data_3ROA # _model_server_result.job_id KVVFUNNnNBmy0L7VC70BfA _model_server_result.datetime_utc '2024-11-23 21:32:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3roa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":228}' # _entry.id 3ROA # _exptl.entry_id 3ROA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3ROA _cell.length_a 42.71 _cell.length_b 42.71 _cell.length_c 229.47 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ROA _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 294 n n PA O2A NDP sing 295 n n PA O5B NDP sing 296 n n PA O3 NDP sing 297 n n O2A HOA2 NDP sing 298 n n O5B C5B NDP sing 299 n n C5B C4B NDP sing 300 n n C5B H51A NDP sing 301 n n C5B H52A NDP sing 302 n n C4B O4B NDP sing 303 n n C4B C3B NDP sing 304 n n C4B H4B NDP sing 305 n n O4B C1B NDP sing 306 n n C3B O3B NDP sing 307 n n C3B C2B NDP sing 308 n n C3B H3B NDP sing 309 n n O3B HO3A NDP sing 310 n n C2B O2B NDP sing 311 n n C2B C1B NDP sing 312 n n C2B H2B NDP sing 313 n n O2B P2B NDP sing 314 n n C1B N9A NDP sing 315 n n C1B H1B NDP sing 316 n n N9A C8A NDP sing 317 n y N9A C4A NDP sing 318 n y C8A N7A NDP doub 319 n y C8A H8A NDP sing 320 n n N7A C5A NDP sing 321 n y C5A C6A NDP sing 322 n y C5A C4A NDP doub 323 n y C6A N6A NDP sing 324 n n C6A N1A NDP doub 325 n y N6A H61A NDP sing 326 n n N6A H62A NDP sing 327 n n N1A C2A NDP sing 328 n y C2A N3A NDP doub 329 n y C2A H2A NDP sing 330 n n N3A C4A NDP sing 331 n y O3 PN NDP sing 332 n n PN O1N NDP doub 333 n n PN O2N NDP sing 334 n n PN O5D NDP sing 335 n n O2N H21N NDP sing 336 n n O5D C5D NDP sing 337 n n C5D C4D NDP sing 338 n n C5D H51N NDP sing 339 n n C5D H52N NDP sing 340 n n C4D O4D NDP sing 341 n n C4D C3D NDP sing 342 n n C4D H4D NDP sing 343 n n O4D C1D NDP sing 344 n n C3D O3D NDP sing 345 n n C3D C2D NDP sing 346 n n C3D H3D NDP sing 347 n n O3D HO3N NDP sing 348 n n C2D O2D NDP sing 349 n n C2D C1D NDP sing 350 n n C2D H2D NDP sing 351 n n O2D HO2N NDP sing 352 n n C1D N1N NDP sing 353 n n C1D H1D NDP sing 354 n n N1N C2N NDP sing 355 n n N1N C6N NDP sing 356 n n C2N C3N NDP doub 357 n n C2N H2N NDP sing 358 n n C3N C7N NDP sing 359 n n C3N C4N NDP sing 360 n n C7N O7N NDP doub 361 n n C7N N7N NDP sing 362 n n N7N H71N NDP sing 363 n n N7N H72N NDP sing 364 n n C4N C5N NDP sing 365 n n C4N H41N NDP sing 366 n n C4N H42N NDP sing 367 n n C5N C6N NDP doub 368 n n C5N H5N NDP sing 369 n n C6N H6N NDP sing 370 n n P2B O1X NDP doub 371 n n P2B O2X NDP sing 372 n n P2B O3X NDP sing 373 n n O2X HOP2 NDP sing 374 n n O3X HOP3 NDP sing 375 n n # _atom_sites.entry_id 3ROA _atom_sites.fract_transf_matrix[1][1] 0.023414 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023414 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004358 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 228 228 NDP NDP . D 3 06V A 1 1 1 06V 06V . E 4 CL A 1 229 1 CL CL . F 2 NDP B 1 228 228 NDP NDP . G 3 06V B 1 1 1 06V 06V . H 4 CL B 1 2 2 CL CL . I 5 HOH A 1 230 3 HOH HOH . I 5 HOH A 2 231 6 HOH HOH . I 5 HOH A 3 232 9 HOH HOH . I 5 HOH A 4 233 11 HOH HOH . I 5 HOH A 5 234 13 HOH HOH . I 5 HOH A 6 235 14 HOH HOH . I 5 HOH A 7 236 16 HOH HOH . I 5 HOH A 8 237 18 HOH HOH . I 5 HOH A 9 238 20 HOH HOH . I 5 HOH A 10 239 22 HOH HOH . I 5 HOH A 11 240 26 HOH HOH . I 5 HOH A 12 241 32 HOH HOH . I 5 HOH A 13 242 34 HOH HOH . I 5 HOH A 14 243 36 HOH HOH . I 5 HOH A 15 244 37 HOH HOH . I 5 HOH A 16 245 38 HOH HOH . I 5 HOH A 17 246 39 HOH HOH . I 5 HOH A 18 247 43 HOH HOH . I 5 HOH A 19 248 48 HOH HOH . I 5 HOH A 20 249 49 HOH HOH . I 5 HOH A 21 250 50 HOH HOH . I 5 HOH A 22 251 51 HOH HOH . I 5 HOH A 23 252 52 HOH HOH . I 5 HOH A 24 253 57 HOH HOH . I 5 HOH A 25 254 58 HOH HOH . I 5 HOH A 26 255 63 HOH HOH . I 5 HOH A 27 256 65 HOH HOH . I 5 HOH A 28 257 67 HOH HOH . I 5 HOH A 29 258 73 HOH HOH . I 5 HOH A 30 259 81 HOH HOH . I 5 HOH A 31 260 88 HOH HOH . I 5 HOH A 32 261 96 HOH HOH . I 5 HOH A 33 262 109 HOH HOH . I 5 HOH A 34 263 111 HOH HOH . I 5 HOH A 35 264 113 HOH HOH . J 5 HOH B 1 229 4 HOH HOH . J 5 HOH B 2 230 5 HOH HOH . J 5 HOH B 3 231 7 HOH HOH . J 5 HOH B 4 232 8 HOH HOH . J 5 HOH B 5 233 10 HOH HOH . J 5 HOH B 6 234 12 HOH HOH . J 5 HOH B 7 235 15 HOH HOH . J 5 HOH B 8 236 17 HOH HOH . J 5 HOH B 9 237 19 HOH HOH . J 5 HOH B 10 238 21 HOH HOH . J 5 HOH B 11 239 24 HOH HOH . J 5 HOH B 12 240 25 HOH HOH . J 5 HOH B 13 241 28 HOH HOH . J 5 HOH B 14 242 29 HOH HOH . J 5 HOH B 15 243 30 HOH HOH . J 5 HOH B 16 244 35 HOH HOH . J 5 HOH B 17 245 40 HOH HOH . J 5 HOH B 18 246 42 HOH HOH . J 5 HOH B 19 247 44 HOH HOH . J 5 HOH B 20 248 45 HOH HOH . J 5 HOH B 21 249 46 HOH HOH . J 5 HOH B 22 250 47 HOH HOH . J 5 HOH B 23 251 53 HOH HOH . J 5 HOH B 24 252 54 HOH HOH . J 5 HOH B 25 253 56 HOH HOH . J 5 HOH B 26 254 66 HOH HOH . J 5 HOH B 27 255 69 HOH HOH . J 5 HOH B 28 256 72 HOH HOH . J 5 HOH B 29 257 77 HOH HOH . J 5 HOH B 30 258 80 HOH HOH . J 5 HOH B 31 259 83 HOH HOH . J 5 HOH B 32 260 87 HOH HOH . J 5 HOH B 33 261 89 HOH HOH . J 5 HOH B 34 262 94 HOH HOH . J 5 HOH B 35 263 98 HOH HOH . J 5 HOH B 36 264 106 HOH HOH . J 5 HOH B 37 265 108 HOH HOH . J 5 HOH B 38 266 112 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . C 2 17.115 1.84 2.663 1 29.77 ? PA NDP 228 A 1 HETATM 2 O O1A NDP . . . C 2 18.052 1.082 3.523 1 28.25 ? O1A NDP 228 A 1 HETATM 3 O O2A NDP . . . C 2 16.168 0.992 1.929 1 29 ? O2A NDP 228 A 1 HETATM 4 O O5B NDP . . . C 2 16.347 2.93 3.555 1 28.74 ? O5B NDP 228 A 1 HETATM 5 C C5B NDP . . . C 2 17.099 3.874 4.294 1 27.41 ? C5B NDP 228 A 1 HETATM 6 C C4B NDP . . . C 2 16.11 4.592 5.199 1 28.36 ? C4B NDP 228 A 1 HETATM 7 O O4B NDP . . . C 2 15.554 3.7 6.154 1 26.32 ? O4B NDP 228 A 1 HETATM 8 C C3B NDP . . . C 2 16.726 5.722 6.01 1 28.43 ? C3B NDP 228 A 1 HETATM 9 O O3B NDP . . . C 2 16.801 6.905 5.244 1 28.67 ? O3B NDP 228 A 1 HETATM 10 C C2B NDP . . . C 2 15.751 5.806 7.171 1 28.05 ? C2B NDP 228 A 1 HETATM 11 O O2B NDP . . . C 2 14.551 6.381 6.732 1 29.51 ? O2B NDP 228 A 1 HETATM 12 C C1B NDP . . . C 2 15.356 4.357 7.395 1 27.69 ? C1B NDP 228 A 1 HETATM 13 N N9A NDP . . . C 2 16.138 3.678 8.453 1 27.88 ? N9A NDP 228 A 1 HETATM 14 C C8A NDP . . . C 2 17.421 3.219 8.353 1 27.28 ? C8A NDP 228 A 1 HETATM 15 N N7A NDP . . . C 2 17.765 2.644 9.528 1 27.91 ? N7A NDP 228 A 1 HETATM 16 C C5A NDP . . . C 2 16.723 2.727 10.381 1 28.07 ? C5A NDP 228 A 1 HETATM 17 C C6A NDP . . . C 2 16.551 2.3 11.7 1 27.68 ? C6A NDP 228 A 1 HETATM 18 N N6A NDP . . . C 2 17.531 1.674 12.361 1 26.72 ? N6A NDP 228 A 1 HETATM 19 N N1A NDP . . . C 2 15.344 2.533 12.317 1 27.87 ? N1A NDP 228 A 1 HETATM 20 C C2A NDP . . . C 2 14.324 3.186 11.647 1 28.25 ? C2A NDP 228 A 1 HETATM 21 N N3A NDP . . . C 2 14.514 3.609 10.342 1 28.63 ? N3A NDP 228 A 1 HETATM 22 C C4A NDP . . . C 2 15.692 3.378 9.716 1 27.91 ? C4A NDP 228 A 1 HETATM 23 O O3 NDP . . . C 2 17.958 2.81 1.676 1 30.91 ? O3 NDP 228 A 1 HETATM 24 P PN NDP . . . C 2 19.349 2.616 0.912 1 31.04 ? PN NDP 228 A 1 HETATM 25 O O1N NDP . . . C 2 19.54 3.758 -0.009 1 33.73 ? O1N NDP 228 A 1 HETATM 26 O O2N NDP . . . C 2 20.42 2.282 1.861 1 33.54 ? O2N NDP 228 A 1 HETATM 27 O O5D NDP . . . C 2 19.044 1.311 0.039 1 31.09 ? O5D NDP 228 A 1 HETATM 28 C C5D NDP . . . C 2 18.192 1.403 -1.078 1 29.78 ? C5D NDP 228 A 1 HETATM 29 C C4D NDP . . . C 2 18.919 0.803 -2.273 1 29.51 ? C4D NDP 228 A 1 HETATM 30 O O4D NDP . . . C 2 19.09 -0.592 -2.065 1 28.59 ? O4D NDP 228 A 1 HETATM 31 C C3D NDP . . . C 2 18.135 0.987 -3.557 1 29.15 ? C3D NDP 228 A 1 HETATM 32 O O3D NDP . . . C 2 19.059 1.237 -4.586 1 29.9 ? O3D NDP 228 A 1 HETATM 33 C C2D NDP . . . C 2 17.519 -0.374 -3.772 1 30.42 ? C2D NDP 228 A 1 HETATM 34 O O2D NDP . . . C 2 17.332 -0.663 -5.139 1 31.56 ? O2D NDP 228 A 1 HETATM 35 C C1D NDP . . . C 2 18.548 -1.309 -3.147 1 28.63 ? C1D NDP 228 A 1 HETATM 36 N N1N NDP . . . C 2 17.962 -2.604 -2.769 1 28.33 ? N1N NDP 228 A 1 HETATM 37 C C2N NDP . . . C 2 18.517 -3.716 -3.325 1 27.26 ? C2N NDP 228 A 1 HETATM 38 C C3N NDP . . . C 2 18.02 -4.979 -3.037 1 27.75 ? C3N NDP 228 A 1 HETATM 39 C C7N NDP . . . C 2 18.656 -6.183 -3.66 1 26.97 ? C7N NDP 228 A 1 HETATM 40 O O7N NDP . . . C 2 18.374 -7.453 -3.121 1 25.64 ? O7N NDP 228 A 1 HETATM 41 N N7N NDP . . . C 2 19.474 -6.032 -4.712 1 26.28 ? N7N NDP 228 A 1 HETATM 42 C C4N NDP . . . C 2 16.929 -5.107 -2.162 1 28.96 ? C4N NDP 228 A 1 HETATM 43 C C5N NDP . . . C 2 16.357 -3.965 -1.597 1 28.74 ? C5N NDP 228 A 1 HETATM 44 C C6N NDP . . . C 2 16.88 -2.705 -1.913 1 29.55 ? C6N NDP 228 A 1 HETATM 45 P P2B NDP . . . C 2 14.182 7.939 6.907 1 28.96 ? P2B NDP 228 A 1 HETATM 46 O O1X NDP . . . C 2 15.146 8.736 6.062 1 27.62 ? O1X NDP 228 A 1 HETATM 47 O O2X NDP . . . C 2 12.756 8.104 6.432 1 31.36 ? O2X NDP 228 A 1 HETATM 48 O O3X NDP . . . C 2 14.223 8.303 8.362 1 28.64 ? O3X NDP 228 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #