data_3RPQ # _model_server_result.job_id Oh_pe_g7Va2zToEPEsLsng _model_server_result.datetime_utc '2025-06-20 12:43:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rpq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 3RPQ # _exptl.entry_id 3RPQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.81 _cell.angle_gamma 90 _cell.entry_id 3RPQ _cell.length_a 45.59 _cell.length_b 102.81 _cell.length_c 54.24 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RPQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # _chem_comp.formula 'C10 H12 N5 O6 P' _chem_comp.formula_weight 329.206 _chem_comp.id CMP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'CYCLIC AMP;CAMP' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P CMP doub 70 n n P O2P CMP sing 71 n n P O5' CMP sing 72 n n P O3' CMP sing 73 n n O2P HOP2 CMP sing 74 n n O5' C5' CMP sing 75 n n C5' C4' CMP sing 76 n n C5' "H5'1" CMP sing 77 n n C5' "H5'2" CMP sing 78 n n C4' O4' CMP sing 79 n n C4' C3' CMP sing 80 n n C4' H4' CMP sing 81 n n O4' C1' CMP sing 82 n n C3' O3' CMP sing 83 n n C3' C2' CMP sing 84 n n C3' H3' CMP sing 85 n n C2' O2' CMP sing 86 n n C2' C1' CMP sing 87 n n C2' H2' CMP sing 88 n n O2' HO2' CMP sing 89 n n C1' N9 CMP sing 90 n n C1' H1' CMP sing 91 n n N9 C8 CMP sing 92 n y N9 C4 CMP sing 93 n y C8 N7 CMP doub 94 n y C8 H8 CMP sing 95 n n N7 C5 CMP sing 96 n y C5 C6 CMP sing 97 n y C5 C4 CMP doub 98 n y C6 N6 CMP sing 99 n n C6 N1 CMP doub 100 n y N6 HN61 CMP sing 101 n n N6 HN62 CMP sing 102 n n N1 C2 CMP sing 103 n y C2 N3 CMP doub 104 n y C2 H2 CMP sing 105 n n N3 C4 CMP sing 106 n y # _atom_sites.entry_id 3RPQ _atom_sites.fract_transf_matrix[1][1] 0.021935 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008337 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009727 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019723 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CMP A 1 301 301 CMP CMP . D 2 CMP A 1 302 302 CMP CMP . E 3 PO4 A 1 210 1 PO4 PO4 . F 2 CMP B 1 401 401 CMP CMP . G 2 CMP B 1 402 402 CMP CMP . H 4 HOH A 1 211 1 HOH HOH . H 4 HOH A 2 212 2 HOH HOH . H 4 HOH A 3 213 4 HOH HOH . H 4 HOH A 4 214 5 HOH HOH . H 4 HOH A 5 215 6 HOH HOH . H 4 HOH A 6 216 9 HOH HOH . H 4 HOH A 7 217 10 HOH HOH . H 4 HOH A 8 218 12 HOH HOH . H 4 HOH A 9 219 13 HOH HOH . H 4 HOH A 10 220 15 HOH HOH . I 4 HOH B 1 210 3 HOH HOH . I 4 HOH B 2 211 7 HOH HOH . I 4 HOH B 3 212 8 HOH HOH . I 4 HOH B 4 213 11 HOH HOH . I 4 HOH B 5 214 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P CMP . . . D 2 -8.572 16.177 36.091 1 40.31 ? P CMP 302 A 1 HETATM 2 O O1P CMP . . . D 2 -7.86 16.175 37.418 1 33.72 ? O1P CMP 302 A 1 HETATM 3 O O2P CMP . . . D 2 -9.749 17.055 35.913 1 35.31 ? O2P CMP 302 A 1 HETATM 4 O O5' CMP . . . D 2 -7.472 16.766 34.996 1 32.14 ? O5' CMP 302 A 1 HETATM 5 C C5' CMP . . . D 2 -6.934 16.055 33.83 1 35.04 ? C5' CMP 302 A 1 HETATM 6 C C4' CMP . . . D 2 -7.468 14.619 33.593 1 33.8 ? C4' CMP 302 A 1 HETATM 7 O O4' CMP . . . D 2 -6.528 13.716 33.092 1 33.88 ? O4' CMP 302 A 1 HETATM 8 C C3' CMP . . . D 2 -7.863 13.988 34.884 1 35.69 ? C3' CMP 302 A 1 HETATM 9 O O3' CMP . . . D 2 -8.929 14.691 35.564 1 35.78 ? O3' CMP 302 A 1 HETATM 10 C C2' CMP . . . D 2 -8.055 12.565 34.496 1 34.54 ? C2' CMP 302 A 1 HETATM 11 O O2' CMP . . . D 2 -9.366 12.292 34.039 1 37.12 ? O2' CMP 302 A 1 HETATM 12 C C1' CMP . . . D 2 -7.107 12.424 33.305 1 31.49 ? C1' CMP 302 A 1 HETATM 13 N N9 CMP . . . D 2 -5.967 11.492 33.537 1 28.85 ? N9 CMP 302 A 1 HETATM 14 C C8 CMP . . . D 2 -5.384 10.638 32.629 1 29.41 ? C8 CMP 302 A 1 HETATM 15 N N7 CMP . . . D 2 -4.39 9.928 33.094 1 29.28 ? N7 CMP 302 A 1 HETATM 16 C C5 CMP . . . D 2 -4.295 10.334 34.42 1 28.25 ? C5 CMP 302 A 1 HETATM 17 C C6 CMP . . . D 2 -3.422 9.957 35.488 1 27.95 ? C6 CMP 302 A 1 HETATM 18 N N6 CMP . . . D 2 -2.472 9.04 35.311 1 26.92 ? N6 CMP 302 A 1 HETATM 19 N N1 CMP . . . D 2 -3.575 10.562 36.721 1 26.46 ? N1 CMP 302 A 1 HETATM 20 C C2 CMP . . . D 2 -4.546 11.482 36.87 1 25.7 ? C2 CMP 302 A 1 HETATM 21 N N3 CMP . . . D 2 -5.433 11.923 35.955 1 27.21 ? N3 CMP 302 A 1 HETATM 22 C C4 CMP . . . D 2 -5.246 11.292 34.715 1 28.04 ? C4 CMP 302 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 22 #