data_3RPF
#
_model_server_result.job_id            F7OrSiHEcgtpUx-YQdyrdw 
_model_server_result.datetime_utc      '2024-12-22 06:29:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3rpf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":148}' 
#
_entry.id    3RPF 
#
_exptl.entry_id    3RPF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3RPF 
_cell.length_a            88.187 
_cell.length_b            127.582 
_cell.length_c            187.945 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3RPF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        22 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'F 2 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA tetrameric 4 software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,K,N 1 1,2 
A,D,E,F,G,K,N 2 1 
B,C,H,I,J,L,M 3 1,3 
B,C,H,I,J,L,M 4 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_556 x,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 187.945 
3 'crystal symmetry operation' 3_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 0 0 187.945 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 G N N 
? 4 I N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C LYS 77 A LYS 74 1_555 A N MSE 78 A MSE 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale2 A C MSE 78 A MSE 75 1_555 A N ALA 79 A ALA 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale3 A C SER 96 A SER 93 1_555 A N MSE 97 A MSE 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale4 A C MSE 97 A MSE 94 1_555 A N GLY 98 A GLY 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale5 B C LYS 77 B LYS 74 1_555 B N MSE 78 B MSE 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale6 B C MSE 78 B MSE 75 1_555 B N ALA 79 B ALA 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale7 B C SER 96 B SER 93 1_555 B N MSE 97 B MSE 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale8 B C MSE 97 B MSE 94 1_555 B N GLY 98 B GLY 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale9 C C MSE 1 C MSE 1 1_555 C N MSE 2 C MSE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale10 C C MSE 2 C MSE 2 1_555 C N VAL 3 C VAL 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     3RPF 
_atom_sites.fract_transf_matrix[1][1]    0.01134 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007838 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005321 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 SO4 A 1 146 146 SO4 SO4 . 
F 4 EDO A 1 147 147 EDO EDO . 
G 4 EDO A 1 148 148 EDO EDO . 
H 3 SO4 B 1 146 146 SO4 SO4 . 
I 4 EDO B 1 147 147 EDO EDO . 
J 4 EDO B 1 148 148 EDO EDO . 
K 5 HOH A 1 149 149 HOH HOH . 
K 5 HOH A 2 150 150 HOH HOH . 
K 5 HOH A 3 151 151 HOH HOH . 
K 5 HOH A 4 152 152 HOH HOH . 
K 5 HOH A 5 153 153 HOH HOH . 
K 5 HOH A 6 154 154 HOH HOH . 
K 5 HOH A 7 155 155 HOH HOH . 
K 5 HOH A 8 156 156 HOH HOH . 
K 5 HOH A 9 157 157 HOH HOH . 
K 5 HOH A 10 158 158 HOH HOH . 
K 5 HOH A 11 159 159 HOH HOH . 
K 5 HOH A 12 160 160 HOH HOH . 
K 5 HOH A 13 161 161 HOH HOH . 
K 5 HOH A 14 162 162 HOH HOH . 
K 5 HOH A 15 163 163 HOH HOH . 
K 5 HOH A 16 164 164 HOH HOH . 
K 5 HOH A 17 165 165 HOH HOH . 
K 5 HOH A 18 166 166 HOH HOH . 
K 5 HOH A 19 167 167 HOH HOH . 
K 5 HOH A 20 168 168 HOH HOH . 
K 5 HOH A 21 169 169 HOH HOH . 
K 5 HOH A 22 170 170 HOH HOH . 
K 5 HOH A 23 171 171 HOH HOH . 
K 5 HOH A 24 172 172 HOH HOH . 
K 5 HOH A 25 173 173 HOH HOH . 
K 5 HOH A 26 174 174 HOH HOH . 
K 5 HOH A 27 175 175 HOH HOH . 
K 5 HOH A 28 176 176 HOH HOH . 
K 5 HOH A 29 177 177 HOH HOH . 
K 5 HOH A 30 178 178 HOH HOH . 
K 5 HOH A 31 179 179 HOH HOH . 
K 5 HOH A 32 180 180 HOH HOH . 
K 5 HOH A 33 181 181 HOH HOH . 
K 5 HOH A 34 182 182 HOH HOH . 
K 5 HOH A 35 183 183 HOH HOH . 
K 5 HOH A 36 184 184 HOH HOH . 
K 5 HOH A 37 185 185 HOH HOH . 
K 5 HOH A 38 186 186 HOH HOH . 
K 5 HOH A 39 187 187 HOH HOH . 
K 5 HOH A 40 188 188 HOH HOH . 
K 5 HOH A 41 189 189 HOH HOH . 
K 5 HOH A 42 190 190 HOH HOH . 
K 5 HOH A 43 191 191 HOH HOH . 
K 5 HOH A 44 192 192 HOH HOH . 
K 5 HOH A 45 193 193 HOH HOH . 
K 5 HOH A 46 194 194 HOH HOH . 
K 5 HOH A 47 195 195 HOH HOH . 
K 5 HOH A 48 196 196 HOH HOH . 
K 5 HOH A 49 197 197 HOH HOH . 
K 5 HOH A 50 198 198 HOH HOH . 
K 5 HOH A 51 199 199 HOH HOH . 
K 5 HOH A 52 200 200 HOH HOH . 
K 5 HOH A 53 201 201 HOH HOH . 
K 5 HOH A 54 202 202 HOH HOH . 
L 5 HOH B 1 149 149 HOH HOH . 
L 5 HOH B 2 150 150 HOH HOH . 
L 5 HOH B 3 151 151 HOH HOH . 
L 5 HOH B 4 152 152 HOH HOH . 
L 5 HOH B 5 153 153 HOH HOH . 
L 5 HOH B 6 154 154 HOH HOH . 
L 5 HOH B 7 155 155 HOH HOH . 
L 5 HOH B 8 156 156 HOH HOH . 
L 5 HOH B 9 157 157 HOH HOH . 
L 5 HOH B 10 158 158 HOH HOH . 
L 5 HOH B 11 159 159 HOH HOH . 
L 5 HOH B 12 160 160 HOH HOH . 
L 5 HOH B 13 161 161 HOH HOH . 
L 5 HOH B 14 162 162 HOH HOH . 
L 5 HOH B 15 163 163 HOH HOH . 
L 5 HOH B 16 164 164 HOH HOH . 
L 5 HOH B 17 165 165 HOH HOH . 
L 5 HOH B 18 166 166 HOH HOH . 
L 5 HOH B 19 167 167 HOH HOH . 
L 5 HOH B 20 168 168 HOH HOH . 
L 5 HOH B 21 169 169 HOH HOH . 
L 5 HOH B 22 170 170 HOH HOH . 
L 5 HOH B 23 171 171 HOH HOH . 
L 5 HOH B 24 172 172 HOH HOH . 
L 5 HOH B 25 173 173 HOH HOH . 
L 5 HOH B 26 174 174 HOH HOH . 
L 5 HOH B 27 175 175 HOH HOH . 
L 5 HOH B 28 176 176 HOH HOH . 
L 5 HOH B 29 177 177 HOH HOH . 
L 5 HOH B 30 178 178 HOH HOH . 
L 5 HOH B 31 179 179 HOH HOH . 
L 5 HOH B 32 180 180 HOH HOH . 
L 5 HOH B 33 181 181 HOH HOH . 
L 5 HOH B 34 182 182 HOH HOH . 
L 5 HOH B 35 183 183 HOH HOH . 
L 5 HOH B 36 184 184 HOH HOH . 
L 5 HOH B 37 185 185 HOH HOH . 
L 5 HOH B 38 186 186 HOH HOH . 
L 5 HOH B 39 187 187 HOH HOH . 
L 5 HOH B 40 188 188 HOH HOH . 
L 5 HOH B 41 189 189 HOH HOH . 
L 5 HOH B 42 190 190 HOH HOH . 
L 5 HOH B 43 191 191 HOH HOH . 
L 5 HOH B 44 192 192 HOH HOH . 
L 5 HOH B 45 193 193 HOH HOH . 
L 5 HOH B 46 194 194 HOH HOH . 
L 5 HOH B 47 195 195 HOH HOH . 
L 5 HOH B 48 196 196 HOH HOH . 
L 5 HOH B 49 197 197 HOH HOH . 
L 5 HOH B 50 198 198 HOH HOH . 
L 5 HOH B 51 199 199 HOH HOH . 
M 5 HOH C 1 75 75 HOH HOH . 
M 5 HOH C 2 76 76 HOH HOH . 
M 5 HOH C 3 77 77 HOH HOH . 
M 5 HOH C 4 78 78 HOH HOH . 
M 5 HOH C 5 79 79 HOH HOH . 
M 5 HOH C 6 80 80 HOH HOH . 
M 5 HOH C 7 97 97 HOH HOH . 
M 5 HOH C 8 115 115 HOH HOH . 
M 5 HOH C 9 116 116 HOH HOH . 
M 5 HOH C 10 119 119 HOH HOH . 
M 5 HOH C 11 120 120 HOH HOH . 
N 5 HOH D 1 75 75 HOH HOH . 
N 5 HOH D 2 76 76 HOH HOH . 
N 5 HOH D 3 78 78 HOH HOH . 
N 5 HOH D 4 101 101 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . J 4 -7.314 36.272 65.872 1 45.16 ? C1 EDO 148 B 1 
HETATM 2 O O1 EDO . . . J 4 -6.283 37.243 66.119 1 48.34 ? O1 EDO 148 B 1 
HETATM 3 C C2 EDO . . . J 4 -7.891 36.488 64.472 1 41.79 ? C2 EDO 148 B 1 
HETATM 4 O O2 EDO . . . J 4 -8.43 35.253 63.974 1 42.05 ? O2 EDO 148 B 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    32 
_model_server_stats.query_time_ms           882 
_model_server_stats.encode_time_ms          21 
_model_server_stats.element_count           4 
#