data_3RPW # _model_server_result.job_id vITrj5qai8eff6smDtD-AQ _model_server_result.datetime_utc '2024-11-22 17:44:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rpw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":376}' # _entry.id 3RPW # _exptl.entry_id 3RPW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 60.055 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description UREA _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3RPW _cell.length_a 80.711 _cell.length_b 80.711 _cell.length_c 109.65 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RPW _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id O _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 103 A CYS 100 1_555 A SG CYS 104 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? covale ? covale1 A C ILE 36 A ILE 33 1_555 A N MSE 37 A MSE 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C MSE 37 A MSE 34 1_555 A N GLN 38 A GLN 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C VAL 51 A VAL 48 1_555 A N MSE 52 A MSE 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 A C MSE 52 A MSE 49 1_555 A N TYR 53 A TYR 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 A C ALA 123 A ALA 120 1_555 A N MSE 124 A MSE 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 A C MSE 124 A MSE 121 1_555 A N PRO 125 A PRO 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale7 A C CYS 173 A CYS 170 1_555 A N MSE 174 A MSE 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale8 A C MSE 174 A MSE 171 1_555 A N PRO 175 A PRO 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale9 A C LEU 186 A LEU 183 1_555 A N MSE 187 A MSE 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale10 A C MSE 187 A MSE 184 1_555 A N ALA 188 A ALA 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale11 A C ASP 200 A ASP 197 1_555 A N MSE 201 A MSE 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale12 A C MSE 201 A MSE 198 1_555 A N ASP 202 A ASP 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale13 A C ASP 235 A ASP 232 1_555 A N MSE 236 A MSE 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale14 A C MSE 236 A MSE 233 1_555 A N CYS 237 A CYS 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale15 A C SER 243 A SER 240 1_555 A N MSE 244 A MSE 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale16 A C MSE 244 A MSE 241 1_555 A N SER 245 A SER 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale17 A C ALA 361 A ALA 358 1_555 A N MSE 362 A MSE 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale18 A C MSE 362 A MSE 359 1_555 A N LEU 363 A LEU 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C H4 N2 O' _chem_comp.formula_weight 60.055 _chem_comp.id URE _chem_comp.mon_nstd_flag . _chem_comp.name UREA _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O URE doub 375 n n C N1 URE sing 376 n n C N2 URE sing 377 n n N1 HN11 URE sing 378 n n N1 HN12 URE sing 379 n n N2 HN21 URE sing 380 n n N2 HN22 URE sing 381 n n # _atom_sites.entry_id 3RPW _atom_sites.fract_transf_matrix[1][1] 0.01239 _atom_sites.fract_transf_matrix[1][2] 0.007153 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014307 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00912 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 363 1 GOL GOL . C 2 GOL A 1 364 2 GOL GOL . D 2 GOL A 1 365 3 GOL GOL . E 3 FMT A 1 366 1 FMT FMT . F 3 FMT A 1 367 2 FMT FMT . G 3 FMT A 1 368 3 FMT FMT . H 3 FMT A 1 369 4 FMT FMT . I 3 FMT A 1 370 5 FMT FMT . J 3 FMT A 1 371 6 FMT FMT . K 3 FMT A 1 372 7 FMT FMT . L 3 FMT A 1 373 8 FMT FMT . M 3 FMT A 1 374 9 FMT FMT . N 3 FMT A 1 375 10 FMT FMT . O 4 URE A 1 376 1 URE URE . P 5 HOH A 1 377 1 HOH HOH . P 5 HOH A 2 378 2 HOH HOH . P 5 HOH A 3 379 3 HOH HOH . P 5 HOH A 4 380 4 HOH HOH . P 5 HOH A 5 381 5 HOH HOH . P 5 HOH A 6 382 6 HOH HOH . P 5 HOH A 7 383 7 HOH HOH . P 5 HOH A 8 384 8 HOH HOH . P 5 HOH A 9 385 9 HOH HOH . P 5 HOH A 10 386 10 HOH HOH . P 5 HOH A 11 387 11 HOH HOH . P 5 HOH A 12 388 12 HOH HOH . P 5 HOH A 13 389 13 HOH HOH . P 5 HOH A 14 390 14 HOH HOH . P 5 HOH A 15 391 15 HOH HOH . P 5 HOH A 16 392 16 HOH HOH . P 5 HOH A 17 393 17 HOH HOH . P 5 HOH A 18 394 18 HOH HOH . P 5 HOH A 19 395 19 HOH HOH . P 5 HOH A 20 396 20 HOH HOH . P 5 HOH A 21 397 21 HOH HOH . P 5 HOH A 22 398 22 HOH HOH . P 5 HOH A 23 399 23 HOH HOH . P 5 HOH A 24 400 24 HOH HOH . P 5 HOH A 25 401 25 HOH HOH . P 5 HOH A 26 402 26 HOH HOH . P 5 HOH A 27 403 27 HOH HOH . P 5 HOH A 28 404 28 HOH HOH . P 5 HOH A 29 405 29 HOH HOH . P 5 HOH A 30 406 30 HOH HOH . P 5 HOH A 31 407 31 HOH HOH . P 5 HOH A 32 408 32 HOH HOH . P 5 HOH A 33 409 33 HOH HOH . P 5 HOH A 34 410 34 HOH HOH . P 5 HOH A 35 411 35 HOH HOH . P 5 HOH A 36 412 36 HOH HOH . P 5 HOH A 37 413 37 HOH HOH . P 5 HOH A 38 414 38 HOH HOH . P 5 HOH A 39 415 39 HOH HOH . P 5 HOH A 40 416 40 HOH HOH . P 5 HOH A 41 417 41 HOH HOH . P 5 HOH A 42 418 42 HOH HOH . P 5 HOH A 43 419 43 HOH HOH . P 5 HOH A 44 420 44 HOH HOH . P 5 HOH A 45 421 45 HOH HOH . P 5 HOH A 46 422 46 HOH HOH . P 5 HOH A 47 423 47 HOH HOH . P 5 HOH A 48 424 48 HOH HOH . P 5 HOH A 49 425 49 HOH HOH . P 5 HOH A 50 426 50 HOH HOH . P 5 HOH A 51 427 51 HOH HOH . P 5 HOH A 52 428 52 HOH HOH . P 5 HOH A 53 429 53 HOH HOH . P 5 HOH A 54 430 54 HOH HOH . P 5 HOH A 55 431 55 HOH HOH . P 5 HOH A 56 432 56 HOH HOH . P 5 HOH A 57 433 57 HOH HOH . P 5 HOH A 58 434 58 HOH HOH . P 5 HOH A 59 435 59 HOH HOH . P 5 HOH A 60 436 60 HOH HOH . P 5 HOH A 61 437 61 HOH HOH . P 5 HOH A 62 438 62 HOH HOH . P 5 HOH A 63 439 63 HOH HOH . P 5 HOH A 64 440 64 HOH HOH . P 5 HOH A 65 441 65 HOH HOH . P 5 HOH A 66 442 66 HOH HOH . P 5 HOH A 67 443 67 HOH HOH . P 5 HOH A 68 444 68 HOH HOH . P 5 HOH A 69 445 69 HOH HOH . P 5 HOH A 70 446 70 HOH HOH . P 5 HOH A 71 447 71 HOH HOH . P 5 HOH A 72 448 72 HOH HOH . P 5 HOH A 73 449 73 HOH HOH . P 5 HOH A 74 450 74 HOH HOH . P 5 HOH A 75 451 75 HOH HOH . P 5 HOH A 76 452 76 HOH HOH . P 5 HOH A 77 453 77 HOH HOH . P 5 HOH A 78 454 78 HOH HOH . P 5 HOH A 79 455 79 HOH HOH . P 5 HOH A 80 456 80 HOH HOH . P 5 HOH A 81 457 81 HOH HOH . P 5 HOH A 82 458 82 HOH HOH . P 5 HOH A 83 459 83 HOH HOH . P 5 HOH A 84 460 84 HOH HOH . P 5 HOH A 85 461 85 HOH HOH . P 5 HOH A 86 462 86 HOH HOH . P 5 HOH A 87 463 87 HOH HOH . P 5 HOH A 88 464 88 HOH HOH . P 5 HOH A 89 465 89 HOH HOH . P 5 HOH A 90 466 90 HOH HOH . P 5 HOH A 91 467 91 HOH HOH . P 5 HOH A 92 468 92 HOH HOH . P 5 HOH A 93 469 93 HOH HOH . P 5 HOH A 94 470 94 HOH HOH . P 5 HOH A 95 471 95 HOH HOH . P 5 HOH A 96 472 96 HOH HOH . P 5 HOH A 97 473 97 HOH HOH . P 5 HOH A 98 474 98 HOH HOH . P 5 HOH A 99 475 99 HOH HOH . P 5 HOH A 100 476 100 HOH HOH . P 5 HOH A 101 477 101 HOH HOH . P 5 HOH A 102 478 102 HOH HOH . P 5 HOH A 103 479 103 HOH HOH . P 5 HOH A 104 480 104 HOH HOH . P 5 HOH A 105 481 105 HOH HOH . P 5 HOH A 106 482 106 HOH HOH . P 5 HOH A 107 483 107 HOH HOH . P 5 HOH A 108 484 108 HOH HOH . P 5 HOH A 109 485 109 HOH HOH . P 5 HOH A 110 486 110 HOH HOH . P 5 HOH A 111 487 111 HOH HOH . P 5 HOH A 112 488 112 HOH HOH . P 5 HOH A 113 489 113 HOH HOH . P 5 HOH A 114 490 114 HOH HOH . P 5 HOH A 115 491 115 HOH HOH . P 5 HOH A 116 492 116 HOH HOH . P 5 HOH A 117 493 117 HOH HOH . P 5 HOH A 118 494 118 HOH HOH . P 5 HOH A 119 495 119 HOH HOH . P 5 HOH A 120 496 120 HOH HOH . P 5 HOH A 121 497 121 HOH HOH . P 5 HOH A 122 498 122 HOH HOH . P 5 HOH A 123 499 123 HOH HOH . P 5 HOH A 124 500 124 HOH HOH . P 5 HOH A 125 501 125 HOH HOH . P 5 HOH A 126 502 126 HOH HOH . P 5 HOH A 127 503 127 HOH HOH . P 5 HOH A 128 504 128 HOH HOH . P 5 HOH A 129 505 129 HOH HOH . P 5 HOH A 130 506 130 HOH HOH . P 5 HOH A 131 507 131 HOH HOH . P 5 HOH A 132 508 132 HOH HOH . P 5 HOH A 133 509 133 HOH HOH . P 5 HOH A 134 510 134 HOH HOH . P 5 HOH A 135 511 135 HOH HOH . P 5 HOH A 136 512 136 HOH HOH . P 5 HOH A 137 513 137 HOH HOH . P 5 HOH A 138 514 138 HOH HOH . P 5 HOH A 139 515 139 HOH HOH . P 5 HOH A 140 516 140 HOH HOH . P 5 HOH A 141 517 141 HOH HOH . P 5 HOH A 142 518 142 HOH HOH . P 5 HOH A 143 519 143 HOH HOH . P 5 HOH A 144 520 144 HOH HOH . P 5 HOH A 145 521 145 HOH HOH . P 5 HOH A 146 522 146 HOH HOH . P 5 HOH A 147 523 147 HOH HOH . P 5 HOH A 148 524 148 HOH HOH . P 5 HOH A 149 525 149 HOH HOH . P 5 HOH A 150 526 150 HOH HOH . P 5 HOH A 151 527 151 HOH HOH . P 5 HOH A 152 528 152 HOH HOH . P 5 HOH A 153 529 153 HOH HOH . P 5 HOH A 154 530 154 HOH HOH . P 5 HOH A 155 531 155 HOH HOH . P 5 HOH A 156 532 156 HOH HOH . P 5 HOH A 157 533 157 HOH HOH . P 5 HOH A 158 534 158 HOH HOH . P 5 HOH A 159 535 159 HOH HOH . P 5 HOH A 160 536 160 HOH HOH . P 5 HOH A 161 537 161 HOH HOH . P 5 HOH A 162 538 162 HOH HOH . P 5 HOH A 163 539 163 HOH HOH . P 5 HOH A 164 540 164 HOH HOH . P 5 HOH A 165 541 165 HOH HOH . P 5 HOH A 166 542 166 HOH HOH . P 5 HOH A 167 543 167 HOH HOH . P 5 HOH A 168 544 168 HOH HOH . P 5 HOH A 169 545 169 HOH HOH . P 5 HOH A 170 546 170 HOH HOH . P 5 HOH A 171 547 171 HOH HOH . P 5 HOH A 172 548 172 HOH HOH . P 5 HOH A 173 549 173 HOH HOH . P 5 HOH A 174 550 174 HOH HOH . P 5 HOH A 175 551 175 HOH HOH . P 5 HOH A 176 552 176 HOH HOH . P 5 HOH A 177 553 177 HOH HOH . P 5 HOH A 178 554 178 HOH HOH . P 5 HOH A 179 555 179 HOH HOH . P 5 HOH A 180 556 180 HOH HOH . P 5 HOH A 181 557 181 HOH HOH . P 5 HOH A 182 558 182 HOH HOH . P 5 HOH A 183 559 183 HOH HOH . P 5 HOH A 184 560 184 HOH HOH . P 5 HOH A 185 561 185 HOH HOH . P 5 HOH A 186 562 186 HOH HOH . P 5 HOH A 187 563 187 HOH HOH . P 5 HOH A 188 564 188 HOH HOH . P 5 HOH A 189 565 189 HOH HOH . P 5 HOH A 190 566 190 HOH HOH . P 5 HOH A 191 567 191 HOH HOH . P 5 HOH A 192 568 192 HOH HOH . P 5 HOH A 193 569 193 HOH HOH . P 5 HOH A 194 570 194 HOH HOH . P 5 HOH A 195 571 195 HOH HOH . P 5 HOH A 196 572 196 HOH HOH . P 5 HOH A 197 573 197 HOH HOH . P 5 HOH A 198 574 198 HOH HOH . P 5 HOH A 199 575 199 HOH HOH . P 5 HOH A 200 576 200 HOH HOH . P 5 HOH A 201 577 201 HOH HOH . P 5 HOH A 202 578 202 HOH HOH . P 5 HOH A 203 579 203 HOH HOH . P 5 HOH A 204 580 204 HOH HOH . P 5 HOH A 205 581 205 HOH HOH . P 5 HOH A 206 582 206 HOH HOH . P 5 HOH A 207 583 207 HOH HOH . P 5 HOH A 208 584 208 HOH HOH . P 5 HOH A 209 585 209 HOH HOH . P 5 HOH A 210 586 210 HOH HOH . P 5 HOH A 211 587 211 HOH HOH . P 5 HOH A 212 588 212 HOH HOH . P 5 HOH A 213 589 213 HOH HOH . P 5 HOH A 214 590 214 HOH HOH . P 5 HOH A 215 591 215 HOH HOH . P 5 HOH A 216 592 216 HOH HOH . P 5 HOH A 217 593 217 HOH HOH . P 5 HOH A 218 594 218 HOH HOH . P 5 HOH A 219 595 219 HOH HOH . P 5 HOH A 220 596 220 HOH HOH . P 5 HOH A 221 597 221 HOH HOH . P 5 HOH A 222 598 222 HOH HOH . P 5 HOH A 223 599 223 HOH HOH . P 5 HOH A 224 600 224 HOH HOH . P 5 HOH A 225 601 225 HOH HOH . P 5 HOH A 226 602 226 HOH HOH . P 5 HOH A 227 603 227 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C URE . . . O 4 3.077 55.699 4.009 1 66.65 ? C URE 376 A 1 HETATM 2 O O URE . . . O 4 2.618 54.67 3.625 1 67.77 ? O URE 376 A 1 HETATM 3 N N1 URE . . . O 4 3.512 56.601 3.136 1 65.89 ? N1 URE 376 A 1 HETATM 4 N N2 URE . . . O 4 3.326 55.866 5.302 1 60.92 ? N2 URE 376 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #