data_3RO9
#
_model_server_result.job_id            bj-smvm5-Rls41YFus6ptw 
_model_server_result.datetime_utc      '2024-11-06 03:02:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ro9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":228}' 
#
_entry.id    3RO9 
#
_exptl.entry_id    3RO9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3RO9 
_cell.length_a            42.26 
_cell.length_b            42.26 
_cell.length_c            238.69 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3RO9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        76 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 290 n n 
PA O2A NDP sing 291 n n 
PA O5B NDP sing 292 n n 
PA O3 NDP sing 293 n n 
O2A HOA2 NDP sing 294 n n 
O5B C5B NDP sing 295 n n 
C5B C4B NDP sing 296 n n 
C5B H51A NDP sing 297 n n 
C5B H52A NDP sing 298 n n 
C4B O4B NDP sing 299 n n 
C4B C3B NDP sing 300 n n 
C4B H4B NDP sing 301 n n 
O4B C1B NDP sing 302 n n 
C3B O3B NDP sing 303 n n 
C3B C2B NDP sing 304 n n 
C3B H3B NDP sing 305 n n 
O3B HO3A NDP sing 306 n n 
C2B O2B NDP sing 307 n n 
C2B C1B NDP sing 308 n n 
C2B H2B NDP sing 309 n n 
O2B P2B NDP sing 310 n n 
C1B N9A NDP sing 311 n n 
C1B H1B NDP sing 312 n n 
N9A C8A NDP sing 313 n y 
N9A C4A NDP sing 314 n y 
C8A N7A NDP doub 315 n y 
C8A H8A NDP sing 316 n n 
N7A C5A NDP sing 317 n y 
C5A C6A NDP sing 318 n y 
C5A C4A NDP doub 319 n y 
C6A N6A NDP sing 320 n n 
C6A N1A NDP doub 321 n y 
N6A H61A NDP sing 322 n n 
N6A H62A NDP sing 323 n n 
N1A C2A NDP sing 324 n y 
C2A N3A NDP doub 325 n y 
C2A H2A NDP sing 326 n n 
N3A C4A NDP sing 327 n y 
O3 PN NDP sing 328 n n 
PN O1N NDP doub 329 n n 
PN O2N NDP sing 330 n n 
PN O5D NDP sing 331 n n 
O2N H21N NDP sing 332 n n 
O5D C5D NDP sing 333 n n 
C5D C4D NDP sing 334 n n 
C5D H51N NDP sing 335 n n 
C5D H52N NDP sing 336 n n 
C4D O4D NDP sing 337 n n 
C4D C3D NDP sing 338 n n 
C4D H4D NDP sing 339 n n 
O4D C1D NDP sing 340 n n 
C3D O3D NDP sing 341 n n 
C3D C2D NDP sing 342 n n 
C3D H3D NDP sing 343 n n 
O3D HO3N NDP sing 344 n n 
C2D O2D NDP sing 345 n n 
C2D C1D NDP sing 346 n n 
C2D H2D NDP sing 347 n n 
O2D HO2N NDP sing 348 n n 
C1D N1N NDP sing 349 n n 
C1D H1D NDP sing 350 n n 
N1N C2N NDP sing 351 n n 
N1N C6N NDP sing 352 n n 
C2N C3N NDP doub 353 n n 
C2N H2N NDP sing 354 n n 
C3N C7N NDP sing 355 n n 
C3N C4N NDP sing 356 n n 
C7N O7N NDP doub 357 n n 
C7N N7N NDP sing 358 n n 
N7N H71N NDP sing 359 n n 
N7N H72N NDP sing 360 n n 
C4N C5N NDP sing 361 n n 
C4N H41N NDP sing 362 n n 
C4N H42N NDP sing 363 n n 
C5N C6N NDP doub 364 n n 
C5N H5N NDP sing 365 n n 
C6N H6N NDP sing 366 n n 
P2B O1X NDP doub 367 n n 
P2B O2X NDP sing 368 n n 
P2B O3X NDP sing 369 n n 
O2X HOP2 NDP sing 370 n n 
O3X HOP3 NDP sing 371 n n 
#
_atom_sites.entry_id                     3RO9 
_atom_sites.fract_transf_matrix[1][1]    0.023663 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023663 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00419 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NDP A 1 228 228 NDP NDP . 
D 3 06U A 1 1 1 06U 06U . 
E 2 NDP B 1 228 228 NDP NDP . 
F 3 06U B 1 1 1 06U 06U . 
G 4 HOH A 1 229 4 HOH HOH . 
G 4 HOH A 2 230 3 HOH HOH . 
G 4 HOH A 3 231 7 HOH HOH . 
G 4 HOH A 4 232 8 HOH HOH . 
G 4 HOH A 5 233 13 HOH HOH . 
G 4 HOH A 6 234 17 HOH HOH . 
G 4 HOH A 7 235 24 HOH HOH . 
G 4 HOH A 8 236 25 HOH HOH . 
G 4 HOH A 9 237 27 HOH HOH . 
G 4 HOH A 10 238 36 HOH HOH . 
G 4 HOH A 11 239 44 HOH HOH . 
G 4 HOH A 12 240 52 HOH HOH . 
G 4 HOH A 13 241 61 HOH HOH . 
G 4 HOH A 14 242 63 HOH HOH . 
G 4 HOH A 15 243 77 HOH HOH . 
G 4 HOH A 16 244 80 HOH HOH . 
G 4 HOH A 17 245 86 HOH HOH . 
G 4 HOH A 18 246 1 HOH HOH . 
H 4 HOH B 1 2 2 HOH HOH . 
H 4 HOH B 2 229 5 HOH HOH . 
H 4 HOH B 3 230 6 HOH HOH . 
H 4 HOH B 4 231 9 HOH HOH . 
H 4 HOH B 5 232 10 HOH HOH . 
H 4 HOH B 6 233 12 HOH HOH . 
H 4 HOH B 7 234 14 HOH HOH . 
H 4 HOH B 8 235 15 HOH HOH . 
H 4 HOH B 9 236 16 HOH HOH . 
H 4 HOH B 10 237 21 HOH HOH . 
H 4 HOH B 11 238 22 HOH HOH . 
H 4 HOH B 12 239 33 HOH HOH . 
H 4 HOH B 13 240 50 HOH HOH . 
H 4 HOH B 14 241 51 HOH HOH . 
H 4 HOH B 15 242 54 HOH HOH . 
H 4 HOH B 16 243 55 HOH HOH . 
H 4 HOH B 17 244 58 HOH HOH . 
H 4 HOH B 18 245 66 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . C 2 16.946 1.951 2.981 1 22.75 ? PA NDP 228 A 1 
HETATM 2 O O1A NDP . . . C 2 17.884 1.166 3.816 1 21.56 ? O1A NDP 228 A 1 
HETATM 3 O O2A NDP . . . C 2 15.947 1.095 2.306 1 21.38 ? O2A NDP 228 A 1 
HETATM 4 O O5B NDP . . . C 2 16.222 3.044 3.902 1 22.68 ? O5B NDP 228 A 1 
HETATM 5 C C5B NDP . . . C 2 16.958 3.758 4.864 1 25.53 ? C5B NDP 228 A 1 
HETATM 6 C C4B NDP . . . C 2 15.95 4.479 5.74 1 26.84 ? C4B NDP 228 A 1 
HETATM 7 O O4B NDP . . . C 2 15.374 3.582 6.673 1 26.91 ? O4B NDP 228 A 1 
HETATM 8 C C3B NDP . . . C 2 16.543 5.601 6.572 1 26.71 ? C3B NDP 228 A 1 
HETATM 9 O O3B NDP . . . C 2 16.602 6.801 5.839 1 29.63 ? O3B NDP 228 A 1 
HETATM 10 C C2B NDP . . . C 2 15.53 5.69 7.689 1 26.04 ? C2B NDP 228 A 1 
HETATM 11 O O2B NDP . . . C 2 14.357 6.259 7.162 1 25.85 ? O2B NDP 228 A 1 
HETATM 12 C C1B NDP . . . C 2 15.162 4.237 7.914 1 25.69 ? C1B NDP 228 A 1 
HETATM 13 N N9A NDP . . . C 2 15.973 3.605 8.975 1 25.38 ? N9A NDP 228 A 1 
HETATM 14 C C8A NDP . . . C 2 17.261 3.149 8.864 1 25.74 ? C8A NDP 228 A 1 
HETATM 15 N N7A NDP . . . C 2 17.632 2.607 10.05 1 26.19 ? N7A NDP 228 A 1 
HETATM 16 C C5A NDP . . . C 2 16.593 2.691 10.914 1 25.9 ? C5A NDP 228 A 1 
HETATM 17 C C6A NDP . . . C 2 16.421 2.292 12.243 1 25.71 ? C6A NDP 228 A 1 
HETATM 18 N N6A NDP . . . C 2 17.398 1.693 12.913 1 24.83 ? N6A NDP 228 A 1 
HETATM 19 N N1A NDP . . . C 2 15.214 2.518 12.873 1 26.06 ? N1A NDP 228 A 1 
HETATM 20 C C2A NDP . . . C 2 14.186 3.133 12.192 1 25.76 ? C2A NDP 228 A 1 
HETATM 21 N N3A NDP . . . C 2 14.365 3.519 10.876 1 26.38 ? N3A NDP 228 A 1 
HETATM 22 C C4A NDP . . . C 2 15.544 3.309 10.244 1 25.45 ? C4A NDP 228 A 1 
HETATM 23 O O3 NDP . . . C 2 17.75 2.83 1.896 1 24.04 ? O3 NDP 228 A 1 
HETATM 24 P PN NDP . . . C 2 19.072 2.521 1.026 1 25.14 ? PN NDP 228 A 1 
HETATM 25 O O1N NDP . . . C 2 19.288 3.669 0.12 1 23.87 ? O1N NDP 228 A 1 
HETATM 26 O O2N NDP . . . C 2 20.136 2.105 1.968 1 24.7 ? O2N NDP 228 A 1 
HETATM 27 O O5D NDP . . . C 2 18.651 1.283 0.082 1 25.17 ? O5D NDP 228 A 1 
HETATM 28 C C5D NDP . . . C 2 17.956 1.564 -1.125 1 25.43 ? C5D NDP 228 A 1 
HETATM 29 C C4D NDP . . . C 2 18.653 0.934 -2.326 1 24.19 ? C4D NDP 228 A 1 
HETATM 30 O O4D NDP . . . C 2 18.841 -0.447 -2.075 1 24.16 ? O4D NDP 228 A 1 
HETATM 31 C C3D NDP . . . C 2 17.813 1.035 -3.597 1 24.83 ? C3D NDP 228 A 1 
HETATM 32 O O3D NDP . . . C 2 18.674 1.287 -4.688 1 23.91 ? O3D NDP 228 A 1 
HETATM 33 C C2D NDP . . . C 2 17.231 -0.357 -3.763 1 25.5 ? C2D NDP 228 A 1 
HETATM 34 O O2D NDP . . . C 2 17.01 -0.703 -5.117 1 25.09 ? O2D NDP 228 A 1 
HETATM 35 C C1D NDP . . . C 2 18.316 -1.215 -3.142 1 25.33 ? C1D NDP 228 A 1 
HETATM 36 N N1N NDP . . . C 2 17.8 -2.519 -2.698 1 25.36 ? N1N NDP 228 A 1 
HETATM 37 C C2N NDP . . . C 2 18.346 -3.649 -3.241 1 26.12 ? C2N NDP 228 A 1 
HETATM 38 C C3N NDP . . . C 2 17.892 -4.905 -2.862 1 26.66 ? C3N NDP 228 A 1 
HETATM 39 C C7N NDP . . . C 2 18.462 -6.135 -3.502 1 27.7 ? C7N NDP 228 A 1 
HETATM 40 O O7N NDP . . . C 2 18.385 -7.363 -2.816 1 27.49 ? O7N NDP 228 A 1 
HETATM 41 N N7N NDP . . . C 2 19.029 -6.037 -4.707 1 27.59 ? N7N NDP 228 A 1 
HETATM 42 C C4N NDP . . . C 2 16.874 -5.008 -1.922 1 27.12 ? C4N NDP 228 A 1 
HETATM 43 C C5N NDP . . . C 2 16.321 -3.85 -1.376 1 26.79 ? C5N NDP 228 A 1 
HETATM 44 C C6N NDP . . . C 2 16.796 -2.602 -1.772 1 25.93 ? C6N NDP 228 A 1 
HETATM 45 P P2B NDP . . . C 2 13.967 7.808 7.337 1 26.78 ? P2B NDP 228 A 1 
HETATM 46 O O1X NDP . . . C 2 14.969 8.625 6.551 1 25.09 ? O1X NDP 228 A 1 
HETATM 47 O O2X NDP . . . C 2 12.585 8.034 6.775 1 25.86 ? O2X NDP 228 A 1 
HETATM 48 O O3X NDP . . . C 2 13.982 8.179 8.803 1 24.64 ? O3X NDP 228 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           344 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           48 
#