data_3RNJ # _model_server_result.job_id 1zjDuzKJJD7jbE2XPAW1Kw _model_server_result.datetime_utc '2025-07-27 05:16:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rnj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3RNJ # _exptl.entry_id 3RNJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.243 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '{[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL-AMINO}-ACETIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3RNJ _cell.length_a 29.96 _cell.length_b 36.64 _cell.length_c 58.11 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RNJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N2 O8' _chem_comp.formula_weight 292.243 _chem_comp.id EDT _chem_comp.mon_nstd_flag . _chem_comp.name '{[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL-AMINO}-ACETIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O20 C5 EDT sing 79 n n O20 H20 EDT sing 80 n n C5 O19 EDT doub 81 n n C5 C4 EDT sing 82 n n C4 N3 EDT sing 83 n n C4 H041 EDT sing 84 n n C4 H042 EDT sing 85 n n N3 C2 EDT sing 86 n n N3 C6 EDT sing 87 n n C2 C1 EDT sing 88 n n C2 H021 EDT sing 89 n n C2 H022 EDT sing 90 n n C1 O18 EDT doub 91 n n C1 O17 EDT sing 92 n n O17 H17 EDT sing 93 n n C6 C7 EDT sing 94 n n C6 H061 EDT sing 95 n n C6 H062 EDT sing 96 n n C7 N8 EDT sing 97 n n C7 H071 EDT sing 98 n n C7 H072 EDT sing 99 n n N8 C9 EDT sing 100 n n N8 C11 EDT sing 101 n n C9 C10 EDT sing 102 n n C9 H091 EDT sing 103 n n C9 H092 EDT sing 104 n n C10 O16 EDT sing 105 n n C10 O15 EDT doub 106 n n O16 H16 EDT sing 107 n n C11 C12 EDT sing 108 n n C11 H111 EDT sing 109 n n C11 H112 EDT sing 110 n n C12 O13 EDT doub 111 n n C12 O14 EDT sing 112 n n O14 H14 EDT sing 113 n n # _atom_sites.entry_id 3RNJ _atom_sites.fract_transf_matrix[1][1] 0.033378 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027293 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017209 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDT A 1 1 1 EDT EDT . C 3 EDO A 1 437 1 EDO EDO . D 3 EDO A 1 2 2 EDO EDO . E 3 EDO A 1 3 3 EDO EDO . F 4 IPA A 1 438 1 IPA IPA . G 5 HOH A 1 4 4 HOH HOH . G 5 HOH A 2 5 5 HOH HOH . G 5 HOH A 3 6 6 HOH HOH . G 5 HOH A 4 7 7 HOH HOH . G 5 HOH A 5 8 8 HOH HOH . G 5 HOH A 6 9 9 HOH HOH . G 5 HOH A 7 10 10 HOH HOH . G 5 HOH A 8 11 11 HOH HOH . G 5 HOH A 9 12 12 HOH HOH . G 5 HOH A 10 13 13 HOH HOH . G 5 HOH A 11 14 14 HOH HOH . G 5 HOH A 12 15 15 HOH HOH . G 5 HOH A 13 16 16 HOH HOH . G 5 HOH A 14 17 17 HOH HOH . G 5 HOH A 15 18 18 HOH HOH . G 5 HOH A 16 19 19 HOH HOH . G 5 HOH A 17 20 20 HOH HOH . G 5 HOH A 18 21 21 HOH HOH . G 5 HOH A 19 22 22 HOH HOH . G 5 HOH A 20 23 23 HOH HOH . G 5 HOH A 21 24 24 HOH HOH . G 5 HOH A 22 25 25 HOH HOH . G 5 HOH A 23 26 26 HOH HOH . G 5 HOH A 24 27 27 HOH HOH . G 5 HOH A 25 28 28 HOH HOH . G 5 HOH A 26 29 29 HOH HOH . G 5 HOH A 27 30 30 HOH HOH . G 5 HOH A 28 31 31 HOH HOH . G 5 HOH A 29 32 32 HOH HOH . G 5 HOH A 30 33 33 HOH HOH . G 5 HOH A 31 34 34 HOH HOH . G 5 HOH A 32 35 35 HOH HOH . G 5 HOH A 33 36 36 HOH HOH . G 5 HOH A 34 37 37 HOH HOH . G 5 HOH A 35 38 38 HOH HOH . G 5 HOH A 36 39 39 HOH HOH . G 5 HOH A 37 40 40 HOH HOH . G 5 HOH A 38 41 41 HOH HOH . G 5 HOH A 39 42 42 HOH HOH . G 5 HOH A 40 43 43 HOH HOH . G 5 HOH A 41 44 44 HOH HOH . G 5 HOH A 42 45 45 HOH HOH . G 5 HOH A 43 46 46 HOH HOH . G 5 HOH A 44 47 47 HOH HOH . G 5 HOH A 45 48 48 HOH HOH . G 5 HOH A 46 49 49 HOH HOH . G 5 HOH A 47 50 50 HOH HOH . G 5 HOH A 48 51 51 HOH HOH . G 5 HOH A 49 52 52 HOH HOH . G 5 HOH A 50 53 53 HOH HOH . G 5 HOH A 51 54 54 HOH HOH . G 5 HOH A 52 55 55 HOH HOH . G 5 HOH A 53 56 56 HOH HOH . G 5 HOH A 54 57 57 HOH HOH . G 5 HOH A 55 58 58 HOH HOH . G 5 HOH A 56 59 59 HOH HOH . G 5 HOH A 57 60 60 HOH HOH . G 5 HOH A 58 61 61 HOH HOH . G 5 HOH A 59 62 62 HOH HOH . G 5 HOH A 60 63 63 HOH HOH . G 5 HOH A 61 64 64 HOH HOH . G 5 HOH A 62 65 65 HOH HOH . G 5 HOH A 63 66 66 HOH HOH . G 5 HOH A 64 67 67 HOH HOH . G 5 HOH A 65 68 68 HOH HOH . G 5 HOH A 66 69 69 HOH HOH . G 5 HOH A 67 70 70 HOH HOH . G 5 HOH A 68 71 71 HOH HOH . G 5 HOH A 69 72 72 HOH HOH . G 5 HOH A 70 73 73 HOH HOH . G 5 HOH A 71 74 74 HOH HOH . G 5 HOH A 72 75 75 HOH HOH . G 5 HOH A 73 76 76 HOH HOH . G 5 HOH A 74 77 77 HOH HOH . G 5 HOH A 75 78 78 HOH HOH . G 5 HOH A 76 79 79 HOH HOH . G 5 HOH A 77 80 80 HOH HOH . G 5 HOH A 78 81 81 HOH HOH . G 5 HOH A 79 82 82 HOH HOH . G 5 HOH A 80 83 83 HOH HOH . G 5 HOH A 81 84 84 HOH HOH . G 5 HOH A 82 85 85 HOH HOH . G 5 HOH A 83 86 86 HOH HOH . G 5 HOH A 84 439 1 HOH HOH . G 5 HOH A 85 440 2 HOH HOH . G 5 HOH A 86 441 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O20 EDT . . . B 2 11.103 -18.392 5.101 1 12.35 ? O20 EDT 1 A 1 HETATM 2 C C5 EDT . . . B 2 12.23 -18.716 5.552 1 16.86 ? C5 EDT 1 A 1 HETATM 3 O O19 EDT . . . B 2 12.45 -19.915 5.962 1 14.47 ? O19 EDT 1 A 1 HETATM 4 C C4 EDT . . . B 2 13.315 -17.68 5.602 1 14.74 ? C4 EDT 1 A 1 HETATM 5 N N3 EDT . . . B 2 12.951 -16.355 5.155 1 14.89 ? N3 EDT 1 A 1 HETATM 6 C C2 EDT . . . B 2 12.067 -15.676 6.118 1 13.55 ? C2 EDT 1 A 1 HETATM 7 C C1 EDT . . . B 2 11.072 -14.72 5.544 1 12.24 ? C1 EDT 1 A 1 HETATM 8 O O18 EDT . . . B 2 10.844 -14.758 4.312 1 12.02 ? O18 EDT 1 A 1 HETATM 9 O O17 EDT . . . B 2 10.497 -13.905 6.284 1 16.16 ? O17 EDT 1 A 1 HETATM 10 C C6 EDT . . . B 2 14.075 -15.55 4.804 1 11.27 ? C6 EDT 1 A 1 HETATM 11 C C7 EDT . . . B 2 14.621 -15.797 3.441 1 10.95 ? C7 EDT 1 A 1 HETATM 12 N N8 EDT . . . B 2 13.607 -15.873 2.4 1 10.2 ? N8 EDT 1 A 1 HETATM 13 C C9 EDT . . . B 2 14.054 -16.726 1.328 1 12.93 ? C9 EDT 1 A 1 HETATM 14 C C10 EDT . . . B 2 13.741 -18.195 1.497 1 15.27 ? C10 EDT 1 A 1 HETATM 15 O O16 EDT . . . B 2 13.356 -18.63 2.627 1 16.64 ? O16 EDT 1 A 1 HETATM 16 O O15 EDT . . . B 2 13.887 -18.988 0.527 1 12.18 ? O15 EDT 1 A 1 HETATM 17 C C11 EDT . . . B 2 13.329 -14.553 1.932 1 10.14 ? C11 EDT 1 A 1 HETATM 18 C C12 EDT . . . B 2 12.217 -14.366 0.885 1 14.66 ? C12 EDT 1 A 1 HETATM 19 O O13 EDT . . . B 2 12.379 -13.53 -0.059 1 13.4 ? O13 EDT 1 A 1 HETATM 20 O O14 EDT . . . B 2 11.149 -15.06 0.959 1 16.2 ? O14 EDT 1 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #