data_3RNU
#
_model_server_result.job_id            C8YFQInu2tOwlXAigxaQmQ 
_model_server_result.datetime_utc      '2024-10-13 09:12:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3rnu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":6}' 
#
_entry.id    3RNU 
#
_exptl.entry_id    3RNU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              46.025 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FORMIC ACID' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3RNU 
_cell.length_a            126.841 
_cell.length_b            126.841 
_cell.length_c            163.868 
_cell.Z_PDB               36 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3RNU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 I N N 
? 4 J N N 
? 4 L N N 
? 4 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
hydrog WATSON-CRICK hydrog1 E N1 DG 1 K DG 1 1_555 F N3 DC 15 L DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 E N2 DG 1 K DG 1 1_555 F O2 DC 15 L DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 E O6 DG 1 K DG 1 1_555 F N4 DC 15 L DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'DG-DC PAIR' hydrog4 E N1 DG 1 K DG 1 1_555 F N3 DC 16 L DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 E N3 DC 2 K DC 2 1_555 F N1 DG 14 L DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 E N4 DC 2 K DC 2 1_555 F O6 DG 14 L DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 E O2 DC 2 K DC 2 1_555 F N2 DG 14 L DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 E N3 DC 3 K DC 3 1_555 F N1 DG 13 L DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 E N4 DC 3 K DC 3 1_555 F O6 DG 13 L DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 E O2 DC 3 K DC 3 1_555 F N2 DG 13 L DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'DC-DG PAIR' hydrog11 E O2 DC 3 K DC 3 1_555 F N2 DG 14 L DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 E N1 DA 4 K DA 4 1_555 F N3 DT 12 L DT 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 E N6 DA 4 K DA 4 1_555 F O4 DT 12 L DT 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 E N3 DT 5 K DT 5 1_555 F N1 DA 11 L DA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 E O4 DT 5 K DT 5 1_555 F N6 DA 11 L DA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 E N3 DC 6 K DC 6 1_555 F N1 DG 10 L DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 E N4 DC 6 K DC 6 1_555 F O6 DG 10 L DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog18 E O2 DC 6 K DC 6 1_555 F N2 DG 10 L DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog19 E N1 DA 7 K DA 7 1_555 F N3 DT 9 L DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog20 E N6 DA 7 K DA 7 1_555 F O4 DT 9 L DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog21 E N1 DA 8 K DA 8 1_555 F N3 DT 8 L DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog22 E N6 DA 8 K DA 8 1_555 F O4 DT 8 L DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog23 E N1 DA 9 K DA 9 1_555 F N3 DT 7 L DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog24 E N6 DA 9 K DA 9 1_555 F O4 DT 7 L DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog25 E N1 DG 10 K DG 10 1_555 F N3 DC 6 L DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog26 E N2 DG 10 K DG 10 1_555 F O2 DC 6 L DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog27 E O6 DG 10 K DG 10 1_555 F N4 DC 6 L DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'DG-DT MISPAIR' hydrog28 E N2 DG 10 K DG 10 1_555 F O2 DT 7 L DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog29 E N1 DA 11 K DA 11 1_555 F N3 DT 5 L DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog30 E N6 DA 11 K DA 11 1_555 F O4 DT 5 L DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog31 E N1 DG 12 K DG 12 1_555 F N3 DC 4 L DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog32 E N2 DG 12 K DG 12 1_555 F O2 DC 4 L DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog33 E O6 DG 12 K DG 12 1_555 F N4 DC 4 L DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog34 E N1 DA 13 K DA 13 1_555 F N3 DT 3 L DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog35 E N6 DA 13 K DA 13 1_555 F O4 DT 3 L DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog36 E N1 DG 14 K DG 14 1_555 F N3 DC 2 L DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog37 E N2 DG 14 K DG 14 1_555 F O2 DC 2 L DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog38 E O6 DG 14 K DG 14 1_555 F N4 DC 2 L DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog39 E N1 DA 15 K DA 15 1_555 F N3 DT 1 L DT 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog40 E N6 DA 15 K DA 15 1_555 F O4 DT 1 L DT 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'DG-DT MISPAIR' hydrog41 E N2 DG 16 K DG 16 1_555 F O2 DT 1 L DT 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'C H2 O2' 
_chem_comp.formula_weight    46.025 
_chem_comp.id                FMT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FORMIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O1 FMT doub 241 n n 
C O2 FMT sing 242 n n 
C H FMT sing 243 n n 
O2 HO2 FMT sing 244 n n 
#
_atom_sites.entry_id                     3RNU 
_atom_sites.fract_transf_matrix[1][1]    0.007884 
_atom_sites.fract_transf_matrix[1][2]    0.004552 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009104 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006102 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 FMT A 1 6 6 FMT FMT . 
H 5 EDO B 1 2 2 EDO EDO . 
I 4 FMT B 1 4 4 FMT FMT . 
J 4 FMT C 1 3 3 FMT FMT . 
K 5 EDO D 1 1 1 EDO EDO . 
L 4 FMT D 1 5 5 FMT FMT . 
M 4 FMT D 1 7 7 FMT FMT . 
N 6 HOH A 1 1 1 HOH HOH . 
N 6 HOH A 2 3 3 HOH HOH . 
N 6 HOH A 3 7 7 HOH HOH . 
N 6 HOH A 4 11 11 HOH HOH . 
N 6 HOH A 5 15 15 HOH HOH . 
N 6 HOH A 6 16 16 HOH HOH . 
N 6 HOH A 7 33 33 HOH HOH . 
N 6 HOH A 8 35 35 HOH HOH . 
N 6 HOH A 9 40 40 HOH HOH . 
N 6 HOH A 10 42 42 HOH HOH . 
N 6 HOH A 11 49 49 HOH HOH . 
N 6 HOH A 12 50 50 HOH HOH . 
N 6 HOH A 13 61 61 HOH HOH . 
N 6 HOH A 14 67 67 HOH HOH . 
N 6 HOH A 15 69 69 HOH HOH . 
N 6 HOH A 16 70 70 HOH HOH . 
N 6 HOH A 17 71 71 HOH HOH . 
N 6 HOH A 18 72 72 HOH HOH . 
N 6 HOH A 19 73 73 HOH HOH . 
N 6 HOH A 20 78 78 HOH HOH . 
N 6 HOH A 21 92 92 HOH HOH . 
N 6 HOH A 22 95 95 HOH HOH . 
N 6 HOH A 23 100 100 HOH HOH . 
N 6 HOH A 24 771 6 HOH HOH . 
O 6 HOH B 1 9 9 HOH HOH . 
O 6 HOH B 2 12 12 HOH HOH . 
O 6 HOH B 3 13 13 HOH HOH . 
O 6 HOH B 4 17 17 HOH HOH . 
O 6 HOH B 5 23 23 HOH HOH . 
O 6 HOH B 6 28 28 HOH HOH . 
O 6 HOH B 7 31 31 HOH HOH . 
O 6 HOH B 8 44 44 HOH HOH . 
O 6 HOH B 9 45 45 HOH HOH . 
O 6 HOH B 10 52 52 HOH HOH . 
O 6 HOH B 11 59 59 HOH HOH . 
O 6 HOH B 12 77 77 HOH HOH . 
O 6 HOH B 13 82 82 HOH HOH . 
O 6 HOH B 14 83 83 HOH HOH . 
O 6 HOH B 15 84 84 HOH HOH . 
O 6 HOH B 16 85 85 HOH HOH . 
O 6 HOH B 17 86 86 HOH HOH . 
O 6 HOH B 18 87 87 HOH HOH . 
O 6 HOH B 19 89 89 HOH HOH . 
O 6 HOH B 20 90 90 HOH HOH . 
O 6 HOH B 21 91 91 HOH HOH . 
O 6 HOH B 22 93 93 HOH HOH . 
O 6 HOH B 23 96 96 HOH HOH . 
O 6 HOH B 24 97 97 HOH HOH . 
O 6 HOH B 25 771 2 HOH HOH . 
O 6 HOH B 26 772 4 HOH HOH . 
P 6 HOH C 1 8 8 HOH HOH . 
P 6 HOH C 2 20 20 HOH HOH . 
P 6 HOH C 3 21 21 HOH HOH . 
P 6 HOH C 4 24 24 HOH HOH . 
P 6 HOH C 5 27 27 HOH HOH . 
P 6 HOH C 6 29 29 HOH HOH . 
P 6 HOH C 7 32 32 HOH HOH . 
P 6 HOH C 8 38 38 HOH HOH . 
P 6 HOH C 9 39 39 HOH HOH . 
P 6 HOH C 10 41 41 HOH HOH . 
P 6 HOH C 11 48 48 HOH HOH . 
P 6 HOH C 12 51 51 HOH HOH . 
P 6 HOH C 13 54 54 HOH HOH . 
P 6 HOH C 14 55 55 HOH HOH . 
P 6 HOH C 15 60 60 HOH HOH . 
P 6 HOH C 16 62 62 HOH HOH . 
P 6 HOH C 17 66 66 HOH HOH . 
P 6 HOH C 18 68 68 HOH HOH . 
P 6 HOH C 19 74 74 HOH HOH . 
P 6 HOH C 20 75 75 HOH HOH . 
P 6 HOH C 21 76 76 HOH HOH . 
P 6 HOH C 22 81 81 HOH HOH . 
P 6 HOH C 23 98 98 HOH HOH . 
P 6 HOH C 24 101 101 HOH HOH . 
Q 6 HOH D 1 10 10 HOH HOH . 
Q 6 HOH D 2 14 14 HOH HOH . 
Q 6 HOH D 3 18 18 HOH HOH . 
Q 6 HOH D 4 19 19 HOH HOH . 
Q 6 HOH D 5 22 22 HOH HOH . 
Q 6 HOH D 6 25 25 HOH HOH . 
Q 6 HOH D 7 26 26 HOH HOH . 
Q 6 HOH D 8 30 30 HOH HOH . 
Q 6 HOH D 9 34 34 HOH HOH . 
Q 6 HOH D 10 36 36 HOH HOH . 
Q 6 HOH D 11 37 37 HOH HOH . 
Q 6 HOH D 12 43 43 HOH HOH . 
Q 6 HOH D 13 46 46 HOH HOH . 
Q 6 HOH D 14 47 47 HOH HOH . 
Q 6 HOH D 15 53 53 HOH HOH . 
Q 6 HOH D 16 56 56 HOH HOH . 
Q 6 HOH D 17 57 57 HOH HOH . 
Q 6 HOH D 18 58 58 HOH HOH . 
Q 6 HOH D 19 79 79 HOH HOH . 
Q 6 HOH D 20 80 80 HOH HOH . 
Q 6 HOH D 21 88 88 HOH HOH . 
Q 6 HOH D 22 94 94 HOH HOH . 
Q 6 HOH D 23 99 99 HOH HOH . 
Q 6 HOH D 24 105 105 HOH HOH . 
Q 6 HOH D 25 771 5 HOH HOH . 
R 6 HOH K 1 63 63 HOH HOH . 
R 6 HOH K 2 64 64 HOH HOH . 
R 6 HOH K 3 102 102 HOH HOH . 
R 6 HOH K 4 104 104 HOH HOH . 
S 6 HOH L 1 65 65 HOH HOH . 
S 6 HOH L 2 103 103 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C FMT . . . G 4 2.278 31.347 6.406 1 56.44 ? C FMT 6 A 1 
HETATM 2 O O1 FMT . . . G 4 1.688 31.055 5.366 1 60.15 ? O1 FMT 6 A 1 
HETATM 3 O O2 FMT . . . G 4 1.75 31.333 7.515 1 53.89 ? O2 FMT 6 A 1 
#
_model_server_stats.io_time_ms              114 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           3 
#