data_3RO2 # _model_server_result.job_id s7_huK3HxuB3CpsIYs3-RA _model_server_result.datetime_utc '2024-11-27 01:04:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ro2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 3RO2 # _exptl.entry_id 3RO2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3RO2 _cell.length_a 91.305 _cell.length_b 91.305 _cell.length_c 178.376 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RO2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3RO2 _atom_sites.fract_transf_matrix[1][1] 0.010952 _atom_sites.fract_transf_matrix[1][2] 0.006323 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012647 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005606 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 1 1 GOL GOL . D 3 GOL A 1 2 2 GOL GOL . E 3 GOL A 1 3 3 GOL GOL . F 4 HOH A 1 4 4 HOH HOH . F 4 HOH A 2 5 5 HOH HOH . F 4 HOH A 3 6 6 HOH HOH . F 4 HOH A 4 7 7 HOH HOH . F 4 HOH A 5 8 8 HOH HOH . F 4 HOH A 6 9 9 HOH HOH . F 4 HOH A 7 10 10 HOH HOH . F 4 HOH A 8 11 11 HOH HOH . F 4 HOH A 9 351 1 HOH HOH . F 4 HOH A 10 352 2 HOH HOH . F 4 HOH A 11 353 3 HOH HOH . F 4 HOH A 12 354 13 HOH HOH . F 4 HOH A 13 355 14 HOH HOH . F 4 HOH A 14 356 15 HOH HOH . F 4 HOH A 15 357 16 HOH HOH . F 4 HOH A 16 358 17 HOH HOH . F 4 HOH A 17 359 18 HOH HOH . F 4 HOH A 18 360 19 HOH HOH . F 4 HOH A 19 361 20 HOH HOH . F 4 HOH A 20 362 21 HOH HOH . F 4 HOH A 21 363 22 HOH HOH . F 4 HOH A 22 364 23 HOH HOH . F 4 HOH A 23 365 24 HOH HOH . F 4 HOH A 24 366 25 HOH HOH . F 4 HOH A 25 367 26 HOH HOH . F 4 HOH A 26 368 27 HOH HOH . F 4 HOH A 27 369 28 HOH HOH . F 4 HOH A 28 370 29 HOH HOH . F 4 HOH A 29 371 30 HOH HOH . F 4 HOH A 30 372 32 HOH HOH . F 4 HOH A 31 373 33 HOH HOH . F 4 HOH A 32 374 34 HOH HOH . F 4 HOH A 33 375 35 HOH HOH . F 4 HOH A 34 376 36 HOH HOH . F 4 HOH A 35 377 37 HOH HOH . F 4 HOH A 36 378 38 HOH HOH . F 4 HOH A 37 379 39 HOH HOH . F 4 HOH A 38 380 40 HOH HOH . F 4 HOH A 39 381 41 HOH HOH . F 4 HOH A 40 382 42 HOH HOH . F 4 HOH A 41 383 43 HOH HOH . F 4 HOH A 42 384 44 HOH HOH . F 4 HOH A 43 385 45 HOH HOH . F 4 HOH A 44 386 46 HOH HOH . F 4 HOH A 45 387 48 HOH HOH . F 4 HOH A 46 388 49 HOH HOH . F 4 HOH A 47 389 50 HOH HOH . F 4 HOH A 48 390 52 HOH HOH . F 4 HOH A 49 391 53 HOH HOH . F 4 HOH A 50 392 55 HOH HOH . F 4 HOH A 51 393 56 HOH HOH . F 4 HOH A 52 394 57 HOH HOH . F 4 HOH A 53 395 58 HOH HOH . F 4 HOH A 54 396 59 HOH HOH . F 4 HOH A 55 397 60 HOH HOH . F 4 HOH A 56 398 61 HOH HOH . F 4 HOH A 57 399 62 HOH HOH . F 4 HOH A 58 400 64 HOH HOH . F 4 HOH A 59 401 66 HOH HOH . F 4 HOH A 60 402 67 HOH HOH . F 4 HOH A 61 403 68 HOH HOH . F 4 HOH A 62 404 69 HOH HOH . F 4 HOH A 63 405 70 HOH HOH . F 4 HOH A 64 406 71 HOH HOH . F 4 HOH A 65 407 72 HOH HOH . F 4 HOH A 66 408 73 HOH HOH . F 4 HOH A 67 409 74 HOH HOH . F 4 HOH A 68 410 75 HOH HOH . F 4 HOH A 69 411 76 HOH HOH . F 4 HOH A 70 412 77 HOH HOH . F 4 HOH A 71 413 78 HOH HOH . F 4 HOH A 72 414 79 HOH HOH . F 4 HOH A 73 415 80 HOH HOH . F 4 HOH A 74 416 81 HOH HOH . F 4 HOH A 75 417 82 HOH HOH . F 4 HOH A 76 418 83 HOH HOH . F 4 HOH A 77 419 84 HOH HOH . F 4 HOH A 78 420 85 HOH HOH . F 4 HOH A 79 421 86 HOH HOH . F 4 HOH A 80 422 87 HOH HOH . F 4 HOH A 81 423 88 HOH HOH . F 4 HOH A 82 424 89 HOH HOH . F 4 HOH A 83 425 90 HOH HOH . F 4 HOH A 84 426 91 HOH HOH . F 4 HOH A 85 427 92 HOH HOH . F 4 HOH A 86 428 93 HOH HOH . F 4 HOH A 87 429 94 HOH HOH . F 4 HOH A 88 430 95 HOH HOH . F 4 HOH A 89 431 96 HOH HOH . F 4 HOH A 90 432 97 HOH HOH . F 4 HOH A 91 433 98 HOH HOH . F 4 HOH A 92 434 99 HOH HOH . F 4 HOH A 93 435 100 HOH HOH . F 4 HOH A 94 436 101 HOH HOH . F 4 HOH A 95 437 102 HOH HOH . F 4 HOH A 96 438 103 HOH HOH . G 4 HOH B 1 12 12 HOH HOH . G 4 HOH B 2 31 31 HOH HOH . G 4 HOH B 3 47 47 HOH HOH . G 4 HOH B 4 51 51 HOH HOH . G 4 HOH B 5 54 54 HOH HOH . G 4 HOH B 6 63 63 HOH HOH . G 4 HOH B 7 65 65 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 -9.476 12.101 -14.305 1 41.16 ? C1 GOL 1 A 1 HETATM 2 O O1 GOL . . . C 3 -8.773 11.579 -13.194 1 41.13 ? O1 GOL 1 A 1 HETATM 3 C C2 GOL . . . C 3 -8.852 11.722 -15.652 1 44.15 ? C2 GOL 1 A 1 HETATM 4 O O2 GOL . . . C 3 -7.67 10.964 -15.493 1 46.32 ? O2 GOL 1 A 1 HETATM 5 C C3 GOL . . . C 3 -8.502 13.003 -16.399 1 48.35 ? C3 GOL 1 A 1 HETATM 6 O O3 GOL . . . C 3 -8.806 12.889 -17.771 1 53.4 ? O3 GOL 1 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #