data_3RPG # _model_server_result.job_id hG-awgtqTu7YyVU7S4ljog _model_server_result.datetime_utc '2024-11-15 13:52:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rpg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1115}' # _entry.id 3RPG # _exptl.entry_id 3RPG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3RPG _cell.length_a 107.89 _cell.length_b 107.89 _cell.length_c 77.572 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RPG _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,H 2 1 B,C,D,E,F,G,I,J 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B SG CYS 18 B CYS 18 1_555 D ZN ZN . B ZN 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? metalc ? metalc2 B SG CYS 21 B CYS 21 1_555 D ZN ZN . B ZN 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? metalc ? metalc3 B SG CYS 34 B CYS 34 1_555 E ZN ZN . B ZN 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc4 B ND1 HIS 36 B HIS 36 1_555 E ZN ZN . B ZN 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc5 B SG CYS 39 B CYS 39 1_555 D ZN ZN . B ZN 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc6 B SG CYS 42 B CYS 42 1_555 D ZN ZN . B ZN 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? metalc ? metalc7 B SG CYS 53 B CYS 53 1_555 E ZN ZN . B ZN 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc8 B SG CYS 56 B CYS 56 1_555 E ZN ZN . B ZN 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? metalc ? metalc9 C SG CYS 56 C CYS 51 1_555 G ZN ZN . C ZN 1116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? metalc ? metalc10 C SG CYS 59 C CYS 54 1_555 G ZN ZN . C ZN 1116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? metalc ? metalc11 C SG CYS 72 C CYS 67 1_555 F ZN ZN . C ZN 1115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc12 C ND1 HIS 74 C HIS 69 1_555 F ZN ZN . C ZN 1115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc13 C SG CYS 77 C CYS 72 1_555 G ZN ZN . C ZN 1116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? metalc ? metalc14 C SG CYS 80 C CYS 75 1_555 G ZN ZN . C ZN 1116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc15 C SG CYS 92 C CYS 87 1_555 F ZN ZN . C ZN 1115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc16 C SG CYS 95 C CYS 90 1_555 F ZN ZN . C ZN 1115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3RPG _atom_sites.fract_transf_matrix[1][1] 0.009269 _atom_sites.fract_transf_matrix[1][2] 0.005351 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010703 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012891 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN B 1 1104 1104 ZN ZN . E 4 ZN B 1 1105 1105 ZN ZN . F 4 ZN C 1 1115 1115 ZN ZN . G 4 ZN C 1 1116 1116 ZN ZN . H 5 HOH A 1 148 148 HOH HOH . H 5 HOH A 2 149 149 HOH HOH . H 5 HOH A 3 150 150 HOH HOH . H 5 HOH A 4 151 151 HOH HOH . H 5 HOH A 5 152 152 HOH HOH . H 5 HOH A 6 153 153 HOH HOH . H 5 HOH A 7 154 154 HOH HOH . H 5 HOH A 8 155 155 HOH HOH . H 5 HOH A 9 156 156 HOH HOH . H 5 HOH A 10 157 157 HOH HOH . H 5 HOH A 11 158 158 HOH HOH . H 5 HOH A 12 159 159 HOH HOH . H 5 HOH A 13 160 160 HOH HOH . H 5 HOH A 14 161 161 HOH HOH . H 5 HOH A 15 162 162 HOH HOH . H 5 HOH A 16 163 163 HOH HOH . H 5 HOH A 17 164 164 HOH HOH . H 5 HOH A 18 165 165 HOH HOH . H 5 HOH A 19 166 166 HOH HOH . H 5 HOH A 20 167 167 HOH HOH . H 5 HOH A 21 168 168 HOH HOH . H 5 HOH A 22 169 169 HOH HOH . H 5 HOH A 23 170 170 HOH HOH . H 5 HOH A 24 171 171 HOH HOH . H 5 HOH A 25 172 172 HOH HOH . H 5 HOH A 26 173 173 HOH HOH . H 5 HOH A 27 174 174 HOH HOH . H 5 HOH A 28 176 176 HOH HOH . H 5 HOH A 29 177 177 HOH HOH . H 5 HOH A 30 178 178 HOH HOH . H 5 HOH A 31 179 179 HOH HOH . H 5 HOH A 32 180 180 HOH HOH . H 5 HOH A 33 181 181 HOH HOH . H 5 HOH A 34 182 182 HOH HOH . H 5 HOH A 35 183 183 HOH HOH . H 5 HOH A 36 184 184 HOH HOH . H 5 HOH A 37 185 185 HOH HOH . H 5 HOH A 38 186 186 HOH HOH . H 5 HOH A 39 187 187 HOH HOH . H 5 HOH A 40 188 188 HOH HOH . H 5 HOH A 41 189 189 HOH HOH . H 5 HOH A 42 190 190 HOH HOH . H 5 HOH A 43 191 191 HOH HOH . H 5 HOH A 44 192 192 HOH HOH . H 5 HOH A 45 193 193 HOH HOH . H 5 HOH A 46 194 194 HOH HOH . H 5 HOH A 47 195 195 HOH HOH . H 5 HOH A 48 196 196 HOH HOH . H 5 HOH A 49 197 197 HOH HOH . H 5 HOH A 50 198 198 HOH HOH . H 5 HOH A 51 199 199 HOH HOH . H 5 HOH A 52 200 200 HOH HOH . H 5 HOH A 53 201 201 HOH HOH . I 5 HOH B 1 118 118 HOH HOH . I 5 HOH B 2 119 119 HOH HOH . I 5 HOH B 3 120 120 HOH HOH . I 5 HOH B 4 121 121 HOH HOH . I 5 HOH B 5 122 122 HOH HOH . I 5 HOH B 6 123 123 HOH HOH . I 5 HOH B 7 124 124 HOH HOH . I 5 HOH B 8 125 125 HOH HOH . I 5 HOH B 9 126 126 HOH HOH . I 5 HOH B 10 127 127 HOH HOH . I 5 HOH B 11 128 128 HOH HOH . I 5 HOH B 12 129 129 HOH HOH . I 5 HOH B 13 130 130 HOH HOH . I 5 HOH B 14 131 131 HOH HOH . I 5 HOH B 15 132 132 HOH HOH . I 5 HOH B 16 133 133 HOH HOH . I 5 HOH B 17 134 134 HOH HOH . I 5 HOH B 18 135 135 HOH HOH . I 5 HOH B 19 136 136 HOH HOH . I 5 HOH B 20 137 137 HOH HOH . I 5 HOH B 21 138 138 HOH HOH . I 5 HOH B 22 139 139 HOH HOH . I 5 HOH B 23 140 140 HOH HOH . I 5 HOH B 24 141 141 HOH HOH . I 5 HOH B 25 142 142 HOH HOH . I 5 HOH B 26 143 143 HOH HOH . I 5 HOH B 27 144 144 HOH HOH . I 5 HOH B 28 145 145 HOH HOH . J 5 HOH C 1 117 117 HOH HOH . J 5 HOH C 2 118 118 HOH HOH . J 5 HOH C 3 119 119 HOH HOH . J 5 HOH C 4 120 120 HOH HOH . J 5 HOH C 5 121 121 HOH HOH . J 5 HOH C 6 122 122 HOH HOH . J 5 HOH C 7 123 123 HOH HOH . J 5 HOH C 8 124 124 HOH HOH . J 5 HOH C 9 125 125 HOH HOH . J 5 HOH C 10 126 126 HOH HOH . J 5 HOH C 11 127 127 HOH HOH . J 5 HOH C 12 128 128 HOH HOH . J 5 HOH C 13 129 129 HOH HOH . J 5 HOH C 14 130 130 HOH HOH . J 5 HOH C 15 131 131 HOH HOH . J 5 HOH C 16 132 132 HOH HOH . J 5 HOH C 17 133 133 HOH HOH . J 5 HOH C 18 134 134 HOH HOH . J 5 HOH C 19 135 135 HOH HOH . J 5 HOH C 20 136 136 HOH HOH . J 5 HOH C 21 137 137 HOH HOH . J 5 HOH C 22 138 138 HOH HOH . J 5 HOH C 23 139 139 HOH HOH . J 5 HOH C 24 140 140 HOH HOH . J 5 HOH C 25 141 141 HOH HOH . J 5 HOH C 26 142 142 HOH HOH . J 5 HOH C 27 143 143 HOH HOH . J 5 HOH C 28 144 144 HOH HOH . J 5 HOH C 29 145 145 HOH HOH . J 5 HOH C 30 146 146 HOH HOH . J 5 HOH C 31 147 147 HOH HOH . J 5 HOH C 32 148 148 HOH HOH . J 5 HOH C 33 149 149 HOH HOH . J 5 HOH C 34 150 150 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 4 _atom_site.Cartn_x 39.633 _atom_site.Cartn_y -7.532 _atom_site.Cartn_z -3.327 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 34.31 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1115 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #