data_3ROA # _model_server_result.job_id jkn8fC1306XVic-KR4dGAw _model_server_result.datetime_utc '2024-11-23 21:49:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3roa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1}' # _entry.id 3ROA # _exptl.entry_id 3ROA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 381.471 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-ethyl-5-{(3R)-3-[3-methoxy-5-(morpholin-4-yl)phenyl]but-1-yn-1-yl}pyrimidine-2,4-diamine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3ROA _cell.length_a 42.71 _cell.length_b 42.71 _cell.length_c 229.47 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ROA _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # _chem_comp.formula 'C21 H27 N5 O2' _chem_comp.formula_weight 381.471 _chem_comp.id 06V _chem_comp.mon_nstd_flag . _chem_comp.name 6-ethyl-5-{(3R)-3-[3-methoxy-5-(morpholin-4-yl)phenyl]but-1-yn-1-yl}pyrimidine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 N1 06V doub 1 n y N1 C6 06V sing 2 n y N3 C2 06V sing 3 n y NAH C2 06V sing 4 n n N3 C4 06V doub 5 n y CAI C4 06V sing 6 n n C4 C5 06V sing 7 n y C5 CAK 06V sing 8 n n C5 C6 06V doub 9 n y C6 NAJ 06V sing 10 n n NAU CAA 06V sing 11 n n CAY CAA 06V sing 12 n n CAA HAA 06V sing 13 n n CAA HAAA 06V sing 14 n n NAH HNAH 06V sing 15 n n NAH HNAA 06V sing 16 n n CAZ CAI 06V sing 17 n n CAI HAI 06V sing 18 n n CAI HAIA 06V sing 19 n n NAJ HNAJ 06V sing 20 n n NAJ HNAB 06V sing 21 n n CAL CAK 06V trip 22 n n CAM CAL 06V sing 23 n n CAO CAM 06V sing 24 n n CAM CAN 06V sing 25 n n CAM HAM 06V sing 26 n n CAN HAN 06V sing 27 n n CAN HANA 06V sing 28 n n CAN HANB 06V sing 29 n n CAP CAO 06V doub 30 n y CAT CAO 06V sing 31 n y CAQ CAP 06V sing 32 n y CAP HAP 06V sing 33 n n OBA CAQ 06V sing 34 n n CAR CAQ 06V doub 35 n y CAR CAS 06V sing 36 n y CAR HAR 06V sing 37 n n NAU CAS 06V sing 38 n n CAS CAT 06V doub 39 n y CAT HAT 06V sing 40 n n CAV NAU 06V sing 41 n n CAW CAV 06V sing 42 n n CAV HAV 06V sing 43 n n CAV HAVA 06V sing 44 n n CAW OAX 06V sing 45 n n CAW HAW 06V sing 46 n n CAW HAWA 06V sing 47 n n OAX CAY 06V sing 48 n n CAY HAY 06V sing 49 n n CAY HAYA 06V sing 50 n n CAZ HAZ 06V sing 51 n n CAZ HAZA 06V sing 52 n n CAZ HAZB 06V sing 53 n n OBA CBB 06V sing 54 n n CBB HBB 06V sing 55 n n CBB HBBA 06V sing 56 n n CBB HBBB 06V sing 57 n n # _atom_sites.entry_id 3ROA _atom_sites.fract_transf_matrix[1][1] 0.023414 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023414 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004358 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 228 228 NDP NDP . D 3 06V A 1 1 1 06V 06V . E 4 CL A 1 229 1 CL CL . F 2 NDP B 1 228 228 NDP NDP . G 3 06V B 1 1 1 06V 06V . H 4 CL B 1 2 2 CL CL . I 5 HOH A 1 230 3 HOH HOH . I 5 HOH A 2 231 6 HOH HOH . I 5 HOH A 3 232 9 HOH HOH . I 5 HOH A 4 233 11 HOH HOH . I 5 HOH A 5 234 13 HOH HOH . I 5 HOH A 6 235 14 HOH HOH . I 5 HOH A 7 236 16 HOH HOH . I 5 HOH A 8 237 18 HOH HOH . I 5 HOH A 9 238 20 HOH HOH . I 5 HOH A 10 239 22 HOH HOH . I 5 HOH A 11 240 26 HOH HOH . I 5 HOH A 12 241 32 HOH HOH . I 5 HOH A 13 242 34 HOH HOH . I 5 HOH A 14 243 36 HOH HOH . I 5 HOH A 15 244 37 HOH HOH . I 5 HOH A 16 245 38 HOH HOH . I 5 HOH A 17 246 39 HOH HOH . I 5 HOH A 18 247 43 HOH HOH . I 5 HOH A 19 248 48 HOH HOH . I 5 HOH A 20 249 49 HOH HOH . I 5 HOH A 21 250 50 HOH HOH . I 5 HOH A 22 251 51 HOH HOH . I 5 HOH A 23 252 52 HOH HOH . I 5 HOH A 24 253 57 HOH HOH . I 5 HOH A 25 254 58 HOH HOH . I 5 HOH A 26 255 63 HOH HOH . I 5 HOH A 27 256 65 HOH HOH . I 5 HOH A 28 257 67 HOH HOH . I 5 HOH A 29 258 73 HOH HOH . I 5 HOH A 30 259 81 HOH HOH . I 5 HOH A 31 260 88 HOH HOH . I 5 HOH A 32 261 96 HOH HOH . I 5 HOH A 33 262 109 HOH HOH . I 5 HOH A 34 263 111 HOH HOH . I 5 HOH A 35 264 113 HOH HOH . J 5 HOH B 1 229 4 HOH HOH . J 5 HOH B 2 230 5 HOH HOH . J 5 HOH B 3 231 7 HOH HOH . J 5 HOH B 4 232 8 HOH HOH . J 5 HOH B 5 233 10 HOH HOH . J 5 HOH B 6 234 12 HOH HOH . J 5 HOH B 7 235 15 HOH HOH . J 5 HOH B 8 236 17 HOH HOH . J 5 HOH B 9 237 19 HOH HOH . J 5 HOH B 10 238 21 HOH HOH . J 5 HOH B 11 239 24 HOH HOH . J 5 HOH B 12 240 25 HOH HOH . J 5 HOH B 13 241 28 HOH HOH . J 5 HOH B 14 242 29 HOH HOH . J 5 HOH B 15 243 30 HOH HOH . J 5 HOH B 16 244 35 HOH HOH . J 5 HOH B 17 245 40 HOH HOH . J 5 HOH B 18 246 42 HOH HOH . J 5 HOH B 19 247 44 HOH HOH . J 5 HOH B 20 248 45 HOH HOH . J 5 HOH B 21 249 46 HOH HOH . J 5 HOH B 22 250 47 HOH HOH . J 5 HOH B 23 251 53 HOH HOH . J 5 HOH B 24 252 54 HOH HOH . J 5 HOH B 25 253 56 HOH HOH . J 5 HOH B 26 254 66 HOH HOH . J 5 HOH B 27 255 69 HOH HOH . J 5 HOH B 28 256 72 HOH HOH . J 5 HOH B 29 257 77 HOH HOH . J 5 HOH B 30 258 80 HOH HOH . J 5 HOH B 31 259 83 HOH HOH . J 5 HOH B 32 260 87 HOH HOH . J 5 HOH B 33 261 89 HOH HOH . J 5 HOH B 34 262 94 HOH HOH . J 5 HOH B 35 263 98 HOH HOH . J 5 HOH B 36 264 106 HOH HOH . J 5 HOH B 37 265 108 HOH HOH . J 5 HOH B 38 266 112 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 06V . . . D 3 16.345 -10.108 -2.15 1 31.75 ? N1 06V 1 A 1 HETATM 2 C C2 06V . . . D 3 16.521 -10.758 -3.372 1 32.8 ? C2 06V 1 A 1 HETATM 3 N N3 06V . . . D 3 15.968 -10.203 -4.537 1 33.27 ? N3 06V 1 A 1 HETATM 4 C C4 06V . . . D 3 15.234 -9.008 -4.491 1 33.18 ? C4 06V 1 A 1 HETATM 5 C C5 06V . . . D 3 15.07 -8.372 -3.259 1 32.9 ? C5 06V 1 A 1 HETATM 6 C C6 06V . . . D 3 15.622 -8.914 -2.085 1 32.19 ? C6 06V 1 A 1 HETATM 7 C CAA 06V . . . D 3 8.274 -6.768 -5.482 1 41.39 ? CAA 06V 1 A 1 HETATM 8 N NAH 06V . . . D 3 17.215 -11.894 -3.444 1 32.69 ? NAH 06V 1 A 1 HETATM 9 C CAI 06V . . . D 3 14.664 -8.451 -5.809 1 32.8 ? CAI 06V 1 A 1 HETATM 10 N NAJ 06V . . . D 3 15.476 -8.32 -0.901 1 31.96 ? NAJ 06V 1 A 1 HETATM 11 C CAK 06V . . . D 3 14.311 -7.169 -3.257 1 32.52 ? CAK 06V 1 A 1 HETATM 12 C CAL 06V . . . D 3 13.657 -6.144 -3.299 1 33.77 ? CAL 06V 1 A 1 HETATM 13 C CAM 06V . . . D 3 12.886 -4.89 -3.333 1 34.3 ? CAM 06V 1 A 1 HETATM 14 C CAN 06V . . . D 3 12.031 -4.754 -2.072 1 33.78 ? CAN 06V 1 A 1 HETATM 15 C CAO 06V . . . D 3 12.052 -4.722 -4.629 1 36.31 ? CAO 06V 1 A 1 HETATM 16 C CAP 06V . . . D 3 12.53 -3.799 -5.564 1 38.38 ? CAP 06V 1 A 1 HETATM 17 C CAQ 06V . . . D 3 11.844 -3.561 -6.755 1 39.08 ? CAQ 06V 1 A 1 HETATM 18 C CAR 06V . . . D 3 10.667 -4.264 -7.012 1 37.87 ? CAR 06V 1 A 1 HETATM 19 C CAS 06V . . . D 3 10.161 -5.186 -6.095 1 39.41 ? CAS 06V 1 A 1 HETATM 20 C CAT 06V . . . D 3 10.863 -5.422 -4.897 1 37.86 ? CAT 06V 1 A 1 HETATM 21 N NAU 06V . . . D 3 8.949 -5.862 -6.435 1 40.19 ? NAU 06V 1 A 1 HETATM 22 C CAV 06V . . . D 3 8.349 -5.641 -7.795 1 42.78 ? CAV 06V 1 A 1 HETATM 23 C CAW 06V . . . D 3 7.597 -6.872 -8.345 1 43.75 ? CAW 06V 1 A 1 HETATM 24 O OAX 06V . . . D 3 6.83 -7.647 -7.36 1 44.96 ? OAX 06V 1 A 1 HETATM 25 C CAY 06V . . . D 3 6.869 -7.13 -5.984 1 43.11 ? CAY 06V 1 A 1 HETATM 26 C CAZ 06V . . . D 3 13.987 -9.553 -6.607 1 34.04 ? CAZ 06V 1 A 1 HETATM 27 O OBA 06V . . . D 3 12.316 -2.679 -7.689 1 38.82 ? OBA 06V 1 A 1 HETATM 28 C CBB 06V . . . D 3 12.489 -1.343 -7.198 1 41.73 ? CBB 06V 1 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 28 #