH B 52 382 144 HOH HOH . 
I 6 HOH B 53 383 145 HOH HOH . 
I 6 HOH B 54 384 149 HOH HOH . 
I 6 HOH B 55 385 156 HOH HOH . 
I 6 HOH B 56 386 157 HOH HOH . 
I 6 HOH B 57 387 158 HOH HOH . 
I 6 HOH B 58 388 159 HOH HOH . 
I 6 HOH B 59 389 160 HOH HOH . 
I 6 HOH B 60 390 165 HOH HOH . 
I 6 HOH B 61 391 166 HOH HOH . 
I 6 HOH B 62 392 175 HOH HOH . 
I 6 HOH B 63 393 179 HOH HOH . 
I 6 HOH B 64 394 181 HOH HOH . 
I 6 HOH B 65 395 183 HOH HOH . 
I 6 HOH B 66 396 185 HOH HOH . 
I 6 HOH B 67 397 190 HOH HOH . 
I 6 HOH B 68 398 191 HOH HOH . 
I 6 HOH B 69 399 201 HOH HOH . 
I 6 HOH B 70 400 204 HOH HOH . 
I 6 HOH B 71 401 219 HOH HOH . 
I 6 HOH B 72 402 224 HOH HOH . 
I 6 HOH B 73 403 232 HOH HOH . 
I 6 HOH B 74 404 233 HOH HOH . 
I 6 HOH B 75 405 234 HOH HOH . 
I 6 HOH B 76 406 235 HOH HOH . 
I 6 HOH B 77 407 238 HOH HOH . 
I 6 HOH B 78 408 239 HOH HOH . 
J 6 HOH C 1 87 13 HOH HOH . 
J 6 HOH C 2 88 14 HOH HOH . 
J 6 HOH C 3 89 15 HOH HOH . 
J 6 HOH C 4 90 54 HOH HOH . 
J 6 HOH C 5 96 96 HOH HOH . 
J 6 HOH C 6 98 98 HOH HOH . 
J 6 HOH C 7 103 103 HOH HOH . 
J 6 HOH C 8 129 129 HOH HOH . 
J 6 HOH C 9 153 153 HOH HOH . 
J 6 HOH C 10 186 186 HOH HOH . 
J 6 HOH C 11 205 205 HOH HOH . 
J 6 HOH C 12 230 230 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           FE 
_atom_site.label_atom_id         FE 
_atom_site.label_comp_id         FE 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               71.921 
_atom_site.Cartn_y               -18.288 
_atom_site.Cartn_z               9.365 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        38.43 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          FE 
_atom_site.auth_comp_id          FE 
_atom_site.auth_seq_id           499 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    44 
_model_server_stats.query_time_ms           364 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           1 
#