data_3RO9
#
_model_server_result.job_id            3DsKWggnCpv5FcVAt7EpfA 
_model_server_result.datetime_utc      '2024-11-22 04:52:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ro9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1}' 
#
_entry.id    3RO9 
#
_exptl.entry_id    3RO9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              373.451 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            6-ethyl-5-{(3R)-3-[3-methoxy-5-(pyridin-4-yl)phenyl]but-1-yn-1-yl}pyrimidine-2,4-diamine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3RO9 
_cell.length_a            42.26 
_cell.length_b            42.26 
_cell.length_c            238.69 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3RO9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        76 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
_chem_comp.formula           'C22 H23 N5 O' 
_chem_comp.formula_weight    373.451 
_chem_comp.id                06U 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              6-ethyl-5-{(3R)-3-[3-methoxy-5-(pyridin-4-yl)phenyl]but-1-yn-1-yl}pyrimidine-2,4-diamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 N1 06U doub 1 n y 
N1 C6 06U sing 2 n y 
N3 C2 06U sing 3 n y 
NAH C2 06U sing 4 n n 
N3 C4 06U doub 5 n y 
CAI C4 06U sing 6 n n 
C4 C5 06U sing 7 n y 
C5 CAK 06U sing 8 n n 
C5 C6 06U doub 9 n y 
C6 NAJ 06U sing 10 n n 
CAY CAA 06U doub 11 n y 
CAA CAU 06U sing 12 n y 
CAA HAA 06U sing 13 n n 
NAH HNAH 06U sing 14 n n 
NAH HNAA 06U sing 15 n n 
CAZ CAI 06U sing 16 n n 
CAI HAI 06U sing 17 n n 
CAI HAIA 06U sing 18 n n 
NAJ HNAJ 06U sing 19 n n 
NAJ HNAB 06U sing 20 n n 
CAK CAL 06U trip 21 n n 
CAL CAM 06U sing 22 n n 
CAO CAM 06U sing 23 n n 
CAM CAN 06U sing 24 n n 
CAM HAM 06U sing 25 n n 
CAN HAN 06U sing 26 n n 
CAN HANA 06U sing 27 n n 
CAN HANB 06U sing 28 n n 
CAP CAO 06U doub 29 n y 
CAT CAO 06U sing 30 n y 
CAQ CAP 06U sing 31 n y 
CAP HAP 06U sing 32 n n 
OBA CAQ 06U sing 33 n n 
CAR CAQ 06U doub 34 n y 
CAR CAS 06U sing 35 n y 
CAR HAR 06U sing 36 n n 
CAU CAS 06U sing 37 n y 
CAS CAT 06U doub 38 n y 
CAT HAT 06U sing 39 n n 
CAU CAV 06U doub 40 n y 
CAW CAV 06U sing 41 n y 
CAV HAV 06U sing 42 n n 
NAX CAW 06U doub 43 n y 
CAW HAW 06U sing 44 n n 
CAY NAX 06U sing 45 n y 
CAY HAY 06U sing 46 n n 
CAZ HAZ 06U sing 47 n n 
CAZ HAZA 06U sing 48 n n 
CAZ HAZB 06U sing 49 n n 
OBA CBB 06U sing 50 n n 
CBB HBB 06U sing 51 n n 
CBB HBBA 06U sing 52 n n 
CBB HBBB 06U sing 53 n n 
#
_atom_sites.entry_id                     3RO9 
_atom_sites.fract_transf_matrix[1][1]    0.023663 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023663 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00419 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NDP A 1 228 228 NDP NDP . 
D 3 06U A 1 1 1 06U 06U . 
E 2 NDP B 1 228 228 NDP NDP . 
F 3 06U B 1 1 1 06U 06U . 
G 4 HOH A 1 229 4 HOH HOH . 
G 4 HOH A 2 230 3 HOH HOH . 
G 4 HOH A 3 231 7 HOH HOH . 
G 4 HOH A 4 232 8 HOH HOH . 
G 4 HOH A 5 233 13 HOH HOH . 
G 4 HOH A 6 234 17 HOH HOH . 
G 4 HOH A 7 235 24 HOH HOH . 
G 4 HOH A 8 236 25 HOH HOH . 
G 4 HOH A 9 237 27 HOH HOH . 
G 4 HOH A 10 238 36 HOH HOH . 
G 4 HOH A 11 239 44 HOH HOH . 
G 4 HOH A 12 240 52 HOH HOH . 
G 4 HOH A 13 241 61 HOH HOH . 
G 4 HOH A 14 242 63 HOH HOH . 
G 4 HOH A 15 243 77 HOH HOH . 
G 4 HOH A 16 244 80 HOH HOH . 
G 4 HOH A 17 245 86 HOH HOH . 
G 4 HOH A 18 246 1 HOH HOH . 
H 4 HOH B 1 2 2 HOH HOH . 
H 4 HOH B 2 229 5 HOH HOH . 
H 4 HOH B 3 230 6 HOH HOH . 
H 4 HOH B 4 231 9 HOH HOH . 
H 4 HOH B 5 232 10 HOH HOH . 
H 4 HOH B 6 233 12 HOH HOH . 
H 4 HOH B 7 234 14 HOH HOH . 
H 4 HOH B 8 235 15 HOH HOH . 
H 4 HOH B 9 236 16 HOH HOH . 
H 4 HOH B 10 237 21 HOH HOH . 
H 4 HOH B 11 238 22 HOH HOH . 
H 4 HOH B 12 239 33 HOH HOH . 
H 4 HOH B 13 240 50 HOH HOH . 
H 4 HOH B 14 241 51 HOH HOH . 
H 4 HOH B 15 242 54 HOH HOH . 
H 4 HOH B 16 243 55 HOH HOH . 
H 4 HOH B 17 244 58 HOH HOH . 
H 4 HOH B 18 245 66 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 06U . . . D 3 16.213 -10.159 -2.307 1 34.77 ? N1 06U 1 A 1 
HETATM 2 C C2 06U . . . D 3 16.375 -10.761 -3.555 1 34.73 ? C2 06U 1 A 1 
HETATM 3 N N3 06U . . . D 3 15.828 -10.159 -4.694 1 34.95 ? N3 06U 1 A 1 
HETATM 4 C C4 06U . . . D 3 15.115 -8.949 -4.596 1 34.86 ? C4 06U 1 A 1 
HETATM 5 C C5 06U . . . D 3 14.964 -8.362 -3.34 1 34.8 ? C5 06U 1 A 1 
HETATM 6 C C6 06U . . . D 3 15.507 -8.954 -2.202 1 34.42 ? C6 06U 1 A 1 
HETATM 7 C CAA 06U . . . D 3 9.003 -5.51 -7.805 1 39.88 ? CAA 06U 1 A 1 
HETATM 8 N NAH 06U . . . D 3 17.039 -11.904 -3.66 1 35.01 ? NAH 06U 1 A 1 
HETATM 9 C CAI 06U . . . D 3 14.557 -8.335 -5.888 1 34.06 ? CAI 06U 1 A 1 
HETATM 10 N NAJ 06U . . . D 3 15.355 -8.38 -1.01 1 34.31 ? NAJ 06U 1 A 1 
HETATM 11 C CAK 06U . . . D 3 14.241 -7.133 -3.229 1 35.34 ? CAK 06U 1 A 1 
HETATM 12 C CAL 06U . . . D 3 13.62 -6.084 -3.136 1 35.25 ? CAL 06U 1 A 1 
HETATM 13 C CAM 06U . . . D 3 12.894 -4.816 -3.016 1 36.03 ? CAM 06U 1 A 1 
HETATM 14 C CAN 06U . . . D 3 11.872 -4.906 -1.883 1 34.67 ? CAN 06U 1 A 1 
HETATM 15 C CAO 06U . . . D 3 12.213 -4.472 -4.347 1 38.34 ? CAO 06U 1 A 1 
HETATM 16 C CAP 06U . . . D 3 12.721 -3.425 -5.114 1 40.06 ? CAP 06U 1 A 1 
HETATM 17 C CAQ 06U . . . D 3 12.132 -3.088 -6.336 1 41.2 ? CAQ 06U 1 A 1 
HETATM 18 C CAR 06U . . . D 3 11.021 -3.806 -6.782 1 39.8 ? CAR 06U 1 A 1 
HETATM 19 C CAS 06U . . . D 3 10.507 -4.857 -6.019 1 40.35 ? CAS 06U 1 A 1 
HETATM 20 C CAT 06U . . . D 3 11.112 -5.197 -4.806 1 39.4 ? CAT 06U 1 A 1 
HETATM 21 C CAU 06U . . . D 3 9.393 -5.568 -6.468 1 39.78 ? CAU 06U 1 A 1 
HETATM 22 C CAV 06U . . . D 3 8.647 -6.346 -5.585 1 40.05 ? CAV 06U 1 A 1 
HETATM 23 C CAW 06U . . . D 3 7.545 -7.048 -6.069 1 41.54 ? CAW 06U 1 A 1 
HETATM 24 N NAX 06U . . . D 3 7.202 -6.977 -7.353 1 41.51 ? NAX 06U 1 A 1 
HETATM 25 C CAY 06U . . . D 3 7.891 -6.24 -8.22 1 41.31 ? CAY 06U 1 A 1 
HETATM 26 C CAZ 06U . . . D 3 13.653 -9.311 -6.631 1 33.95 ? CAZ 06U 1 A 1 
HETATM 27 O OBA 06U . . . D 3 12.625 -2.054 -7.092 1 40.34 ? OBA 06U 1 A 1 
HETATM 28 C CBB 06U . . . D 3 13.784 -1.433 -6.488 1 40.96 ? CBB 06U 1 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           28 
#