data_3RPF # _model_server_result.job_id z6zvqSxUXeToXW1bkOxQDg _model_server_result.datetime_utc '2024-12-22 06:02:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rpf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":146}' # _entry.id 3RPF # _exptl.entry_id 3RPF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3RPF _cell.length_a 88.187 _cell.length_b 127.582 _cell.length_c 187.945 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RPF _symmetry.cell_setting ? _symmetry.Int_Tables_number 22 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,K,N 1 1,2 A,D,E,F,G,K,N 2 1 B,C,H,I,J,L,M 3 1,3 B,C,H,I,J,L,M 4 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_556 x,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 187.945 3 'crystal symmetry operation' 3_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 0 0 187.945 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 77 A LYS 74 1_555 A N MSE 78 A MSE 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C MSE 78 A MSE 75 1_555 A N ALA 79 A ALA 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 A C SER 96 A SER 93 1_555 A N MSE 97 A MSE 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale4 A C MSE 97 A MSE 94 1_555 A N GLY 98 A GLY 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 B C LYS 77 B LYS 74 1_555 B N MSE 78 B MSE 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 B C MSE 78 B MSE 75 1_555 B N ALA 79 B ALA 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale7 B C SER 96 B SER 93 1_555 B N MSE 97 B MSE 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 B C MSE 97 B MSE 94 1_555 B N GLY 98 B GLY 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale9 C C MSE 1 C MSE 1 1_555 C N MSE 2 C MSE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale10 C C MSE 2 C MSE 2 1_555 C N VAL 3 C VAL 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 299 n n S O2 SO4 doub 300 n n S O3 SO4 sing 301 n n S O4 SO4 sing 302 n n # _atom_sites.entry_id 3RPF _atom_sites.fract_transf_matrix[1][1] 0.01134 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007838 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005321 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 SO4 A 1 146 146 SO4 SO4 . F 4 EDO A 1 147 147 EDO EDO . G 4 EDO A 1 148 148 EDO EDO . H 3 SO4 B 1 146 146 SO4 SO4 . I 4 EDO B 1 147 147 EDO EDO . J 4 EDO B 1 148 148 EDO EDO . K 5 HOH A 1 149 149 HOH HOH . K 5 HOH A 2 150 150 HOH HOH . K 5 HOH A 3 151 151 HOH HOH . K 5 HOH A 4 152 152 HOH HOH . K 5 HOH A 5 153 153 HOH HOH . K 5 HOH A 6 154 154 HOH HOH . K 5 HOH A 7 155 155 HOH HOH . K 5 HOH A 8 156 156 HOH HOH . K 5 HOH A 9 157 157 HOH HOH . K 5 HOH A 10 158 158 HOH HOH . K 5 HOH A 11 159 159 HOH HOH . K 5 HOH A 12 160 160 HOH HOH . K 5 HOH A 13 161 161 HOH HOH . K 5 HOH A 14 162 162 HOH HOH . K 5 HOH A 15 163 163 HOH HOH . K 5 HOH A 16 164 164 HOH HOH . K 5 HOH A 17 165 165 HOH HOH . K 5 HOH A 18 166 166 HOH HOH . K 5 HOH A 19 167 167 HOH HOH . K 5 HOH A 20 168 168 HOH HOH . K 5 HOH A 21 169 169 HOH HOH . K 5 HOH A 22 170 170 HOH HOH . K 5 HOH A 23 171 171 HOH HOH . K 5 HOH A 24 172 172 HOH HOH . K 5 HOH A 25 173 173 HOH HOH . K 5 HOH A 26 174 174 HOH HOH . K 5 HOH A 27 175 175 HOH HOH . K 5 HOH A 28 176 176 HOH HOH . K 5 HOH A 29 177 177 HOH HOH . K 5 HOH A 30 178 178 HOH HOH . K 5 HOH A 31 179 179 HOH HOH . K 5 HOH A 32 180 180 HOH HOH . K 5 HOH A 33 181 181 HOH HOH . K 5 HOH A 34 182 182 HOH HOH . K 5 HOH A 35 183 183 HOH HOH . K 5 HOH A 36 184 184 HOH HOH . K 5 HOH A 37 185 185 HOH HOH . K 5 HOH A 38 186 186 HOH HOH . K 5 HOH A 39 187 187 HOH HOH . K 5 HOH A 40 188 188 HOH HOH . K 5 HOH A 41 189 189 HOH HOH . K 5 HOH A 42 190 190 HOH HOH . K 5 HOH A 43 191 191 HOH HOH . K 5 HOH A 44 192 192 HOH HOH . K 5 HOH A 45 193 193 HOH HOH . K 5 HOH A 46 194 194 HOH HOH . K 5 HOH A 47 195 195 HOH HOH . K 5 HOH A 48 196 196 HOH HOH . K 5 HOH A 49 197 197 HOH HOH . K 5 HOH A 50 198 198 HOH HOH . K 5 HOH A 51 199 199 HOH HOH . K 5 HOH A 52 200 200 HOH HOH . K 5 HOH A 53 201 201 HOH HOH . K 5 HOH A 54 202 202 HOH HOH . L 5 HOH B 1 149 149 HOH HOH . L 5 HOH B 2 150 150 HOH HOH . L 5 HOH B 3 151 151 HOH HOH . L 5 HOH B 4 152 152 HOH HOH . L 5 HOH B 5 153 153 HOH HOH . L 5 HOH B 6 154 154 HOH HOH . L 5 HOH B 7 155 155 HOH HOH . L 5 HOH B 8 156 156 HOH HOH . L 5 HOH B 9 157 157 HOH HOH . L 5 HOH B 10 158 158 HOH HOH . L 5 HOH B 11 159 159 HOH HOH . L 5 HOH B 12 160 160 HOH HOH . L 5 HOH B 13 161 161 HOH HOH . L 5 HOH B 14 162 162 HOH HOH . L 5 HOH B 15 163 163 HOH HOH . L 5 HOH B 16 164 164 HOH HOH . L 5 HOH B 17 165 165 HOH HOH . L 5 HOH B 18 166 166 HOH HOH . L 5 HOH B 19 167 167 HOH HOH . L 5 HOH B 20 168 168 HOH HOH . L 5 HOH B 21 169 169 HOH HOH . L 5 HOH B 22 170 170 HOH HOH . L 5 HOH B 23 171 171 HOH HOH . L 5 HOH B 24 172 172 HOH HOH . L 5 HOH B 25 173 173 HOH HOH . L 5 HOH B 26 174 174 HOH HOH . L 5 HOH B 27 175 175 HOH HOH . L 5 HOH B 28 176 176 HOH HOH . L 5 HOH B 29 177 177 HOH HOH . L 5 HOH B 30 178 178 HOH HOH . L 5 HOH B 31 179 179 HOH HOH . L 5 HOH B 32 180 180 HOH HOH . L 5 HOH B 33 181 181 HOH HOH . L 5 HOH B 34 182 182 HOH HOH . L 5 HOH B 35 183 183 HOH HOH . L 5 HOH B 36 184 184 HOH HOH . L 5 HOH B 37 185 185 HOH HOH . L 5 HOH B 38 186 186 HOH HOH . L 5 HOH B 39 187 187 HOH HOH . L 5 HOH B 40 188 188 HOH HOH . L 5 HOH B 41 189 189 HOH HOH . L 5 HOH B 42 190 190 HOH HOH . L 5 HOH B 43 191 191 HOH HOH . L 5 HOH B 44 192 192 HOH HOH . L 5 HOH B 45 193 193 HOH HOH . L 5 HOH B 46 194 194 HOH HOH . L 5 HOH B 47 195 195 HOH HOH . L 5 HOH B 48 196 196 HOH HOH . L 5 HOH B 49 197 197 HOH HOH . L 5 HOH B 50 198 198 HOH HOH . L 5 HOH B 51 199 199 HOH HOH . M 5 HOH C 1 75 75 HOH HOH . M 5 HOH C 2 76 76 HOH HOH . M 5 HOH C 3 77 77 HOH HOH . M 5 HOH C 4 78 78 HOH HOH . M 5 HOH C 5 79 79 HOH HOH . M 5 HOH C 6 80 80 HOH HOH . M 5 HOH C 7 97 97 HOH HOH . M 5 HOH C 8 115 115 HOH HOH . M 5 HOH C 9 116 116 HOH HOH . M 5 HOH C 10 119 119 HOH HOH . M 5 HOH C 11 120 120 HOH HOH . N 5 HOH D 1 75 75 HOH HOH . N 5 HOH D 2 76 76 HOH HOH . N 5 HOH D 3 78 78 HOH HOH . N 5 HOH D 4 101 101 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . E 3 23.971 -9.589 104.28 0.81 52.61 ? S SO4 146 A 1 HETATM 2 O O1 SO4 . . . E 3 24.991 -10.364 103.579 0.81 53.1 ? O1 SO4 146 A 1 HETATM 3 O O2 SO4 . . . E 3 22.717 -9.608 103.53 0.81 50.28 ? O2 SO4 146 A 1 HETATM 4 O O3 SO4 . . . E 3 23.769 -10.189 105.594 0.81 54.9 ? O3 SO4 146 A 1 HETATM 5 O O4 SO4 . . . E 3 24.395 -8.199 104.431 0.81 48.24 ? O4 SO4 146 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 5 #