data_3RP8 # _model_server_result.job_id WFzoEE-Kx4k-S1tEq20iGQ _model_server_result.datetime_utc '2024-12-26 17:43:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rp8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":385}' # _entry.id 3RP8 # _exptl.entry_id 3RP8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3RP8 _cell.length_a 67.031 _cell.length_b 68.769 _cell.length_c 81.584 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RP8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 3RP8 _atom_sites.fract_transf_matrix[1][1] 0.014918 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014541 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012257 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 385 1 FAD FAD . C 3 CL A 1 386 1 CL CL . D 4 HOH A 1 387 1 HOH HOH . D 4 HOH A 2 388 2 HOH HOH . D 4 HOH A 3 389 3 HOH HOH . D 4 HOH A 4 390 4 HOH HOH . D 4 HOH A 5 391 5 HOH HOH . D 4 HOH A 6 392 6 HOH HOH . D 4 HOH A 7 393 7 HOH HOH . D 4 HOH A 8 394 8 HOH HOH . D 4 HOH A 9 395 9 HOH HOH . D 4 HOH A 10 396 10 HOH HOH . D 4 HOH A 11 397 11 HOH HOH . D 4 HOH A 12 398 12 HOH HOH . D 4 HOH A 13 399 13 HOH HOH . D 4 HOH A 14 400 14 HOH HOH . D 4 HOH A 15 401 15 HOH HOH . D 4 HOH A 16 402 16 HOH HOH . D 4 HOH A 17 403 17 HOH HOH . D 4 HOH A 18 404 18 HOH HOH . D 4 HOH A 19 405 19 HOH HOH . D 4 HOH A 20 406 20 HOH HOH . D 4 HOH A 21 407 21 HOH HOH . D 4 HOH A 22 408 22 HOH HOH . D 4 HOH A 23 409 23 HOH HOH . D 4 HOH A 24 410 24 HOH HOH . D 4 HOH A 25 411 25 HOH HOH . D 4 HOH A 26 412 26 HOH HOH . D 4 HOH A 27 413 27 HOH HOH . D 4 HOH A 28 414 28 HOH HOH . D 4 HOH A 29 415 29 HOH HOH . D 4 HOH A 30 416 30 HOH HOH . D 4 HOH A 31 417 31 HOH HOH . D 4 HOH A 32 418 32 HOH HOH . D 4 HOH A 33 419 33 HOH HOH . D 4 HOH A 34 420 34 HOH HOH . D 4 HOH A 35 421 35 HOH HOH . D 4 HOH A 36 422 36 HOH HOH . D 4 HOH A 37 423 37 HOH HOH . D 4 HOH A 38 424 38 HOH HOH . D 4 HOH A 39 425 39 HOH HOH . D 4 HOH A 40 426 40 HOH HOH . D 4 HOH A 41 427 41 HOH HOH . D 4 HOH A 42 428 42 HOH HOH . D 4 HOH A 43 429 43 HOH HOH . D 4 HOH A 44 430 44 HOH HOH . D 4 HOH A 45 431 45 HOH HOH . D 4 HOH A 46 432 46 HOH HOH . D 4 HOH A 47 433 47 HOH HOH . D 4 HOH A 48 434 48 HOH HOH . D 4 HOH A 49 435 49 HOH HOH . D 4 HOH A 50 436 50 HOH HOH . D 4 HOH A 51 437 51 HOH HOH . D 4 HOH A 52 438 52 HOH HOH . D 4 HOH A 53 439 53 HOH HOH . D 4 HOH A 54 440 54 HOH HOH . D 4 HOH A 55 441 55 HOH HOH . D 4 HOH A 56 442 56 HOH HOH . D 4 HOH A 57 443 57 HOH HOH . D 4 HOH A 58 444 58 HOH HOH . D 4 HOH A 59 445 59 HOH HOH . D 4 HOH A 60 446 60 HOH HOH . D 4 HOH A 61 447 61 HOH HOH . D 4 HOH A 62 448 62 HOH HOH . D 4 HOH A 63 449 63 HOH HOH . D 4 HOH A 64 450 64 HOH HOH . D 4 HOH A 65 451 65 HOH HOH . D 4 HOH A 66 452 66 HOH HOH . D 4 HOH A 67 453 67 HOH HOH . D 4 HOH A 68 454 68 HOH HOH . D 4 HOH A 69 455 69 HOH HOH . D 4 HOH A 70 456 70 HOH HOH . D 4 HOH A 71 457 71 HOH HOH . D 4 HOH A 72 458 72 HOH HOH . D 4 HOH A 73 459 73 HOH HOH . D 4 HOH A 74 460 74 HOH HOH . D 4 HOH A 75 461 75 HOH HOH . D 4 HOH A 76 462 76 HOH HOH . D 4 HOH A 77 463 77 HOH HOH . D 4 HOH A 78 464 78 HOH HOH . D 4 HOH A 79 465 79 HOH HOH . D 4 HOH A 80 466 80 HOH HOH . D 4 HOH A 81 467 81 HOH HOH . D 4 HOH A 82 468 82 HOH HOH . D 4 HOH A 83 469 83 HOH HOH . D 4 HOH A 84 470 84 HOH HOH . D 4 HOH A 85 471 85 HOH HOH . D 4 HOH A 86 472 86 HOH HOH . D 4 HOH A 87 473 87 HOH HOH . D 4 HOH A 88 474 88 HOH HOH . D 4 HOH A 89 475 89 HOH HOH . D 4 HOH A 90 476 90 HOH HOH . D 4 HOH A 91 477 91 HOH HOH . D 4 HOH A 92 478 92 HOH HOH . D 4 HOH A 93 479 93 HOH HOH . D 4 HOH A 94 480 94 HOH HOH . D 4 HOH A 95 481 95 HOH HOH . D 4 HOH A 96 482 96 HOH HOH . D 4 HOH A 97 483 97 HOH HOH . D 4 HOH A 98 484 98 HOH HOH . D 4 HOH A 99 485 99 HOH HOH . D 4 HOH A 100 486 100 HOH HOH . D 4 HOH A 101 487 101 HOH HOH . D 4 HOH A 102 488 102 HOH HOH . D 4 HOH A 103 489 103 HOH HOH . D 4 HOH A 104 490 104 HOH HOH . D 4 HOH A 105 491 105 HOH HOH . D 4 HOH A 106 492 106 HOH HOH . D 4 HOH A 107 493 107 HOH HOH . D 4 HOH A 108 494 108 HOH HOH . D 4 HOH A 109 495 109 HOH HOH . D 4 HOH A 110 496 110 HOH HOH . D 4 HOH A 111 497 111 HOH HOH . D 4 HOH A 112 498 112 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . B 2 6.78 24.963 2.286 1 23.35 ? PA FAD 385 A 1 HETATM 2 O O1A FAD . . . B 2 7.814 24.968 1.209 1 23.04 ? O1A FAD 385 A 1 HETATM 3 O O2A FAD . . . B 2 6.494 26.319 2.845 1 21.32 ? O2A FAD 385 A 1 HETATM 4 O O5B FAD . . . B 2 7.089 23.969 3.514 1 26.85 ? O5B FAD 385 A 1 HETATM 5 C C5B FAD . . . B 2 7.628 22.686 3.343 1 21.66 ? C5B FAD 385 A 1 HETATM 6 C C4B FAD . . . B 2 8.502 22.435 4.562 1 21.5 ? C4B FAD 385 A 1 HETATM 7 O O4B FAD . . . B 2 9.066 21.146 4.461 1 21.04 ? O4B FAD 385 A 1 HETATM 8 C C3B FAD . . . B 2 9.665 23.423 4.586 1 23.94 ? C3B FAD 385 A 1 HETATM 9 O O3B FAD . . . B 2 9.74 24.018 5.863 1 24.7 ? O3B FAD 385 A 1 HETATM 10 C C2B FAD . . . B 2 10.896 22.576 4.301 1 23.15 ? C2B FAD 385 A 1 HETATM 11 O O2B FAD . . . B 2 11.986 23 5.081 1 22.57 ? O2B FAD 385 A 1 HETATM 12 C C1B FAD . . . B 2 10.447 21.205 4.753 1 23.61 ? C1B FAD 385 A 1 HETATM 13 N N9A FAD . . . B 2 11.066 20.105 4.008 1 19.8 ? N9A FAD 385 A 1 HETATM 14 C C8A FAD . . . B 2 11.428 20.054 2.685 1 22.25 ? C8A FAD 385 A 1 HETATM 15 N N7A FAD . . . B 2 11.912 18.813 2.444 1 23.44 ? N7A FAD 385 A 1 HETATM 16 C C5A FAD . . . B 2 11.849 18.086 3.581 1 20.68 ? C5A FAD 385 A 1 HETATM 17 C C6A FAD . . . B 2 12.207 16.778 3.901 1 24.15 ? C6A FAD 385 A 1 HETATM 18 N N6A FAD . . . B 2 12.778 15.95 3.006 1 18.07 ? N6A FAD 385 A 1 HETATM 19 N N1A FAD . . . B 2 11.996 16.349 5.189 1 17.76 ? N1A FAD 385 A 1 HETATM 20 C C2A FAD . . . B 2 11.459 17.171 6.149 1 21.15 ? C2A FAD 385 A 1 HETATM 21 N N3A FAD . . . B 2 11.111 18.462 5.827 1 19.56 ? N3A FAD 385 A 1 HETATM 22 C C4A FAD . . . B 2 11.314 18.899 4.566 1 21.85 ? C4A FAD 385 A 1 HETATM 23 N N1 FAD . . . B 2 0.265 31.862 -1.508 1 19.2 ? N1 FAD 385 A 1 HETATM 24 C C2 FAD . . . B 2 -0.878 32.557 -1.183 1 20.15 ? C2 FAD 385 A 1 HETATM 25 O O2 FAD . . . B 2 -1.833 31.952 -0.677 1 24.08 ? O2 FAD 385 A 1 HETATM 26 N N3 FAD . . . B 2 -0.968 33.915 -1.444 1 20.76 ? N3 FAD 385 A 1 HETATM 27 C C4 FAD . . . B 2 0.105 34.575 -2.015 1 21.85 ? C4 FAD 385 A 1 HETATM 28 O O4 FAD . . . B 2 0.046 35.78 -2.247 1 21.36 ? O4 FAD 385 A 1 HETATM 29 C C4X FAD . . . B 2 1.254 33.872 -2.329 1 21.4 ? C4X FAD 385 A 1 HETATM 30 N N5 FAD . . . B 2 2.305 34.528 -2.912 1 19.93 ? N5 FAD 385 A 1 HETATM 31 C C5X FAD . . . B 2 3.448 33.839 -3.229 1 23.98 ? C5X FAD 385 A 1 HETATM 32 C C6 FAD . . . B 2 4.515 34.525 -3.806 1 24.29 ? C6 FAD 385 A 1 HETATM 33 C C7 FAD . . . B 2 5.669 33.819 -4.127 1 24.97 ? C7 FAD 385 A 1 HETATM 34 C C7M FAD . . . B 2 6.834 34.526 -4.757 1 23.44 ? C7M FAD 385 A 1 HETATM 35 C C8 FAD . . . B 2 5.751 32.45 -3.874 1 23.43 ? C8 FAD 385 A 1 HETATM 36 C C8M FAD . . . B 2 7.005 31.699 -4.221 1 21.67 ? C8M FAD 385 A 1 HETATM 37 C C9 FAD . . . B 2 4.691 31.773 -3.284 1 22.09 ? C9 FAD 385 A 1 HETATM 38 C C9A FAD . . . B 2 3.536 32.468 -2.962 1 22.44 ? C9A FAD 385 A 1 HETATM 39 N N10 FAD . . . B 2 2.478 31.804 -2.381 1 21.2 ? N10 FAD 385 A 1 HETATM 40 C C10 FAD . . . B 2 1.332 32.505 -2.078 1 19.9 ? C10 FAD 385 A 1 HETATM 41 C C1' FAD . . . B 2 2.555 30.317 -2.141 1 22.33 ? C1' FAD 385 A 1 HETATM 42 C C2' FAD . . . B 2 2.901 29.903 -0.714 1 21.06 ? C2' FAD 385 A 1 HETATM 43 O O2' FAD . . . B 2 4.085 30.546 -0.311 1 20.47 ? O2' FAD 385 A 1 HETATM 44 C C3' FAD . . . B 2 3.132 28.395 -0.704 1 20.04 ? C3' FAD 385 A 1 HETATM 45 O O3' FAD . . . B 2 2.174 27.733 -1.526 1 15.82 ? O3' FAD 385 A 1 HETATM 46 C C4' FAD . . . B 2 3.024 27.824 0.705 1 19.09 ? C4' FAD 385 A 1 HETATM 47 O O4' FAD . . . B 2 3.973 28.418 1.558 1 23.28 ? O4' FAD 385 A 1 HETATM 48 C C5' FAD . . . B 2 3.299 26.337 0.645 1 19.09 ? C5' FAD 385 A 1 HETATM 49 O O5' FAD . . . B 2 3.39 25.842 1.964 1 19.81 ? O5' FAD 385 A 1 HETATM 50 P P FAD . . . B 2 3.982 24.377 2.209 1 18.61 ? P FAD 385 A 1 HETATM 51 O O1P FAD . . . B 2 3.196 23.386 1.398 1 19.53 ? O1P FAD 385 A 1 HETATM 52 O O2P FAD . . . B 2 3.963 24.059 3.685 1 20.41 ? O2P FAD 385 A 1 HETATM 53 O O3P FAD . . . B 2 5.468 24.333 1.595 1 19.96 ? O3P FAD 385 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 418 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 53 #