data_3ROL # _model_server_result.job_id Y3Im4C4DDROrRTtn_J2Z0Q _model_server_result.datetime_utc '2024-11-02 13:36:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rol # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":276}' # _entry.id 3ROL # _exptl.entry_id 3ROL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.71 _cell.angle_gamma 90 _cell.entry_id 3ROL _cell.length_a 50.466 _cell.length_b 88.496 _cell.length_c 119.05 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ROL _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,K,L 1 1 C,D,F,H,I,J,M,N,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf3 B SG CYS 25 B CYS 25 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf4 C SG CYS 101 C CYS 101 1_555 C SG CYS 164 C CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? disulf ? disulf5 C SG CYS 203 C CYS 203 1_555 C SG CYS 259 C CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 D SG CYS 25 D CYS 25 1_555 D SG CYS 80 D CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 E C VAL 2 E VAL 2 1_555 E N NIY 3 E NIY 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 E C NIY 3 E NIY 3 1_555 E N ASN 4 E ASN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 F C VAL 2 F VAL 2 1_555 F N NIY 3 F NIY 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale4 F C NIY 3 F NIY 3 1_555 F N ASN 4 F ASN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3ROL _atom_sites.fract_transf_matrix[1][1] 0.019815 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001633 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0113 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008428 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 PO4 A 1 276 276 PO4 PO4 . H 5 GOL C 1 276 276 GOL GOL . I 4 PO4 C 1 278 278 PO4 PO4 . J 6 MPD D 1 277 277 MPD MPD . K 7 HOH A 1 277 277 HOH HOH . K 7 HOH A 2 278 278 HOH HOH . K 7 HOH A 3 279 279 HOH HOH . K 7 HOH A 4 280 280 HOH HOH . K 7 HOH A 5 281 281 HOH HOH . K 7 HOH A 6 282 282 HOH HOH . K 7 HOH A 7 283 283 HOH HOH . K 7 HOH A 8 284 284 HOH HOH . K 7 HOH A 9 285 285 HOH HOH . K 7 HOH A 10 286 286 HOH HOH . K 7 HOH A 11 287 287 HOH HOH . K 7 HOH A 12 288 288 HOH HOH . K 7 HOH A 13 289 289 HOH HOH . K 7 HOH A 14 290 290 HOH HOH . K 7 HOH A 15 291 291 HOH HOH . K 7 HOH A 16 292 292 HOH HOH . K 7 HOH A 17 293 293 HOH HOH . K 7 HOH A 18 294 294 HOH HOH . K 7 HOH A 19 295 295 HOH HOH . K 7 HOH A 20 296 296 HOH HOH . K 7 HOH A 21 297 297 HOH HOH . K 7 HOH A 22 298 298 HOH HOH . K 7 HOH A 23 299 299 HOH HOH . K 7 HOH A 24 300 300 HOH HOH . K 7 HOH A 25 301 301 HOH HOH . K 7 HOH A 26 302 302 HOH HOH . K 7 HOH A 27 303 303 HOH HOH . K 7 HOH A 28 304 304 HOH HOH . K 7 HOH A 29 305 305 HOH HOH . K 7 HOH A 30 306 306 HOH HOH . K 7 HOH A 31 307 307 HOH HOH . K 7 HOH A 32 308 308 HOH HOH . K 7 HOH A 33 309 309 HOH HOH . K 7 HOH A 34 310 310 HOH HOH . K 7 HOH A 35 311 311 HOH HOH . K 7 HOH A 36 312 312 HOH HOH . K 7 HOH A 37 313 313 HOH HOH . K 7 HOH A 38 314 314 HOH HOH . K 7 HOH A 39 315 315 HOH HOH . K 7 HOH A 40 316 316 HOH HOH . K 7 HOH A 41 317 317 HOH HOH . K 7 HOH A 42 318 318 HOH HOH . K 7 HOH A 43 319 319 HOH HOH . K 7 HOH A 44 320 320 HOH HOH . K 7 HOH A 45 321 321 HOH HOH . K 7 HOH A 46 322 322 HOH HOH . K 7 HOH A 47 323 323 HOH HOH . K 7 HOH A 48 324 324 HOH HOH . K 7 HOH A 49 325 325 HOH HOH . K 7 HOH A 50 326 326 HOH HOH . K 7 HOH A 51 327 327 HOH HOH . K 7 HOH A 52 328 328 HOH HOH . K 7 HOH A 53 329 329 HOH HOH . K 7 HOH A 54 330 330 HOH HOH . K 7 HOH A 55 331 331 HOH HOH . K 7 HOH A 56 332 332 HOH HOH . K 7 HOH A 57 333 333 HOH HOH . K 7 HOH A 58 334 334 HOH HOH . K 7 HOH A 59 335 335 HOH HOH . K 7 HOH A 60 336 336 HOH HOH . K 7 HOH A 61 337 337 HOH HOH . K 7 HOH A 62 338 338 HOH HOH . K 7 HOH A 63 339 339 HOH HOH . K 7 HOH A 64 340 340 HOH HOH . K 7 HOH A 65 341 341 HOH HOH . K 7 HOH A 66 342 342 HOH HOH . K 7 HOH A 67 343 343 HOH HOH . K 7 HOH A 68 344 344 HOH HOH . K 7 HOH A 69 345 345 HOH HOH . K 7 HOH A 70 346 346 HOH HOH . K 7 HOH A 71 347 226 HOH HOH . K 7 HOH A 72 348 227 HOH HOH . L 7 HOH B 1 100 100 HOH HOH . L 7 HOH B 2 101 101 HOH HOH . L 7 HOH B 3 102 102 HOH HOH . L 7 HOH B 4 103 103 HOH HOH . L 7 HOH B 5 104 104 HOH HOH . L 7 HOH B 6 105 105 HOH HOH . L 7 HOH B 7 106 106 HOH HOH . L 7 HOH B 8 107 107 HOH HOH . L 7 HOH B 9 110 110 HOH HOH . L 7 HOH B 10 124 124 HOH HOH . L 7 HOH B 11 152 152 HOH HOH . L 7 HOH B 12 156 156 HOH HOH . L 7 HOH B 13 160 160 HOH HOH . L 7 HOH B 14 161 161 HOH HOH . L 7 HOH B 15 162 162 HOH HOH . L 7 HOH B 16 174 174 HOH HOH . L 7 HOH B 17 185 185 HOH HOH . L 7 HOH B 18 201 201 HOH HOH . L 7 HOH B 19 210 210 HOH HOH . L 7 HOH B 20 218 218 HOH HOH . L 7 HOH B 21 219 219 HOH HOH . L 7 HOH B 22 228 228 HOH HOH . L 7 HOH B 23 242 242 HOH HOH . M 7 HOH C 1 277 225 HOH HOH . M 7 HOH C 2 279 279 HOH HOH . M 7 HOH C 3 280 280 HOH HOH . M 7 HOH C 4 281 281 HOH HOH . M 7 HOH C 5 282 282 HOH HOH . M 7 HOH C 6 283 283 HOH HOH . M 7 HOH C 7 284 284 HOH HOH . M 7 HOH C 8 285 285 HOH HOH . M 7 HOH C 9 286 286 HOH HOH . M 7 HOH C 10 287 287 HOH HOH . M 7 HOH C 11 288 288 HOH HOH . M 7 HOH C 12 289 289 HOH HOH . M 7 HOH C 13 290 290 HOH HOH . M 7 HOH C 14 291 291 HOH HOH . M 7 HOH C 15 292 292 HOH HOH . M 7 HOH C 16 293 293 HOH HOH . M 7 HOH C 17 294 294 HOH HOH . M 7 HOH C 18 295 295 HOH HOH . M 7 HOH C 19 296 296 HOH HOH . M 7 HOH C 20 297 297 HOH HOH . M 7 HOH C 21 298 298 HOH HOH . M 7 HOH C 22 299 299 HOH HOH . M 7 HOH C 23 300 300 HOH HOH . M 7 HOH C 24 301 301 HOH HOH . M 7 HOH C 25 302 302 HOH HOH . M 7 HOH C 26 303 303 HOH HOH . M 7 HOH C 27 304 304 HOH HOH . M 7 HOH C 28 305 305 HOH HOH . M 7 HOH C 29 306 306 HOH HOH . M 7 HOH C 30 307 307 HOH HOH . M 7 HOH C 31 308 308 HOH HOH . M 7 HOH C 32 309 309 HOH HOH . M 7 HOH C 33 310 310 HOH HOH . M 7 HOH C 34 311 311 HOH HOH . M 7 HOH C 35 312 312 HOH HOH . M 7 HOH C 36 313 313 HOH HOH . M 7 HOH C 37 314 314 HOH HOH . M 7 HOH C 38 315 315 HOH HOH . M 7 HOH C 39 316 316 HOH HOH . M 7 HOH C 40 317 317 HOH HOH . M 7 HOH C 41 318 318 HOH HOH . M 7 HOH C 42 319 319 HOH HOH . M 7 HOH C 43 320 320 HOH HOH . M 7 HOH C 44 321 321 HOH HOH . M 7 HOH C 45 322 322 HOH HOH . M 7 HOH C 46 323 323 HOH HOH . M 7 HOH C 47 324 324 HOH HOH . M 7 HOH C 48 326 326 HOH HOH . M 7 HOH C 49 327 327 HOH HOH . M 7 HOH C 50 328 328 HOH HOH . M 7 HOH C 51 329 329 HOH HOH . M 7 HOH C 52 330 330 HOH HOH . M 7 HOH C 53 331 331 HOH HOH . M 7 HOH C 54 332 332 HOH HOH . M 7 HOH C 55 333 333 HOH HOH . M 7 HOH C 56 334 334 HOH HOH . M 7 HOH C 57 335 335 HOH HOH . M 7 HOH C 58 336 336 HOH HOH . M 7 HOH C 59 337 337 HOH HOH . M 7 HOH C 60 338 338 HOH HOH . M 7 HOH C 61 339 339 HOH HOH . M 7 HOH C 62 340 340 HOH HOH . M 7 HOH C 63 341 341 HOH HOH . M 7 HOH C 64 342 342 HOH HOH . M 7 HOH C 65 343 343 HOH HOH . M 7 HOH C 66 344 344 HOH HOH . M 7 HOH C 67 345 345 HOH HOH . M 7 HOH C 68 346 346 HOH HOH . M 7 HOH C 69 347 347 HOH HOH . M 7 HOH C 70 348 348 HOH HOH . M 7 HOH C 71 349 349 HOH HOH . M 7 HOH C 72 350 350 HOH HOH . M 7 HOH C 73 351 351 HOH HOH . M 7 HOH C 74 352 352 HOH HOH . M 7 HOH C 75 353 353 HOH HOH . M 7 HOH C 76 354 354 HOH HOH . M 7 HOH C 77 355 355 HOH HOH . M 7 HOH C 78 356 356 HOH HOH . M 7 HOH C 79 357 357 HOH HOH . M 7 HOH C 80 358 358 HOH HOH . M 7 HOH C 81 359 359 HOH HOH . M 7 HOH C 82 360 360 HOH HOH . M 7 HOH C 83 361 361 HOH HOH . M 7 HOH C 84 362 362 HOH HOH . M 7 HOH C 85 363 363 HOH HOH . M 7 HOH C 86 364 364 HOH HOH . M 7 HOH C 87 365 365 HOH HOH . M 7 HOH C 88 366 366 HOH HOH . M 7 HOH C 89 367 367 HOH HOH . M 7 HOH C 90 368 368 HOH HOH . M 7 HOH C 91 369 369 HOH HOH . M 7 HOH C 92 371 371 HOH HOH . M 7 HOH C 93 372 372 HOH HOH . N 7 HOH D 1 100 100 HOH HOH . N 7 HOH D 2 101 101 HOH HOH . N 7 HOH D 3 102 102 HOH HOH . N 7 HOH D 4 103 103 HOH HOH . N 7 HOH D 5 104 104 HOH HOH . N 7 HOH D 6 105 105 HOH HOH . N 7 HOH D 7 106 106 HOH HOH . N 7 HOH D 8 107 107 HOH HOH . N 7 HOH D 9 108 108 HOH HOH . N 7 HOH D 10 109 109 HOH HOH . N 7 HOH D 11 110 110 HOH HOH . N 7 HOH D 12 111 111 HOH HOH . N 7 HOH D 13 112 112 HOH HOH . N 7 HOH D 14 113 113 HOH HOH . N 7 HOH D 15 114 114 HOH HOH . N 7 HOH D 16 115 115 HOH HOH . N 7 HOH D 17 116 116 HOH HOH . N 7 HOH D 18 117 117 HOH HOH . N 7 HOH D 19 118 118 HOH HOH . N 7 HOH D 20 119 119 HOH HOH . N 7 HOH D 21 120 120 HOH HOH . N 7 HOH D 22 121 121 HOH HOH . N 7 HOH D 23 122 122 HOH HOH . N 7 HOH D 24 123 123 HOH HOH . N 7 HOH D 25 124 124 HOH HOH . N 7 HOH D 26 125 125 HOH HOH . N 7 HOH D 27 126 126 HOH HOH . N 7 HOH D 28 127 127 HOH HOH . N 7 HOH D 29 128 128 HOH HOH . N 7 HOH D 30 129 129 HOH HOH . N 7 HOH D 31 130 130 HOH HOH . N 7 HOH D 32 131 131 HOH HOH . N 7 HOH D 33 132 132 HOH HOH . N 7 HOH D 34 133 133 HOH HOH . N 7 HOH D 35 136 136 HOH HOH . N 7 HOH D 36 140 140 HOH HOH . N 7 HOH D 37 142 142 HOH HOH . N 7 HOH D 38 155 155 HOH HOH . N 7 HOH D 39 158 158 HOH HOH . N 7 HOH D 40 167 167 HOH HOH . N 7 HOH D 41 186 186 HOH HOH . N 7 HOH D 42 191 191 HOH HOH . N 7 HOH D 43 195 195 HOH HOH . N 7 HOH D 44 196 196 HOH HOH . N 7 HOH D 45 204 204 HOH HOH . N 7 HOH D 46 212 212 HOH HOH . N 7 HOH D 47 215 215 HOH HOH . N 7 HOH D 48 223 223 HOH HOH . N 7 HOH D 49 230 230 HOH HOH . N 7 HOH D 50 234 234 HOH HOH . N 7 HOH D 51 241 241 HOH HOH . N 7 HOH D 52 244 244 HOH HOH . N 7 HOH D 53 246 246 HOH HOH . N 7 HOH D 54 325 325 HOH HOH . N 7 HOH D 55 370 370 HOH HOH . O 7 HOH F 1 27 27 HOH HOH . O 7 HOH F 2 68 68 HOH HOH . O 7 HOH F 3 114 114 HOH HOH . O 7 HOH F 4 147 147 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 5 -2.57 -2.385 -59.011 1 26.58 ? C1 GOL 276 C 1 HETATM 2 O O1 GOL . . . H 5 -2.352 -1.898 -60.307 1 22.73 ? O1 GOL 276 C 1 HETATM 3 C C2 GOL . . . H 5 -3.258 -1.315 -58.178 1 28.83 ? C2 GOL 276 C 1 HETATM 4 O O2 GOL . . . H 5 -2.318 -0.379 -57.694 1 29.68 ? O2 GOL 276 C 1 HETATM 5 C C3 GOL . . . H 5 -4.134 -1.916 -57.063 1 28.93 ? C3 GOL 276 C 1 HETATM 6 O O3 GOL . . . H 5 -3.965 -1.325 -55.796 1 27.46 ? O3 GOL 276 C 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 6 #