data_3RO9 # _model_server_result.job_id T0GIJkXdIR4rchiDJSfbfA _model_server_result.datetime_utc '2024-11-06 02:56:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ro9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1}' # _entry.id 3RO9 # _exptl.entry_id 3RO9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 373.451 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-ethyl-5-{(3R)-3-[3-methoxy-5-(pyridin-4-yl)phenyl]but-1-yn-1-yl}pyrimidine-2,4-diamine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3RO9 _cell.length_a 42.26 _cell.length_b 42.26 _cell.length_c 238.69 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RO9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C22 H23 N5 O' _chem_comp.formula_weight 373.451 _chem_comp.id 06U _chem_comp.mon_nstd_flag . _chem_comp.name 6-ethyl-5-{(3R)-3-[3-methoxy-5-(pyridin-4-yl)phenyl]but-1-yn-1-yl}pyrimidine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 N1 06U doub 1 n y N1 C6 06U sing 2 n y N3 C2 06U sing 3 n y NAH C2 06U sing 4 n n N3 C4 06U doub 5 n y CAI C4 06U sing 6 n n C4 C5 06U sing 7 n y C5 CAK 06U sing 8 n n C5 C6 06U doub 9 n y C6 NAJ 06U sing 10 n n CAY CAA 06U doub 11 n y CAA CAU 06U sing 12 n y CAA HAA 06U sing 13 n n NAH HNAH 06U sing 14 n n NAH HNAA 06U sing 15 n n CAZ CAI 06U sing 16 n n CAI HAI 06U sing 17 n n CAI HAIA 06U sing 18 n n NAJ HNAJ 06U sing 19 n n NAJ HNAB 06U sing 20 n n CAK CAL 06U trip 21 n n CAL CAM 06U sing 22 n n CAO CAM 06U sing 23 n n CAM CAN 06U sing 24 n n CAM HAM 06U sing 25 n n CAN HAN 06U sing 26 n n CAN HANA 06U sing 27 n n CAN HANB 06U sing 28 n n CAP CAO 06U doub 29 n y CAT CAO 06U sing 30 n y CAQ CAP 06U sing 31 n y CAP HAP 06U sing 32 n n OBA CAQ 06U sing 33 n n CAR CAQ 06U doub 34 n y CAR CAS 06U sing 35 n y CAR HAR 06U sing 36 n n CAU CAS 06U sing 37 n y CAS CAT 06U doub 38 n y CAT HAT 06U sing 39 n n CAU CAV 06U doub 40 n y CAW CAV 06U sing 41 n y CAV HAV 06U sing 42 n n NAX CAW 06U doub 43 n y CAW HAW 06U sing 44 n n CAY NAX 06U sing 45 n y CAY HAY 06U sing 46 n n CAZ HAZ 06U sing 47 n n CAZ HAZA 06U sing 48 n n CAZ HAZB 06U sing 49 n n OBA CBB 06U sing 50 n n CBB HBB 06U sing 51 n n CBB HBBA 06U sing 52 n n CBB HBBB 06U sing 53 n n # _atom_sites.entry_id 3RO9 _atom_sites.fract_transf_matrix[1][1] 0.023663 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023663 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00419 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 228 228 NDP NDP . D 3 06U A 1 1 1 06U 06U . E 2 NDP B 1 228 228 NDP NDP . F 3 06U B 1 1 1 06U 06U . G 4 HOH A 1 229 4 HOH HOH . G 4 HOH A 2 230 3 HOH HOH . G 4 HOH A 3 231 7 HOH HOH . G 4 HOH A 4 232 8 HOH HOH . G 4 HOH A 5 233 13 HOH HOH . G 4 HOH A 6 234 17 HOH HOH . G 4 HOH A 7 235 24 HOH HOH . G 4 HOH A 8 236 25 HOH HOH . G 4 HOH A 9 237 27 HOH HOH . G 4 HOH A 10 238 36 HOH HOH . G 4 HOH A 11 239 44 HOH HOH . G 4 HOH A 12 240 52 HOH HOH . G 4 HOH A 13 241 61 HOH HOH . G 4 HOH A 14 242 63 HOH HOH . G 4 HOH A 15 243 77 HOH HOH . G 4 HOH A 16 244 80 HOH HOH . G 4 HOH A 17 245 86 HOH HOH . G 4 HOH A 18 246 1 HOH HOH . H 4 HOH B 1 2 2 HOH HOH . H 4 HOH B 2 229 5 HOH HOH . H 4 HOH B 3 230 6 HOH HOH . H 4 HOH B 4 231 9 HOH HOH . H 4 HOH B 5 232 10 HOH HOH . H 4 HOH B 6 233 12 HOH HOH . H 4 HOH B 7 234 14 HOH HOH . H 4 HOH B 8 235 15 HOH HOH . H 4 HOH B 9 236 16 HOH HOH . H 4 HOH B 10 237 21 HOH HOH . H 4 HOH B 11 238 22 HOH HOH . H 4 HOH B 12 239 33 HOH HOH . H 4 HOH B 13 240 50 HOH HOH . H 4 HOH B 14 241 51 HOH HOH . H 4 HOH B 15 242 54 HOH HOH . H 4 HOH B 16 243 55 HOH HOH . H 4 HOH B 17 244 58 HOH HOH . H 4 HOH B 18 245 66 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 06U . . . F 3 31.258 4.933 34.532 1 37.92 ? N1 06U 1 B 1 HETATM 2 C C2 06U . . . F 3 31.878 4.767 35.771 1 38.11 ? C2 06U 1 B 1 HETATM 3 N N3 06U . . . F 3 31.282 5.296 36.924 1 38.24 ? N3 06U 1 B 1 HETATM 4 C C4 06U . . . F 3 30.064 5.998 36.846 1 38.38 ? C4 06U 1 B 1 HETATM 5 C C5 06U . . . F 3 29.457 6.155 35.597 1 38.33 ? C5 06U 1 B 1 HETATM 6 C C6 06U . . . F 3 30.047 5.625 34.447 1 38.12 ? C6 06U 1 B 1 HETATM 7 C CAA 06U . . . F 3 26.603 12.328 39.946 1 44.26 ? CAA 06U 1 B 1 HETATM 8 N NAH 06U . . . F 3 33.031 4.111 35.856 1 38.18 ? NAH 06U 1 B 1 HETATM 9 C CAI 06U . . . F 3 29.461 6.532 38.156 1 37.83 ? CAI 06U 1 B 1 HETATM 10 N NAJ 06U . . . F 3 29.47 5.779 33.257 1 38.27 ? NAJ 06U 1 B 1 HETATM 11 C CAK 06U . . . F 3 28.213 6.867 35.508 1 38.36 ? CAK 06U 1 B 1 HETATM 12 C CAL 06U . . . F 3 27.149 7.492 35.451 1 38.73 ? CAL 06U 1 B 1 HETATM 13 C CAM 06U . . . F 3 25.865 8.209 35.348 1 39.35 ? CAM 06U 1 B 1 HETATM 14 C CAN 06U . . . F 3 25.924 9.182 34.169 1 39.1 ? CAN 06U 1 B 1 HETATM 15 C CAO 06U . . . F 3 25.532 8.959 36.653 1 40.94 ? CAO 06U 1 B 1 HETATM 16 C CAP 06U . . . F 3 24.461 8.527 37.441 1 42.31 ? CAP 06U 1 B 1 HETATM 17 C CAQ 06U . . . F 3 24.136 9.192 38.63 1 42.98 ? CAQ 06U 1 B 1 HETATM 18 C CAR 06U . . . F 3 24.885 10.3 39.021 1 41.96 ? CAR 06U 1 B 1 HETATM 19 C CAS 06U . . . F 3 25.949 10.745 38.235 1 43.26 ? CAS 06U 1 B 1 HETATM 20 C CAT 06U . . . F 3 26.275 10.07 37.053 1 42 ? CAT 06U 1 B 1 HETATM 21 C CAU 06U . . . F 3 26.687 11.857 38.637 1 42.82 ? CAU 06U 1 B 1 HETATM 22 C CAV 06U . . . F 3 27.519 12.52 37.739 1 43.38 ? CAV 06U 1 B 1 HETATM 23 C CAW 06U . . . F 3 28.245 13.624 38.181 1 44.85 ? CAW 06U 1 B 1 HETATM 24 N NAX 06U . . . F 3 28.15 14.049 39.437 1 45.17 ? NAX 06U 1 B 1 HETATM 25 C CAY 06U . . . F 3 27.361 13.439 40.319 1 45.96 ? CAY 06U 1 B 1 HETATM 26 C CAZ 06U . . . F 3 30.43 7.448 38.897 1 37.91 ? CAZ 06U 1 B 1 HETATM 27 O OBA 06U . . . F 3 23.092 8.778 39.42 1 42.71 ? OBA 06U 1 B 1 HETATM 28 C CBB 06U . . . F 3 22.476 7.566 38.941 1 43.24 ? CBB 06U 1 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #