data_3ROD
#
_model_server_result.job_id            c0jyezGIXB8RINYIa6Q3CQ 
_model_server_result.datetime_utc      '2024-11-17 02:30:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3rod 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":302}' 
#
_entry.id    3ROD 
#
_exptl.entry_id    3ROD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              122.125 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         106.57 
_cell.angle_beta          103.98 
_cell.angle_gamma         104.14 
_cell.entry_id            3ROD 
_cell.length_a            60.663 
_cell.length_b            61.793 
_cell.length_c            74.342 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3ROD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,M 1 1 
B,G,H,N 2 1 
C,I,J,O 3 1 
D,K,L,P 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
_chem_comp.formula           'C6 H6 N2 O' 
_chem_comp.formula_weight    122.125 
_chem_comp.id                NCA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 NCA doub 237 n y 
N1 C6 NCA sing 238 n y 
C2 C3 NCA sing 239 n y 
C2 H2 NCA sing 240 n n 
C3 C4 NCA doub 241 n y 
C3 C7 NCA sing 242 n n 
C4 C5 NCA sing 243 n y 
C4 H4 NCA sing 244 n n 
C5 C6 NCA doub 245 n y 
C5 H5 NCA sing 246 n n 
C6 H6 NCA sing 247 n n 
C7 O7 NCA doub 248 n n 
C7 N7 NCA sing 249 n n 
N7 HN71 NCA sing 250 n n 
N7 HN72 NCA sing 251 n n 
#
_atom_sites.entry_id                     3ROD 
_atom_sites.fract_transf_matrix[1][1]    0.016485 
_atom_sites.fract_transf_matrix[1][2]    0.004153 
_atom_sites.fract_transf_matrix[1][3]    0.006042 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016689 
_atom_sites.fract_transf_matrix[2][3]    0.006559 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014894 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 SAH A 1 301 301 SAH SAH . 
F 3 NCA A 1 302 302 NCA NCA . 
G 2 SAH B 1 301 301 SAH SAH . 
H 3 NCA B 1 302 302 NCA NCA . 
I 2 SAH C 1 301 301 SAH SAH . 
J 3 NCA C 1 302 302 NCA NCA . 
K 2 SAH D 1 301 301 SAH SAH . 
L 3 NCA D 1 302 302 NCA NCA . 
M 4 HOH A 1 402 402 HOH HOH . 
M 4 HOH A 2 403 403 HOH HOH . 
M 4 HOH A 3 407 407 HOH HOH . 
M 4 HOH A 4 420 420 HOH HOH . 
M 4 HOH A 5 424 424 HOH HOH . 
M 4 HOH A 6 427 427 HOH HOH . 
M 4 HOH A 7 428 428 HOH HOH . 
M 4 HOH A 8 429 429 HOH HOH . 
M 4 HOH A 9 430 430 HOH HOH . 
M 4 HOH A 10 431 431 HOH HOH . 
M 4 HOH A 11 432 432 HOH HOH . 
M 4 HOH A 12 434 434 HOH HOH . 
M 4 HOH A 13 435 435 HOH HOH . 
M 4 HOH A 14 438 438 HOH HOH . 
M 4 HOH A 15 439 439 HOH HOH . 
M 4 HOH A 16 441 441 HOH HOH . 
M 4 HOH A 17 442 442 HOH HOH . 
M 4 HOH A 18 443 443 HOH HOH . 
N 4 HOH B 1 400 400 HOH HOH . 
N 4 HOH B 2 405 405 HOH HOH . 
N 4 HOH B 3 408 408 HOH HOH . 
N 4 HOH B 4 410 410 HOH HOH . 
N 4 HOH B 5 411 411 HOH HOH . 
N 4 HOH B 6 415 415 HOH HOH . 
N 4 HOH B 7 417 417 HOH HOH . 
N 4 HOH B 8 425 425 HOH HOH . 
N 4 HOH B 9 436 436 HOH HOH . 
N 4 HOH B 10 437 437 HOH HOH . 
N 4 HOH B 11 440 440 HOH HOH . 
N 4 HOH B 12 448 448 HOH HOH . 
N 4 HOH B 13 449 449 HOH HOH . 
O 4 HOH C 1 401 401 HOH HOH . 
O 4 HOH C 2 404 404 HOH HOH . 
O 4 HOH C 3 406 406 HOH HOH . 
O 4 HOH C 4 409 409 HOH HOH . 
O 4 HOH C 5 412 412 HOH HOH . 
O 4 HOH C 6 413 413 HOH HOH . 
O 4 HOH C 7 416 416 HOH HOH . 
O 4 HOH C 8 418 418 HOH HOH . 
O 4 HOH C 9 419 419 HOH HOH . 
O 4 HOH C 10 421 421 HOH HOH . 
O 4 HOH C 11 423 423 HOH HOH . 
O 4 HOH C 12 426 426 HOH HOH . 
O 4 HOH C 13 433 433 HOH HOH . 
O 4 HOH C 14 444 444 HOH HOH . 
O 4 HOH C 15 445 445 HOH HOH . 
O 4 HOH C 16 446 446 HOH HOH . 
P 4 HOH D 1 414 414 HOH HOH . 
P 4 HOH D 2 422 422 HOH HOH . 
P 4 HOH D 3 447 447 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 NCA . . . H 3 7.487 -3.772 3.806 1 36.55 ? N1 NCA 302 B 1 
HETATM 2 C C2 NCA . . . H 3 6.963 -3.822 5.047 1 37.15 ? C2 NCA 302 B 1 
HETATM 3 C C3 NCA . . . H 3 6.801 -5.038 5.694 1 38.32 ? C3 NCA 302 B 1 
HETATM 4 C C4 NCA . . . H 3 7.197 -6.183 5.027 1 37.27 ? C4 NCA 302 B 1 
HETATM 5 C C5 NCA . . . H 3 7.736 -6.092 3.75 1 36.67 ? C5 NCA 302 B 1 
HETATM 6 C C6 NCA . . . H 3 7.877 -4.86 3.146 1 35.48 ? C6 NCA 302 B 1 
HETATM 7 C C7 NCA . . . H 3 6.21 -5.141 7.094 1 41.15 ? C7 NCA 302 B 1 
HETATM 8 O O7 NCA . . . H 3 6.471 -6.109 7.815 1 43.62 ? O7 NCA 302 B 1 
HETATM 9 N N7 NCA . . . H 3 5.395 -4.195 7.582 1 42.31 ? N7 NCA 302 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           377 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           9 
#