data_3RP7 # _model_server_result.job_id Ohhle3FmJMg2PBxazWNTXA _model_server_result.datetime_utc '2024-12-26 11:26:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rp7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":7579}' # _entry.id 3RP7 # _exptl.entry_id 3RP7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 168.11 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'URIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3RP7 _cell.length_a 67.023 _cell.length_b 67.84 _cell.length_c 82.236 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RP7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 23 A HIS 0 1_555 A N MSE 24 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C MSE 24 A MSE 1 1_555 A N LYS 25 A LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 A C CYS 74 A CYS 51 1_555 A N MSE 75 A MSE 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C MSE 75 A MSE 52 1_555 A N ALA 76 A ALA 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C GLY 79 A GLY 56 1_555 A N MSE 80 A MSE 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 A C MSE 80 A MSE 57 1_555 A N GLY 81 A GLY 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 A C ILE 83 A ILE 60 1_555 A N MSE 84 A MSE 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale8 A C MSE 84 A MSE 61 1_555 A N GLU 85 A GLU 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 A C ARG 93 A ARG 70 1_555 A N MSE 94 A MSE 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale10 A C MSE 94 A MSE 71 1_555 A N ALA 95 A ALA 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale11 A C ASN 104 A ASN 81 1_555 A N MSE 105 A MSE 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale12 A C MSE 105 A MSE 82 1_555 A N THR 106 A THR 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale13 A C GLU 132 A GLU 109 1_555 A N MSE 133 A MSE 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale14 A C MSE 133 A MSE 110 1_555 A N LEU 134 A LEU 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale15 A C LEU 230 A LEU 207 1_555 A N MSE 231 A MSE 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale16 A C MSE 231 A MSE 208 1_555 A N PRO 232 A PRO 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale17 A C ALA 324 A ALA 301 1_555 A N MSE 325 A MSE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale18 A C MSE 325 A MSE 302 1_555 A N GLU 326 A GLU 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale19 A C ASP 374 A ASP 351 1_555 A N MSE 375 A MSE 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale20 A C MSE 375 A MSE 352 1_555 A N GLN 376 A GLN 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale21 A C GLY 396 A GLY 373 1_555 A N MSE 397 A MSE 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale22 A C MSE 397 A MSE 374 1_555 A N CYS 398 A CYS 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C5 H4 N4 O3' _chem_comp.formula_weight 168.11 _chem_comp.id URC _chem_comp.mon_nstd_flag . _chem_comp.name 'URIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 7,9-DIHYDRO-1H-PURINE-2,6,8(3H)-TRIONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 URC sing 449 n y N1 C6 URC sing 450 n y N1 HN1 URC sing 451 n n C2 N3 URC sing 452 n y C2 O11 URC doub 453 n n C6 C5 URC sing 454 n y C6 O13 URC doub 455 n n N3 C4 URC sing 456 n y N3 HN3 URC sing 457 n n C4 C5 URC doub 458 n y C4 N9 URC sing 459 n y C5 N7 URC sing 460 n y N9 C8 URC sing 461 n y N9 HN9 URC sing 462 n n N7 C8 URC sing 463 n y N7 HN7 URC sing 464 n n C8 O24 URC doub 465 n n # _atom_sites.entry_id 3RP7 _atom_sites.fract_transf_matrix[1][1] 0.01492 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014741 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01216 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 URC A 1 7579 7579 URC URC . C 3 FAD A 1 385 1 FAD FAD . D 4 HOH A 1 386 1 HOH HOH . D 4 HOH A 2 387 2 HOH HOH . D 4 HOH A 3 388 3 HOH HOH . D 4 HOH A 4 389 4 HOH HOH . D 4 HOH A 5 390 5 HOH HOH . D 4 HOH A 6 391 6 HOH HOH . D 4 HOH A 7 392 7 HOH HOH . D 4 HOH A 8 393 8 HOH HOH . D 4 HOH A 9 394 9 HOH HOH . D 4 HOH A 10 395 10 HOH HOH . D 4 HOH A 11 396 11 HOH HOH . D 4 HOH A 12 397 12 HOH HOH . D 4 HOH A 13 398 13 HOH HOH . D 4 HOH A 14 399 14 HOH HOH . D 4 HOH A 15 400 15 HOH HOH . D 4 HOH A 16 401 16 HOH HOH . D 4 HOH A 17 402 17 HOH HOH . D 4 HOH A 18 403 18 HOH HOH . D 4 HOH A 19 404 19 HOH HOH . D 4 HOH A 20 405 20 HOH HOH . D 4 HOH A 21 406 21 HOH HOH . D 4 HOH A 22 407 22 HOH HOH . D 4 HOH A 23 408 23 HOH HOH . D 4 HOH A 24 409 24 HOH HOH . D 4 HOH A 25 410 25 HOH HOH . D 4 HOH A 26 411 26 HOH HOH . D 4 HOH A 27 412 27 HOH HOH . D 4 HOH A 28 413 28 HOH HOH . D 4 HOH A 29 414 29 HOH HOH . D 4 HOH A 30 415 30 HOH HOH . D 4 HOH A 31 416 31 HOH HOH . D 4 HOH A 32 417 32 HOH HOH . D 4 HOH A 33 418 33 HOH HOH . D 4 HOH A 34 419 34 HOH HOH . D 4 HOH A 35 420 35 HOH HOH . D 4 HOH A 36 421 36 HOH HOH . D 4 HOH A 37 422 37 HOH HOH . D 4 HOH A 38 423 38 HOH HOH . D 4 HOH A 39 424 39 HOH HOH . D 4 HOH A 40 425 40 HOH HOH . D 4 HOH A 41 426 41 HOH HOH . D 4 HOH A 42 427 42 HOH HOH . D 4 HOH A 43 428 43 HOH HOH . D 4 HOH A 44 429 44 HOH HOH . D 4 HOH A 45 430 45 HOH HOH . D 4 HOH A 46 431 46 HOH HOH . D 4 HOH A 47 432 47 HOH HOH . D 4 HOH A 48 433 48 HOH HOH . D 4 HOH A 49 434 50 HOH HOH . D 4 HOH A 50 435 51 HOH HOH . D 4 HOH A 51 436 52 HOH HOH . D 4 HOH A 52 437 53 HOH HOH . D 4 HOH A 53 438 54 HOH HOH . D 4 HOH A 54 439 55 HOH HOH . D 4 HOH A 55 440 56 HOH HOH . D 4 HOH A 56 441 57 HOH HOH . D 4 HOH A 57 442 58 HOH HOH . D 4 HOH A 58 443 59 HOH HOH . D 4 HOH A 59 444 60 HOH HOH . D 4 HOH A 60 445 61 HOH HOH . D 4 HOH A 61 446 62 HOH HOH . D 4 HOH A 62 447 63 HOH HOH . D 4 HOH A 63 448 64 HOH HOH . D 4 HOH A 64 449 65 HOH HOH . D 4 HOH A 65 450 66 HOH HOH . D 4 HOH A 66 451 67 HOH HOH . D 4 HOH A 67 452 68 HOH HOH . D 4 HOH A 68 453 69 HOH HOH . D 4 HOH A 69 454 70 HOH HOH . D 4 HOH A 70 455 71 HOH HOH . D 4 HOH A 71 456 72 HOH HOH . D 4 HOH A 72 457 73 HOH HOH . D 4 HOH A 73 458 74 HOH HOH . D 4 HOH A 74 459 75 HOH HOH . D 4 HOH A 75 460 76 HOH HOH . D 4 HOH A 76 461 77 HOH HOH . D 4 HOH A 77 462 78 HOH HOH . D 4 HOH A 78 463 79 HOH HOH . D 4 HOH A 79 464 80 HOH HOH . D 4 HOH A 80 465 81 HOH HOH . D 4 HOH A 81 466 82 HOH HOH . D 4 HOH A 82 467 83 HOH HOH . D 4 HOH A 83 468 84 HOH HOH . D 4 HOH A 84 469 85 HOH HOH . D 4 HOH A 85 470 86 HOH HOH . D 4 HOH A 86 471 87 HOH HOH . D 4 HOH A 87 472 88 HOH HOH . D 4 HOH A 88 473 89 HOH HOH . D 4 HOH A 89 474 90 HOH HOH . D 4 HOH A 90 475 91 HOH HOH . D 4 HOH A 91 476 92 HOH HOH . D 4 HOH A 92 477 93 HOH HOH . D 4 HOH A 93 478 94 HOH HOH . D 4 HOH A 94 479 96 HOH HOH . D 4 HOH A 95 480 97 HOH HOH . D 4 HOH A 96 481 98 HOH HOH . D 4 HOH A 97 482 99 HOH HOH . D 4 HOH A 98 483 101 HOH HOH . D 4 HOH A 99 484 102 HOH HOH . D 4 HOH A 100 485 103 HOH HOH . D 4 HOH A 101 486 104 HOH HOH . D 4 HOH A 102 487 105 HOH HOH . D 4 HOH A 103 488 106 HOH HOH . D 4 HOH A 104 489 107 HOH HOH . D 4 HOH A 105 490 108 HOH HOH . D 4 HOH A 106 491 109 HOH HOH . D 4 HOH A 107 492 110 HOH HOH . D 4 HOH A 108 493 111 HOH HOH . D 4 HOH A 109 494 113 HOH HOH . D 4 HOH A 110 495 114 HOH HOH . D 4 HOH A 111 496 115 HOH HOH . D 4 HOH A 112 497 116 HOH HOH . D 4 HOH A 113 498 117 HOH HOH . D 4 HOH A 114 499 118 HOH HOH . D 4 HOH A 115 500 119 HOH HOH . D 4 HOH A 116 501 120 HOH HOH . D 4 HOH A 117 502 122 HOH HOH . D 4 HOH A 118 503 123 HOH HOH . D 4 HOH A 119 504 124 HOH HOH . D 4 HOH A 120 505 125 HOH HOH . D 4 HOH A 121 506 127 HOH HOH . D 4 HOH A 122 507 128 HOH HOH . D 4 HOH A 123 508 129 HOH HOH . D 4 HOH A 124 509 130 HOH HOH . D 4 HOH A 125 510 131 HOH HOH . D 4 HOH A 126 511 133 HOH HOH . D 4 HOH A 127 512 134 HOH HOH . D 4 HOH A 128 513 135 HOH HOH . D 4 HOH A 129 514 136 HOH HOH . D 4 HOH A 130 515 138 HOH HOH . D 4 HOH A 131 516 139 HOH HOH . D 4 HOH A 132 517 140 HOH HOH . D 4 HOH A 133 518 141 HOH HOH . D 4 HOH A 134 519 142 HOH HOH . D 4 HOH A 135 520 143 HOH HOH . D 4 HOH A 136 521 144 HOH HOH . D 4 HOH A 137 522 145 HOH HOH . D 4 HOH A 138 523 146 HOH HOH . D 4 HOH A 139 524 147 HOH HOH . D 4 HOH A 140 525 149 HOH HOH . D 4 HOH A 141 526 151 HOH HOH . D 4 HOH A 142 527 152 HOH HOH . D 4 HOH A 143 528 154 HOH HOH . D 4 HOH A 144 529 155 HOH HOH . D 4 HOH A 145 530 156 HOH HOH . D 4 HOH A 146 531 157 HOH HOH . D 4 HOH A 147 532 160 HOH HOH . D 4 HOH A 148 533 162 HOH HOH . D 4 HOH A 149 534 163 HOH HOH . D 4 HOH A 150 535 164 HOH HOH . D 4 HOH A 151 536 169 HOH HOH . D 4 HOH A 152 537 170 HOH HOH . D 4 HOH A 153 538 171 HOH HOH . D 4 HOH A 154 539 172 HOH HOH . D 4 HOH A 155 540 173 HOH HOH . D 4 HOH A 156 541 174 HOH HOH . D 4 HOH A 157 542 175 HOH HOH . D 4 HOH A 158 543 176 HOH HOH . D 4 HOH A 159 544 177 HOH HOH . D 4 HOH A 160 545 178 HOH HOH . D 4 HOH A 161 546 179 HOH HOH . D 4 HOH A 162 547 180 HOH HOH . D 4 HOH A 163 548 183 HOH HOH . D 4 HOH A 164 549 186 HOH HOH . D 4 HOH A 165 550 189 HOH HOH . D 4 HOH A 166 551 192 HOH HOH . D 4 HOH A 167 552 193 HOH HOH . D 4 HOH A 168 553 194 HOH HOH . D 4 HOH A 169 554 197 HOH HOH . D 4 HOH A 170 555 200 HOH HOH . D 4 HOH A 171 556 201 HOH HOH . D 4 HOH A 172 557 203 HOH HOH . D 4 HOH A 173 558 204 HOH HOH . D 4 HOH A 174 559 206 HOH HOH . D 4 HOH A 175 560 208 HOH HOH . D 4 HOH A 176 561 210 HOH HOH . D 4 HOH A 177 562 211 HOH HOH . D 4 HOH A 178 563 213 HOH HOH . D 4 HOH A 179 564 214 HOH HOH . D 4 HOH A 180 565 217 HOH HOH . D 4 HOH A 181 566 220 HOH HOH . D 4 HOH A 182 567 221 HOH HOH . D 4 HOH A 183 568 222 HOH HOH . D 4 HOH A 184 569 226 HOH HOH . D 4 HOH A 185 570 228 HOH HOH . D 4 HOH A 186 571 231 HOH HOH . D 4 HOH A 187 572 232 HOH HOH . D 4 HOH A 188 573 234 HOH HOH . D 4 HOH A 189 574 237 HOH HOH . D 4 HOH A 190 575 238 HOH HOH . D 4 HOH A 191 576 241 HOH HOH . D 4 HOH A 192 577 247 HOH HOH . D 4 HOH A 193 578 250 HOH HOH . D 4 HOH A 194 579 254 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 URC . . . B 2 -0.302 37.397 -6.593 1 23.71 ? N1 URC 7579 A 1 HETATM 2 C C2 URC . . . B 2 0.227 37.513 -7.841 1 22.47 ? C2 URC 7579 A 1 HETATM 3 C C6 URC . . . B 2 0.459 37.269 -5.483 1 23.72 ? C6 URC 7579 A 1 HETATM 4 N N3 URC . . . B 2 1.566 37.492 -8.077 1 21.65 ? N3 URC 7579 A 1 HETATM 5 O O11 URC . . . B 2 -0.559 37.633 -8.806 1 23.56 ? O11 URC 7579 A 1 HETATM 6 C C4 URC . . . B 2 2.421 37.355 -7.033 1 21.59 ? C4 URC 7579 A 1 HETATM 7 C C5 URC . . . B 2 1.928 37.24 -5.649 1 22.61 ? C5 URC 7579 A 1 HETATM 8 N N9 URC . . . B 2 3.773 37.311 -7.038 1 19.62 ? N9 URC 7579 A 1 HETATM 9 O O13 URC . . . B 2 -0.065 37.173 -4.355 1 26.96 ? O13 URC 7579 A 1 HETATM 10 N N7 URC . . . B 2 3.011 37.124 -4.85 1 23.4 ? N7 URC 7579 A 1 HETATM 11 C C8 URC . . . B 2 4.06 37.18 -5.719 1 25.21 ? C8 URC 7579 A 1 HETATM 12 O O24 URC . . . B 2 5.281 37.099 -5.31 1 25.66 ? O24 URC 7579 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 12 #