data_3RPQ # _model_server_result.job_id EOg12KAInFhWE0xGK5s3jQ _model_server_result.datetime_utc '2024-10-11 03:13:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rpq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 3RPQ # _exptl.entry_id 3RPQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.81 _cell.angle_gamma 90 _cell.entry_id 3RPQ _cell.length_a 45.59 _cell.length_b 102.81 _cell.length_c 54.24 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RPQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # _chem_comp.formula 'C10 H12 N5 O6 P' _chem_comp.formula_weight 329.206 _chem_comp.id CMP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'CYCLIC AMP;CAMP' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P CMP doub 70 n n P O2P CMP sing 71 n n P O5' CMP sing 72 n n P O3' CMP sing 73 n n O2P HOP2 CMP sing 74 n n O5' C5' CMP sing 75 n n C5' C4' CMP sing 76 n n C5' "H5'1" CMP sing 77 n n C5' "H5'2" CMP sing 78 n n C4' O4' CMP sing 79 n n C4' C3' CMP sing 80 n n C4' H4' CMP sing 81 n n O4' C1' CMP sing 82 n n C3' O3' CMP sing 83 n n C3' C2' CMP sing 84 n n C3' H3' CMP sing 85 n n C2' O2' CMP sing 86 n n C2' C1' CMP sing 87 n n C2' H2' CMP sing 88 n n O2' HO2' CMP sing 89 n n C1' N9 CMP sing 90 n n C1' H1' CMP sing 91 n n N9 C8 CMP sing 92 n y N9 C4 CMP sing 93 n y C8 N7 CMP doub 94 n y C8 H8 CMP sing 95 n n N7 C5 CMP sing 96 n y C5 C6 CMP sing 97 n y C5 C4 CMP doub 98 n y C6 N6 CMP sing 99 n n C6 N1 CMP doub 100 n y N6 HN61 CMP sing 101 n n N6 HN62 CMP sing 102 n n N1 C2 CMP sing 103 n y C2 N3 CMP doub 104 n y C2 H2 CMP sing 105 n n N3 C4 CMP sing 106 n y # _atom_sites.entry_id 3RPQ _atom_sites.fract_transf_matrix[1][1] 0.021935 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008337 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009727 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019723 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CMP A 1 301 301 CMP CMP . D 2 CMP A 1 302 302 CMP CMP . E 3 PO4 A 1 210 1 PO4 PO4 . F 2 CMP B 1 401 401 CMP CMP . G 2 CMP B 1 402 402 CMP CMP . H 4 HOH A 1 211 1 HOH HOH . H 4 HOH A 2 212 2 HOH HOH . H 4 HOH A 3 213 4 HOH HOH . H 4 HOH A 4 214 5 HOH HOH . H 4 HOH A 5 215 6 HOH HOH . H 4 HOH A 6 216 9 HOH HOH . H 4 HOH A 7 217 10 HOH HOH . H 4 HOH A 8 218 12 HOH HOH . H 4 HOH A 9 219 13 HOH HOH . H 4 HOH A 10 220 15 HOH HOH . I 4 HOH B 1 210 3 HOH HOH . I 4 HOH B 2 211 7 HOH HOH . I 4 HOH B 3 212 8 HOH HOH . I 4 HOH B 4 213 11 HOH HOH . I 4 HOH B 5 214 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P CMP . . . F 2 6.721 0.371 8.623 1 29.88 ? P CMP 401 B 1 HETATM 2 O O1P CMP . . . F 2 6.271 1.698 9.117 1 31.1 ? O1P CMP 401 B 1 HETATM 3 O O2P CMP . . . F 2 7.131 0.245 7.218 1 32.59 ? O2P CMP 401 B 1 HETATM 4 O O5' CMP . . . F 2 8.115 0.017 9.471 1 31.46 ? O5' CMP 401 B 1 HETATM 5 C C5' CMP . . . F 2 8.26 -0.989 10.536 1 29.74 ? C5' CMP 401 B 1 HETATM 6 C C4' CMP . . . F 2 6.989 -1.809 10.891 1 29.88 ? C4' CMP 401 B 1 HETATM 7 O O4' CMP . . . F 2 6.724 -1.911 12.26 1 29.43 ? O4' CMP 401 B 1 HETATM 8 C C3' CMP . . . F 2 5.756 -1.111 10.418 1 30.83 ? C3' CMP 401 B 1 HETATM 9 O O3' CMP . . . F 2 5.727 -0.814 9.017 1 33.07 ? O3' CMP 401 B 1 HETATM 10 C C2' CMP . . . F 2 4.697 -1.897 11.034 1 29.79 ? C2' CMP 401 B 1 HETATM 11 O O2' CMP . . . F 2 4.394 -3.047 10.27 1 28.78 ? O2' CMP 401 B 1 HETATM 12 C C1' CMP . . . F 2 5.358 -2.359 12.334 1 27.68 ? C1' CMP 401 B 1 HETATM 13 N N9 CMP . . . F 2 4.768 -1.67 13.515 1 26.58 ? N9 CMP 401 B 1 HETATM 14 C C8 CMP . . . F 2 5.092 -0.409 14.009 1 26.41 ? C8 CMP 401 B 1 HETATM 15 N N7 CMP . . . F 2 4.427 -0.032 15.06 1 26.86 ? N7 CMP 401 B 1 HETATM 16 C C5 CMP . . . F 2 3.593 -1.101 15.303 1 27.19 ? C5 CMP 401 B 1 HETATM 17 C C6 CMP . . . F 2 2.609 -1.334 16.304 1 28.2 ? C6 CMP 401 B 1 HETATM 18 N N6 CMP . . . F 2 2.354 -0.423 17.241 1 29.02 ? N6 CMP 401 B 1 HETATM 19 N N1 CMP . . . F 2 1.919 -2.531 16.289 1 26.06 ? N1 CMP 401 B 1 HETATM 20 C C2 CMP . . . F 2 2.212 -3.431 15.313 1 25.23 ? C2 CMP 401 B 1 HETATM 21 N N3 CMP . . . F 2 3.107 -3.341 14.314 1 26.18 ? N3 CMP 401 B 1 HETATM 22 C C4 CMP . . . F 2 3.785 -2.122 14.362 1 26.74 ? C4 CMP 401 B 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 22 #