data_3RNY
#
_model_server_result.job_id            kbKRGA10XxL9blWwI5KIGQ 
_model_server_result.datetime_utc      '2024-11-29 17:05:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3rny 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1}' 
#
_entry.id    3RNY 
#
_exptl.entry_id    3RNY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.77 
_cell.angle_gamma         90 
_cell.entry_id            3RNY 
_cell.length_a            39.86 
_cell.length_b            143.47 
_cell.length_c            59.92 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3RNY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
A,B,C,D,E,F 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C NA NA . A NA 1 1_555 A O GLY 78 A GLY 467 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? 
metalc ? metalc2 C NA NA . A NA 1 1_555 A O HIS 80 A HIS 469 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? 
metalc ? metalc3 C NA NA . A NA 1 1_555 A O ILE 83 A ILE 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? 
metalc ? metalc4 C NA NA . A NA 1 1_555 A OG1 THR 85 A THR 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? 
metalc ? metalc5 D NA NA . B NA 1 1_555 B O GLY 78 B GLY 467 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.023 ? 
metalc ? metalc6 D NA NA . B NA 1 1_555 B O HIS 80 B HIS 469 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? 
metalc ? metalc7 D NA NA . B NA 1 1_555 B O ILE 83 B ILE 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? 
metalc ? metalc8 D NA NA . B NA 1 1_555 B OG1 THR 85 B THR 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3RNY 
_atom_sites.fract_transf_matrix[1][1]    0.025088 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002535 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00697 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016774 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NA A 1 1 1 NA NA . 
D 2 NA B 1 1 1 NA NA . 
E 3 HOH A 1 2 2 HOH HOH . 
E 3 HOH A 2 4 4 HOH HOH . 
E 3 HOH A 3 6 6 HOH HOH . 
E 3 HOH A 4 8 8 HOH HOH . 
E 3 HOH A 5 9 9 HOH HOH . 
E 3 HOH A 6 10 10 HOH HOH . 
E 3 HOH A 7 11 11 HOH HOH . 
E 3 HOH A 8 12 12 HOH HOH . 
E 3 HOH A 9 13 13 HOH HOH . 
E 3 HOH A 10 14 14 HOH HOH . 
E 3 HOH A 11 15 15 HOH HOH . 
E 3 HOH A 12 16 16 HOH HOH . 
E 3 HOH A 13 18 18 HOH HOH . 
E 3 HOH A 14 23 23 HOH HOH . 
E 3 HOH A 15 24 24 HOH HOH . 
E 3 HOH A 16 25 25 HOH HOH . 
E 3 HOH A 17 29 29 HOH HOH . 
E 3 HOH A 18 34 34 HOH HOH . 
E 3 HOH A 19 35 35 HOH HOH . 
E 3 HOH A 20 42 42 HOH HOH . 
E 3 HOH A 21 43 43 HOH HOH . 
E 3 HOH A 22 736 1 HOH HOH . 
F 3 HOH B 1 3 3 HOH HOH . 
F 3 HOH B 2 5 5 HOH HOH . 
F 3 HOH B 3 7 7 HOH HOH . 
F 3 HOH B 4 17 17 HOH HOH . 
F 3 HOH B 5 19 19 HOH HOH . 
F 3 HOH B 6 20 20 HOH HOH . 
F 3 HOH B 7 21 21 HOH HOH . 
F 3 HOH B 8 22 22 HOH HOH . 
F 3 HOH B 9 26 26 HOH HOH . 
F 3 HOH B 10 27 27 HOH HOH . 
F 3 HOH B 11 28 28 HOH HOH . 
F 3 HOH B 12 30 30 HOH HOH . 
F 3 HOH B 13 31 31 HOH HOH . 
F 3 HOH B 14 32 32 HOH HOH . 
F 3 HOH B 15 33 33 HOH HOH . 
F 3 HOH B 16 36 36 HOH HOH . 
F 3 HOH B 17 37 37 HOH HOH . 
F 3 HOH B 18 38 38 HOH HOH . 
F 3 HOH B 19 39 39 HOH HOH . 
F 3 HOH B 20 40 40 HOH HOH . 
F 3 HOH B 21 41 41 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               1.317 
_atom_site.Cartn_y               -6.018 
_atom_site.Cartn_z               1.387 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        41.89 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           1 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              71 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           263 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#