data_3RPO # _model_server_result.job_id ArcMufIGDhoJpmMcIotw8w _model_server_result.datetime_utc '2024-11-05 03:59:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rpo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":778}' # _entry.id 3RPO # _exptl.entry_id 3RPO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 373.363 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-({4-carbamoyl-2-nitro-5-[(pyridin-3-ylmethyl)amino]phenyl}amino)butanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3RPO _cell.length_a 53.63 _cell.length_b 71.58 _cell.length_c 72.66 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RPO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H19 N5 O5' _chem_comp.formula_weight 373.363 _chem_comp.id 24Z _chem_comp.mon_nstd_flag . _chem_comp.name '4-({4-carbamoyl-2-nitro-5-[(pyridin-3-ylmethyl)amino]phenyl}amino)butanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N01 C08 24Z sing 1 n n N01 C13 24Z sing 2 n n N01 HN01 24Z sing 3 n n N02 C12 24Z sing 4 n n N02 H102 24Z sing 5 n n N02 H202 24Z sing 6 n n N03 C16 24Z doub 7 n y N04 C19 24Z sing 8 n n N04 HN04 24Z sing 9 n n N05 O27 24Z doub 10 n n C06 C11 24Z sing 11 n y C06 H06 24Z sing 12 n n C07 C06 24Z doub 13 n y C07 C08 24Z sing 14 n y C08 C09 24Z doub 15 n y C09 C10 24Z sing 16 n y C09 H09 24Z sing 17 n n C10 N04 24Z sing 18 n n C11 N05 24Z sing 19 n n C11 C10 24Z doub 20 n y C12 C07 24Z sing 21 n n C13 C14 24Z sing 22 n n C13 H113 24Z sing 23 n n C13 H213 24Z sing 24 n n C14 C18 24Z sing 25 n y C15 C14 24Z doub 26 n y C15 N03 24Z sing 27 n y C15 H15 24Z sing 28 n n C16 C17 24Z sing 29 n y C16 H16 24Z sing 30 n n C17 H17 24Z sing 31 n n C18 C17 24Z doub 32 n y C18 H18 24Z sing 33 n n C19 C20 24Z sing 34 n n C19 H119 24Z sing 35 n n C19 H219 24Z sing 36 n n C20 C21 24Z sing 37 n n C20 H120 24Z sing 38 n n C20 H220 24Z sing 39 n n C21 C22 24Z sing 40 n n C21 H121 24Z sing 41 n n C21 H221 24Z sing 42 n n C22 O25 24Z doub 43 n n C22 O24 24Z sing 44 n n O23 C12 24Z doub 45 n n O26 N05 24Z sing 46 n n O24 H19 24Z sing 47 n n # _atom_sites.entry_id 3RPO _atom_sites.fract_transf_matrix[1][1] 0.018646 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01397 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013763 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 777 1 EDO EDO . C 3 24Z A 1 778 1 24Z 24Z . D 4 HOH A 1 299 1 HOH HOH . D 4 HOH A 2 300 2 HOH HOH . D 4 HOH A 3 301 3 HOH HOH . D 4 HOH A 4 302 4 HOH HOH . D 4 HOH A 5 303 5 HOH HOH . D 4 HOH A 6 307 9 HOH HOH . D 4 HOH A 7 308 10 HOH HOH . D 4 HOH A 8 309 11 HOH HOH . D 4 HOH A 9 310 12 HOH HOH . D 4 HOH A 10 311 13 HOH HOH . D 4 HOH A 11 312 14 HOH HOH . D 4 HOH A 12 313 15 HOH HOH . D 4 HOH A 13 314 16 HOH HOH . D 4 HOH A 14 315 17 HOH HOH . D 4 HOH A 15 316 18 HOH HOH . D 4 HOH A 16 317 19 HOH HOH . D 4 HOH A 17 318 20 HOH HOH . D 4 HOH A 18 319 21 HOH HOH . D 4 HOH A 19 320 22 HOH HOH . D 4 HOH A 20 321 23 HOH HOH . D 4 HOH A 21 322 24 HOH HOH . D 4 HOH A 22 323 25 HOH HOH . D 4 HOH A 23 324 26 HOH HOH . D 4 HOH A 24 325 27 HOH HOH . D 4 HOH A 25 326 28 HOH HOH . D 4 HOH A 26 327 29 HOH HOH . D 4 HOH A 27 328 30 HOH HOH . D 4 HOH A 28 329 31 HOH HOH . D 4 HOH A 29 330 32 HOH HOH . D 4 HOH A 30 333 35 HOH HOH . D 4 HOH A 31 334 36 HOH HOH . D 4 HOH A 32 335 37 HOH HOH . D 4 HOH A 33 336 38 HOH HOH . D 4 HOH A 34 337 39 HOH HOH . D 4 HOH A 35 338 40 HOH HOH . D 4 HOH A 36 339 41 HOH HOH . D 4 HOH A 37 340 42 HOH HOH . D 4 HOH A 38 344 46 HOH HOH . D 4 HOH A 39 345 47 HOH HOH . D 4 HOH A 40 347 49 HOH HOH . D 4 HOH A 41 348 50 HOH HOH . D 4 HOH A 42 350 52 HOH HOH . D 4 HOH A 43 351 53 HOH HOH . D 4 HOH A 44 353 55 HOH HOH . D 4 HOH A 45 354 56 HOH HOH . D 4 HOH A 46 355 57 HOH HOH . D 4 HOH A 47 356 58 HOH HOH . D 4 HOH A 48 359 61 HOH HOH . D 4 HOH A 49 360 62 HOH HOH . D 4 HOH A 50 361 63 HOH HOH . D 4 HOH A 51 362 64 HOH HOH . D 4 HOH A 52 364 66 HOH HOH . D 4 HOH A 53 366 68 HOH HOH . D 4 HOH A 54 367 69 HOH HOH . D 4 HOH A 55 368 70 HOH HOH . D 4 HOH A 56 370 72 HOH HOH . D 4 HOH A 57 371 73 HOH HOH . D 4 HOH A 58 373 75 HOH HOH . D 4 HOH A 59 374 76 HOH HOH . D 4 HOH A 60 375 77 HOH HOH . D 4 HOH A 61 376 78 HOH HOH . D 4 HOH A 62 377 79 HOH HOH . D 4 HOH A 63 378 80 HOH HOH . D 4 HOH A 64 381 83 HOH HOH . D 4 HOH A 65 383 85 HOH HOH . D 4 HOH A 66 384 86 HOH HOH . D 4 HOH A 67 385 87 HOH HOH . D 4 HOH A 68 388 90 HOH HOH . D 4 HOH A 69 389 91 HOH HOH . D 4 HOH A 70 391 93 HOH HOH . D 4 HOH A 71 392 94 HOH HOH . D 4 HOH A 72 394 96 HOH HOH . D 4 HOH A 73 395 97 HOH HOH . D 4 HOH A 74 396 98 HOH HOH . D 4 HOH A 75 397 99 HOH HOH . D 4 HOH A 76 399 101 HOH HOH . D 4 HOH A 77 401 103 HOH HOH . D 4 HOH A 78 402 104 HOH HOH . D 4 HOH A 79 404 106 HOH HOH . D 4 HOH A 80 407 109 HOH HOH . D 4 HOH A 81 411 113 HOH HOH . D 4 HOH A 82 414 116 HOH HOH . D 4 HOH A 83 415 117 HOH HOH . D 4 HOH A 84 416 118 HOH HOH . D 4 HOH A 85 423 125 HOH HOH . D 4 HOH A 86 428 130 HOH HOH . D 4 HOH A 87 429 131 HOH HOH . D 4 HOH A 88 431 133 HOH HOH . D 4 HOH A 89 432 134 HOH HOH . D 4 HOH A 90 433 135 HOH HOH . D 4 HOH A 91 434 136 HOH HOH . D 4 HOH A 92 436 138 HOH HOH . D 4 HOH A 93 441 143 HOH HOH . D 4 HOH A 94 447 149 HOH HOH . D 4 HOH A 95 459 161 HOH HOH . D 4 HOH A 96 460 162 HOH HOH . D 4 HOH A 97 461 163 HOH HOH . D 4 HOH A 98 462 164 HOH HOH . D 4 HOH A 99 464 166 HOH HOH . D 4 HOH A 100 465 167 HOH HOH . D 4 HOH A 101 466 168 HOH HOH . D 4 HOH A 102 471 173 HOH HOH . D 4 HOH A 103 473 175 HOH HOH . D 4 HOH A 104 474 176 HOH HOH . D 4 HOH A 105 475 177 HOH HOH . D 4 HOH A 106 478 180 HOH HOH . D 4 HOH A 107 480 182 HOH HOH . D 4 HOH A 108 483 185 HOH HOH . D 4 HOH A 109 488 190 HOH HOH . D 4 HOH A 110 490 192 HOH HOH . D 4 HOH A 111 491 193 HOH HOH . D 4 HOH A 112 496 198 HOH HOH . D 4 HOH A 113 498 200 HOH HOH . D 4 HOH A 114 499 201 HOH HOH . D 4 HOH A 115 500 202 HOH HOH . D 4 HOH A 116 502 204 HOH HOH . D 4 HOH A 117 506 208 HOH HOH . D 4 HOH A 118 507 209 HOH HOH . D 4 HOH A 119 512 214 HOH HOH . D 4 HOH A 120 515 217 HOH HOH . D 4 HOH A 121 517 219 HOH HOH . D 4 HOH A 122 518 220 HOH HOH . D 4 HOH A 123 521 223 HOH HOH . D 4 HOH A 124 523 225 HOH HOH . D 4 HOH A 125 524 226 HOH HOH . D 4 HOH A 126 530 232 HOH HOH . D 4 HOH A 127 531 233 HOH HOH . D 4 HOH A 128 536 238 HOH HOH . D 4 HOH A 129 537 239 HOH HOH . D 4 HOH A 130 538 240 HOH HOH . D 4 HOH A 131 539 241 HOH HOH . D 4 HOH A 132 540 242 HOH HOH . D 4 HOH A 133 552 254 HOH HOH . D 4 HOH A 134 553 255 HOH HOH . D 4 HOH A 135 555 257 HOH HOH . D 4 HOH A 136 559 261 HOH HOH . D 4 HOH A 137 564 266 HOH HOH . D 4 HOH A 138 565 267 HOH HOH . D 4 HOH A 139 570 272 HOH HOH . D 4 HOH A 140 571 273 HOH HOH . D 4 HOH A 141 572 274 HOH HOH . D 4 HOH A 142 579 281 HOH HOH . D 4 HOH A 143 580 282 HOH HOH . D 4 HOH A 144 590 292 HOH HOH . D 4 HOH A 145 593 295 HOH HOH . D 4 HOH A 146 595 297 HOH HOH . D 4 HOH A 147 598 300 HOH HOH . D 4 HOH A 148 602 304 HOH HOH . D 4 HOH A 149 613 315 HOH HOH . D 4 HOH A 150 616 318 HOH HOH . D 4 HOH A 151 624 326 HOH HOH . D 4 HOH A 152 631 333 HOH HOH . D 4 HOH A 153 632 334 HOH HOH . D 4 HOH A 154 636 338 HOH HOH . D 4 HOH A 155 639 341 HOH HOH . D 4 HOH A 156 651 353 HOH HOH . D 4 HOH A 157 657 359 HOH HOH . D 4 HOH A 158 672 374 HOH HOH . D 4 HOH A 159 676 378 HOH HOH . D 4 HOH A 160 679 381 HOH HOH . D 4 HOH A 161 682 384 HOH HOH . D 4 HOH A 162 684 386 HOH HOH . D 4 HOH A 163 687 389 HOH HOH . D 4 HOH A 164 689 391 HOH HOH . D 4 HOH A 165 695 397 HOH HOH . D 4 HOH A 166 705 407 HOH HOH . D 4 HOH A 167 710 412 HOH HOH . D 4 HOH A 168 712 414 HOH HOH . D 4 HOH A 169 715 417 HOH HOH . D 4 HOH A 170 716 418 HOH HOH . D 4 HOH A 171 718 420 HOH HOH . D 4 HOH A 172 724 426 HOH HOH . D 4 HOH A 173 726 428 HOH HOH . D 4 HOH A 174 729 431 HOH HOH . D 4 HOH A 175 732 434 HOH HOH . D 4 HOH A 176 734 436 HOH HOH . D 4 HOH A 177 740 442 HOH HOH . D 4 HOH A 178 745 447 HOH HOH . D 4 HOH A 179 747 449 HOH HOH . D 4 HOH A 180 748 450 HOH HOH . D 4 HOH A 181 749 451 HOH HOH . D 4 HOH A 182 750 452 HOH HOH . D 4 HOH A 183 751 453 HOH HOH . D 4 HOH A 184 753 455 HOH HOH . D 4 HOH A 185 754 456 HOH HOH . D 4 HOH A 186 755 457 HOH HOH . D 4 HOH A 187 756 458 HOH HOH . D 4 HOH A 188 757 459 HOH HOH . D 4 HOH A 189 759 461 HOH HOH . D 4 HOH A 190 760 462 HOH HOH . D 4 HOH A 191 761 463 HOH HOH . D 4 HOH A 192 762 464 HOH HOH . D 4 HOH A 193 763 465 HOH HOH . D 4 HOH A 194 764 466 HOH HOH . D 4 HOH A 195 765 467 HOH HOH . D 4 HOH A 196 766 468 HOH HOH . D 4 HOH A 197 767 469 HOH HOH . D 4 HOH A 198 768 470 HOH HOH . D 4 HOH A 199 769 471 HOH HOH . D 4 HOH A 200 770 472 HOH HOH . D 4 HOH A 201 774 476 HOH HOH . D 4 HOH A 202 775 477 HOH HOH . D 4 HOH A 203 776 478 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N01 24Z . . . C 3 63.787 82.024 24.274 1 19.6 ? N01 24Z 778 A 1 HETATM 2 N N02 24Z . . . C 3 66.932 81.867 21.582 1 16.22 ? N02 24Z 778 A 1 HETATM 3 N N03 24Z . . . C 3 62.315 85.003 26.999 1 21.51 ? N03 24Z 778 A 1 HETATM 4 N N04 24Z . . . C 3 66.412 79.845 27.573 1 30.93 ? N04 24Z 778 A 1 HETATM 5 N N05 24Z . . . C 3 68.639 80.035 25.885 1 29.31 ? N05 24Z 778 A 1 HETATM 6 C C06 24Z . . . C 3 67.344 81.115 24.254 1 23.63 ? C06 24Z 778 A 1 HETATM 7 C C07 24Z . . . C 3 66.09 81.643 23.804 1 20.54 ? C07 24Z 778 A 1 HETATM 8 C C08 24Z . . . C 3 64.936 81.55 24.666 1 21.75 ? C08 24Z 778 A 1 HETATM 9 C C09 24Z . . . C 3 65.084 80.924 25.957 1 25.6 ? C09 24Z 778 A 1 HETATM 10 C C10 24Z . . . C 3 66.33 80.399 26.401 1 28.09 ? C10 24Z 778 A 1 HETATM 11 C C11 24Z . . . C 3 67.486 80.494 25.535 1 27.49 ? C11 24Z 778 A 1 HETATM 12 C C12 24Z . . . C 3 66.031 82.226 22.532 1 18.49 ? C12 24Z 778 A 1 HETATM 13 C C13 24Z . . . C 3 62.476 81.764 24.942 1 19.98 ? C13 24Z 778 A 1 HETATM 14 C C14 24Z . . . C 3 62.266 82.723 26.102 1 19.69 ? C14 24Z 778 A 1 HETATM 15 C C15 24Z . . . C 3 62.487 84.108 25.963 1 19.93 ? C15 24Z 778 A 1 HETATM 16 C C16 24Z . . . C 3 61.909 84.504 28.212 1 21.43 ? C16 24Z 778 A 1 HETATM 17 C C17 24Z . . . C 3 61.664 83.139 28.448 1 20.15 ? C17 24Z 778 A 1 HETATM 18 C C18 24Z . . . C 3 61.849 82.246 27.373 1 20.6 ? C18 24Z 778 A 1 HETATM 19 C C19 24Z . . . C 3 65.439 78.823 28.015 1 35.11 ? C19 24Z 778 A 1 HETATM 20 C C20 24Z . . . C 3 65.104 79.02 29.489 1 38.16 ? C20 24Z 778 A 1 HETATM 21 C C21 24Z . . . C 3 65.652 77.84 30.287 1 41.28 ? C21 24Z 778 A 1 HETATM 22 C C22 24Z . . . C 3 65.223 77.942 31.737 1 42.67 ? C22 24Z 778 A 1 HETATM 23 O O23 24Z . . . C 3 65.189 83.042 22.238 1 16.28 ? O23 24Z 778 A 1 HETATM 24 O O24 24Z . . . C 3 65.947 78.665 32.603 1 43.06 ? O24 24Z 778 A 1 HETATM 25 O O25 24Z . . . C 3 64.228 77.365 32.114 1 44.27 ? O25 24Z 778 A 1 HETATM 26 O O26 24Z . . . C 3 69.705 80.253 25.13 1 31.25 ? O26 24Z 778 A 1 HETATM 27 O O27 24Z . . . C 3 68.788 79.344 26.982 1 32.06 ? O27 24Z 778 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 349 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #