data_3RPI # _model_server_result.job_id 3ze0hOD2XJxjpyN-iyi7JA _model_server_result.datetime_utc '2024-11-08 14:39:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rpi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1000}' # _entry.id 3RPI # _exptl.entry_id 3RPI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.4 _cell.angle_gamma 90 _cell.entry_id 3RPI _cell.length_a 63.62 _cell.length_b 155.68 _cell.length_c 74.76 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RPI _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H 1 1 C,D,F,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 84 L CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf2 A SG CYS 126 L CYS 123 1_555 A SG CYS 186 L CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 100 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf4 B SG CYS 150 H CYS 146 1_555 B SG CYS 206 H CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf5 C SG CYS 22 A CYS 22 1_555 C SG CYS 100 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf6 C SG CYS 150 A CYS 146 1_555 C SG CYS 206 A CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf7 D SG CYS 23 B CYS 23 1_555 D SG CYS 84 B CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf8 D SG CYS 126 B CYS 123 1_555 D SG CYS 186 B CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A ND2 ASN 68 L ASN 70 1_555 E C1 NAG . L NAG 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale2 D ND2 ASN 68 B ASN 70 1_555 F C1 NAG . B NAG 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms ? # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3RPI _atom_sites.fract_transf_matrix[1][1] 0.015718 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005846 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006423 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014271 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAG L 1 1000 1000 NAG NAG . F 3 NAG B 1 1000 1000 NAG NAG . G 4 HOH L 1 28 28 HOH HOH . G 4 HOH L 2 30 30 HOH HOH . G 4 HOH L 3 204 2 HOH HOH . G 4 HOH L 4 205 4 HOH HOH . G 4 HOH L 5 206 6 HOH HOH . G 4 HOH L 6 207 10 HOH HOH . G 4 HOH L 7 208 15 HOH HOH . G 4 HOH L 8 209 16 HOH HOH . G 4 HOH L 9 210 17 HOH HOH . G 4 HOH L 10 211 21 HOH HOH . G 4 HOH L 11 212 22 HOH HOH . G 4 HOH L 12 213 25 HOH HOH . G 4 HOH L 13 214 31 HOH HOH . G 4 HOH L 14 215 35 HOH HOH . G 4 HOH L 15 216 39 HOH HOH . G 4 HOH L 16 217 41 HOH HOH . G 4 HOH L 17 218 42 HOH HOH . G 4 HOH L 18 219 51 HOH HOH . G 4 HOH L 19 220 52 HOH HOH . G 4 HOH L 20 221 56 HOH HOH . G 4 HOH L 21 222 58 HOH HOH . G 4 HOH L 22 223 59 HOH HOH . G 4 HOH L 23 224 67 HOH HOH . G 4 HOH L 24 225 68 HOH HOH . G 4 HOH L 25 226 69 HOH HOH . G 4 HOH L 26 227 74 HOH HOH . G 4 HOH L 27 228 76 HOH HOH . G 4 HOH L 28 229 79 HOH HOH . G 4 HOH L 29 230 85 HOH HOH . G 4 HOH L 30 231 88 HOH HOH . G 4 HOH L 31 232 92 HOH HOH . G 4 HOH L 32 233 93 HOH HOH . G 4 HOH L 33 234 94 HOH HOH . G 4 HOH L 34 235 95 HOH HOH . G 4 HOH L 35 236 96 HOH HOH . G 4 HOH L 36 237 101 HOH HOH . G 4 HOH L 37 238 105 HOH HOH . G 4 HOH L 38 239 106 HOH HOH . G 4 HOH L 39 240 110 HOH HOH . G 4 HOH L 40 241 116 HOH HOH . G 4 HOH L 41 242 117 HOH HOH . G 4 HOH L 42 243 125 HOH HOH . G 4 HOH L 43 244 128 HOH HOH . G 4 HOH L 44 245 132 HOH HOH . G 4 HOH L 45 246 133 HOH HOH . G 4 HOH L 46 247 135 HOH HOH . G 4 HOH L 47 248 140 HOH HOH . G 4 HOH L 48 249 146 HOH HOH . H 4 HOH H 1 226 12 HOH HOH . H 4 HOH H 2 227 14 HOH HOH . H 4 HOH H 3 228 20 HOH HOH . H 4 HOH H 4 229 23 HOH HOH . H 4 HOH H 5 230 26 HOH HOH . H 4 HOH H 6 231 33 HOH HOH . H 4 HOH H 7 232 36 HOH HOH . H 4 HOH H 8 233 44 HOH HOH . H 4 HOH H 9 234 53 HOH HOH . H 4 HOH H 10 235 55 HOH HOH . H 4 HOH H 11 236 70 HOH HOH . H 4 HOH H 12 237 73 HOH HOH . H 4 HOH H 13 238 78 HOH HOH . H 4 HOH H 14 239 84 HOH HOH . H 4 HOH H 15 240 87 HOH HOH . H 4 HOH H 16 241 99 HOH HOH . H 4 HOH H 17 242 102 HOH HOH . H 4 HOH H 18 243 118 HOH HOH . H 4 HOH H 19 244 119 HOH HOH . H 4 HOH H 20 245 123 HOH HOH . H 4 HOH H 21 246 126 HOH HOH . H 4 HOH H 22 247 134 HOH HOH . H 4 HOH H 23 248 137 HOH HOH . H 4 HOH H 24 249 139 HOH HOH . H 4 HOH H 25 250 145 HOH HOH . I 4 HOH A 1 226 5 HOH HOH . I 4 HOH A 2 227 7 HOH HOH . I 4 HOH A 3 228 18 HOH HOH . I 4 HOH A 4 229 19 HOH HOH . I 4 HOH A 5 230 32 HOH HOH . I 4 HOH A 6 231 37 HOH HOH . I 4 HOH A 7 232 43 HOH HOH . I 4 HOH A 8 233 46 HOH HOH . I 4 HOH A 9 234 54 HOH HOH . I 4 HOH A 10 235 57 HOH HOH . I 4 HOH A 11 236 61 HOH HOH . I 4 HOH A 12 237 65 HOH HOH . I 4 HOH A 13 238 81 HOH HOH . I 4 HOH A 14 239 82 HOH HOH . I 4 HOH A 15 240 86 HOH HOH . I 4 HOH A 16 241 89 HOH HOH . I 4 HOH A 17 242 91 HOH HOH . I 4 HOH A 18 243 98 HOH HOH . I 4 HOH A 19 244 103 HOH HOH . I 4 HOH A 20 245 107 HOH HOH . I 4 HOH A 21 246 108 HOH HOH . I 4 HOH A 22 247 111 HOH HOH . I 4 HOH A 23 248 112 HOH HOH . I 4 HOH A 24 249 115 HOH HOH . I 4 HOH A 25 250 121 HOH HOH . I 4 HOH A 26 251 122 HOH HOH . I 4 HOH A 27 252 127 HOH HOH . I 4 HOH A 28 253 130 HOH HOH . I 4 HOH A 29 254 131 HOH HOH . I 4 HOH A 30 255 136 HOH HOH . I 4 HOH A 31 256 143 HOH HOH . J 4 HOH B 1 27 27 HOH HOH . J 4 HOH B 2 29 29 HOH HOH . J 4 HOH B 3 204 1 HOH HOH . J 4 HOH B 4 205 3 HOH HOH . J 4 HOH B 5 206 8 HOH HOH . J 4 HOH B 6 207 9 HOH HOH . J 4 HOH B 7 208 11 HOH HOH . J 4 HOH B 8 209 13 HOH HOH . J 4 HOH B 9 210 24 HOH HOH . J 4 HOH B 10 211 34 HOH HOH . J 4 HOH B 11 212 38 HOH HOH . J 4 HOH B 12 213 40 HOH HOH . J 4 HOH B 13 214 45 HOH HOH . J 4 HOH B 14 215 47 HOH HOH . J 4 HOH B 15 216 48 HOH HOH . J 4 HOH B 16 217 49 HOH HOH . J 4 HOH B 17 218 50 HOH HOH . J 4 HOH B 18 219 60 HOH HOH . J 4 HOH B 19 220 62 HOH HOH . J 4 HOH B 20 221 63 HOH HOH . J 4 HOH B 21 222 64 HOH HOH . J 4 HOH B 22 223 66 HOH HOH . J 4 HOH B 23 224 71 HOH HOH . J 4 HOH B 24 225 72 HOH HOH . J 4 HOH B 25 226 75 HOH HOH . J 4 HOH B 26 227 77 HOH HOH . J 4 HOH B 27 228 80 HOH HOH . J 4 HOH B 28 229 83 HOH HOH . J 4 HOH B 29 230 90 HOH HOH . J 4 HOH B 30 231 97 HOH HOH . J 4 HOH B 31 232 100 HOH HOH . J 4 HOH B 32 233 104 HOH HOH . J 4 HOH B 33 234 109 HOH HOH . J 4 HOH B 34 235 113 HOH HOH . J 4 HOH B 35 236 114 HOH HOH . J 4 HOH B 36 237 120 HOH HOH . J 4 HOH B 37 238 124 HOH HOH . J 4 HOH B 38 239 129 HOH HOH . J 4 HOH B 39 240 138 HOH HOH . J 4 HOH B 40 241 141 HOH HOH . J 4 HOH B 41 242 142 HOH HOH . J 4 HOH B 42 243 144 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . F 3 -38.95 -34.432 -20.993 1 38.44 ? C1 NAG 1000 B 1 HETATM 2 C C2 NAG . . . F 3 -39.351 -35.778 -21.719 1 55.02 ? C2 NAG 1000 B 1 HETATM 3 C C3 NAG . . . F 3 -40.755 -35.595 -22.397 1 55.17 ? C3 NAG 1000 B 1 HETATM 4 C C4 NAG . . . F 3 -41.738 -35.088 -21.336 1 71.28 ? C4 NAG 1000 B 1 HETATM 5 C C5 NAG . . . F 3 -41.18 -33.792 -20.715 1 64.91 ? C5 NAG 1000 B 1 HETATM 6 C C6 NAG . . . F 3 -42.083 -33.368 -19.539 1 66.66 ? C6 NAG 1000 B 1 HETATM 7 C C7 NAG . . . F 3 -37.458 -37.26 -22.449 1 44.7 ? C7 NAG 1000 B 1 HETATM 8 C C8 NAG . . . F 3 -36.392 -37.466 -23.46 1 38.79 ? C8 NAG 1000 B 1 HETATM 9 N N2 NAG . . . F 3 -38.275 -36.099 -22.681 1 42.93 ? N2 NAG 1000 B 1 HETATM 10 O O3 NAG . . . F 3 -41.176 -36.863 -22.785 1 53.63 ? O3 NAG 1000 B 1 HETATM 11 O O4 NAG . . . F 3 -42.979 -34.904 -21.97 1 70.56 ? O4 NAG 1000 B 1 HETATM 12 O O5 NAG . . . F 3 -39.987 -34.097 -20.116 1 57.34 ? O5 NAG 1000 B 1 HETATM 13 O O6 NAG . . . F 3 -42.184 -34.542 -18.726 1 61.14 ? O6 NAG 1000 B 1 HETATM 14 O O7 NAG . . . F 3 -37.621 -38.02 -21.495 1 73.12 ? O7 NAG 1000 B 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 14 #