data_3RQ2 # _model_server_result.job_id 4LsNka62_mxGw5681LDt0g _model_server_result.datetime_utc '2024-11-14 17:28:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rq2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":278}' # _entry.id 3RQ2 # _exptl.entry_id 3RQ2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3RQ2 _cell.length_a 91.93 _cell.length_b 91.93 _cell.length_c 169.626 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RQ2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -91.93 -91.93 0 3 'crystal symmetry operation' 3_455 -y-1,x,z 0 -1 0 1 0 0 0 0 1 -91.93 0 0 4 'crystal symmetry operation' 4_545 y,-x-1,z 0 1 0 -1 0 0 0 0 1 0 -91.93 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B MG MG . A MG 277 1_555 C O3P AMP . A AMP 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc2 B MG MG . A MG 277 1_555 E O HOH . A HOH 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc3 B MG MG . A MG 277 1_555 E O HOH . A HOH 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc4 B MG MG . A MG 277 1_555 E O HOH . A HOH 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc5 B MG MG . A MG 277 1_555 E O HOH . A HOH 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 3RQ2 _atom_sites.fract_transf_matrix[1][1] 0.010878 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010878 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005895 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 277 1 MG MG . C 3 AMP A 1 278 2 AMP AMP . D 4 NAX A 1 279 3 NAX NAX . E 5 HOH A 1 280 1 HOH HOH . E 5 HOH A 2 281 2 HOH HOH . E 5 HOH A 3 282 3 HOH HOH . E 5 HOH A 4 283 4 HOH HOH . E 5 HOH A 5 284 5 HOH HOH . E 5 HOH A 6 285 6 HOH HOH . E 5 HOH A 7 286 7 HOH HOH . E 5 HOH A 8 287 8 HOH HOH . E 5 HOH A 9 288 9 HOH HOH . E 5 HOH A 10 289 10 HOH HOH . E 5 HOH A 11 290 11 HOH HOH . E 5 HOH A 12 291 12 HOH HOH . E 5 HOH A 13 292 13 HOH HOH . E 5 HOH A 14 293 14 HOH HOH . E 5 HOH A 15 294 15 HOH HOH . E 5 HOH A 16 295 16 HOH HOH . E 5 HOH A 17 296 17 HOH HOH . E 5 HOH A 18 297 18 HOH HOH . E 5 HOH A 19 298 19 HOH HOH . E 5 HOH A 20 299 20 HOH HOH . E 5 HOH A 21 300 21 HOH HOH . E 5 HOH A 22 301 22 HOH HOH . E 5 HOH A 23 302 23 HOH HOH . E 5 HOH A 24 303 24 HOH HOH . E 5 HOH A 25 304 25 HOH HOH . E 5 HOH A 26 305 26 HOH HOH . E 5 HOH A 27 306 27 HOH HOH . E 5 HOH A 28 307 28 HOH HOH . E 5 HOH A 29 308 29 HOH HOH . E 5 HOH A 30 309 30 HOH HOH . E 5 HOH A 31 310 31 HOH HOH . E 5 HOH A 32 311 32 HOH HOH . E 5 HOH A 33 312 33 HOH HOH . E 5 HOH A 34 313 34 HOH HOH . E 5 HOH A 35 314 35 HOH HOH . E 5 HOH A 36 315 36 HOH HOH . E 5 HOH A 37 316 37 HOH HOH . E 5 HOH A 38 317 38 HOH HOH . E 5 HOH A 39 318 39 HOH HOH . E 5 HOH A 40 319 40 HOH HOH . E 5 HOH A 41 320 41 HOH HOH . E 5 HOH A 42 321 42 HOH HOH . E 5 HOH A 43 322 43 HOH HOH . E 5 HOH A 44 323 44 HOH HOH . E 5 HOH A 45 324 45 HOH HOH . E 5 HOH A 46 325 46 HOH HOH . E 5 HOH A 47 326 47 HOH HOH . E 5 HOH A 48 327 48 HOH HOH . E 5 HOH A 49 328 49 HOH HOH . E 5 HOH A 50 329 50 HOH HOH . E 5 HOH A 51 330 51 HOH HOH . E 5 HOH A 52 331 52 HOH HOH . E 5 HOH A 53 332 53 HOH HOH . E 5 HOH A 54 333 54 HOH HOH . E 5 HOH A 55 334 55 HOH HOH . E 5 HOH A 56 335 56 HOH HOH . E 5 HOH A 57 336 57 HOH HOH . E 5 HOH A 58 337 58 HOH HOH . E 5 HOH A 59 338 59 HOH HOH . E 5 HOH A 60 339 60 HOH HOH . E 5 HOH A 61 340 61 HOH HOH . E 5 HOH A 62 341 62 HOH HOH . E 5 HOH A 63 342 63 HOH HOH . E 5 HOH A 64 343 64 HOH HOH . E 5 HOH A 65 344 65 HOH HOH . E 5 HOH A 66 345 66 HOH HOH . E 5 HOH A 67 346 67 HOH HOH . E 5 HOH A 68 347 68 HOH HOH . E 5 HOH A 69 348 69 HOH HOH . E 5 HOH A 70 349 70 HOH HOH . E 5 HOH A 71 350 71 HOH HOH . E 5 HOH A 72 351 72 HOH HOH . E 5 HOH A 73 352 73 HOH HOH . E 5 HOH A 74 353 74 HOH HOH . E 5 HOH A 75 354 75 HOH HOH . E 5 HOH A 76 355 76 HOH HOH . E 5 HOH A 77 356 77 HOH HOH . E 5 HOH A 78 357 78 HOH HOH . E 5 HOH A 79 358 79 HOH HOH . E 5 HOH A 80 359 80 HOH HOH . E 5 HOH A 81 360 81 HOH HOH . E 5 HOH A 82 361 82 HOH HOH . E 5 HOH A 83 362 83 HOH HOH . E 5 HOH A 84 363 84 HOH HOH . E 5 HOH A 85 364 85 HOH HOH . E 5 HOH A 86 365 86 HOH HOH . E 5 HOH A 87 366 87 HOH HOH . E 5 HOH A 88 367 88 HOH HOH . E 5 HOH A 89 368 89 HOH HOH . E 5 HOH A 90 369 90 HOH HOH . E 5 HOH A 91 370 91 HOH HOH . E 5 HOH A 92 371 92 HOH HOH . E 5 HOH A 93 372 93 HOH HOH . E 5 HOH A 94 373 94 HOH HOH . E 5 HOH A 95 374 95 HOH HOH . E 5 HOH A 96 375 96 HOH HOH . E 5 HOH A 97 376 97 HOH HOH . E 5 HOH A 98 377 98 HOH HOH . E 5 HOH A 99 378 99 HOH HOH . E 5 HOH A 100 379 100 HOH HOH . E 5 HOH A 101 380 101 HOH HOH . E 5 HOH A 102 381 102 HOH HOH . E 5 HOH A 103 382 103 HOH HOH . E 5 HOH A 104 383 104 HOH HOH . E 5 HOH A 105 384 105 HOH HOH . E 5 HOH A 106 385 106 HOH HOH . E 5 HOH A 107 386 107 HOH HOH . E 5 HOH A 108 387 108 HOH HOH . E 5 HOH A 109 388 109 HOH HOH . E 5 HOH A 110 389 110 HOH HOH . E 5 HOH A 111 390 111 HOH HOH . E 5 HOH A 112 391 112 HOH HOH . E 5 HOH A 113 392 113 HOH HOH . E 5 HOH A 114 393 114 HOH HOH . E 5 HOH A 115 394 115 HOH HOH . E 5 HOH A 116 395 116 HOH HOH . E 5 HOH A 117 396 117 HOH HOH . E 5 HOH A 118 397 118 HOH HOH . E 5 HOH A 119 398 119 HOH HOH . E 5 HOH A 120 399 120 HOH HOH . E 5 HOH A 121 400 121 HOH HOH . E 5 HOH A 122 401 122 HOH HOH . E 5 HOH A 123 402 123 HOH HOH . E 5 HOH A 124 403 124 HOH HOH . E 5 HOH A 125 404 125 HOH HOH . E 5 HOH A 126 405 126 HOH HOH . E 5 HOH A 127 406 127 HOH HOH . E 5 HOH A 128 407 128 HOH HOH . E 5 HOH A 129 408 129 HOH HOH . E 5 HOH A 130 409 130 HOH HOH . E 5 HOH A 131 410 131 HOH HOH . E 5 HOH A 132 411 132 HOH HOH . E 5 HOH A 133 412 133 HOH HOH . E 5 HOH A 134 413 134 HOH HOH . E 5 HOH A 135 414 135 HOH HOH . E 5 HOH A 136 415 136 HOH HOH . E 5 HOH A 137 416 137 HOH HOH . E 5 HOH A 138 417 138 HOH HOH . E 5 HOH A 139 418 139 HOH HOH . E 5 HOH A 140 419 140 HOH HOH . E 5 HOH A 141 420 141 HOH HOH . E 5 HOH A 142 421 142 HOH HOH . E 5 HOH A 143 422 143 HOH HOH . E 5 HOH A 144 423 144 HOH HOH . E 5 HOH A 145 424 145 HOH HOH . E 5 HOH A 146 425 146 HOH HOH . E 5 HOH A 147 426 147 HOH HOH . E 5 HOH A 148 427 148 HOH HOH . E 5 HOH A 149 428 149 HOH HOH . E 5 HOH A 150 429 150 HOH HOH . E 5 HOH A 151 430 151 HOH HOH . E 5 HOH A 152 431 152 HOH HOH . E 5 HOH A 153 432 153 HOH HOH . E 5 HOH A 154 433 154 HOH HOH . E 5 HOH A 155 434 155 HOH HOH . E 5 HOH A 156 435 156 HOH HOH . E 5 HOH A 157 436 157 HOH HOH . E 5 HOH A 158 437 158 HOH HOH . E 5 HOH A 159 438 159 HOH HOH . E 5 HOH A 160 439 160 HOH HOH . E 5 HOH A 161 440 161 HOH HOH . E 5 HOH A 162 441 162 HOH HOH . E 5 HOH A 163 442 163 HOH HOH . E 5 HOH A 164 443 164 HOH HOH . E 5 HOH A 165 444 165 HOH HOH . E 5 HOH A 166 445 166 HOH HOH . E 5 HOH A 167 446 167 HOH HOH . E 5 HOH A 168 447 168 HOH HOH . E 5 HOH A 169 448 169 HOH HOH . E 5 HOH A 170 449 170 HOH HOH . E 5 HOH A 171 450 171 HOH HOH . E 5 HOH A 172 451 172 HOH HOH . E 5 HOH A 173 452 173 HOH HOH . E 5 HOH A 174 453 174 HOH HOH . E 5 HOH A 175 454 175 HOH HOH . E 5 HOH A 176 455 176 HOH HOH . E 5 HOH A 177 456 177 HOH HOH . E 5 HOH A 178 457 178 HOH HOH . E 5 HOH A 179 458 179 HOH HOH . E 5 HOH A 180 459 180 HOH HOH . E 5 HOH A 181 460 181 HOH HOH . E 5 HOH A 182 461 182 HOH HOH . E 5 HOH A 183 462 183 HOH HOH . E 5 HOH A 184 463 184 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . C 3 -55.867 -23.707 -23.425 1 30.12 ? P AMP 278 A 1 HETATM 2 O O1P AMP . . . C 3 -55.709 -25.241 -23.338 1 30.54 ? O1P AMP 278 A 1 HETATM 3 O O2P AMP . . . C 3 -57.307 -23.383 -23.316 1 32.33 ? O2P AMP 278 A 1 HETATM 4 O O3P AMP . . . C 3 -54.941 -23.039 -22.469 1 29.4 ? O3P AMP 278 A 1 HETATM 5 O O5' AMP . . . C 3 -55.307 -23.355 -24.822 1 29.77 ? O5' AMP 278 A 1 HETATM 6 C C5' AMP . . . C 3 -56.014 -23.757 -25.976 1 29.91 ? C5' AMP 278 A 1 HETATM 7 C C4' AMP . . . C 3 -55.079 -23.71 -27.181 1 30.37 ? C4' AMP 278 A 1 HETATM 8 O O4' AMP . . . C 3 -55.729 -24.224 -28.349 1 29.1 ? O4' AMP 278 A 1 HETATM 9 C C3' AMP . . . C 3 -54.658 -22.315 -27.601 1 30.4 ? C3' AMP 278 A 1 HETATM 10 O O3' AMP . . . C 3 -53.358 -22.324 -28.21 1 29.57 ? O3' AMP 278 A 1 HETATM 11 C C2' AMP . . . C 3 -55.741 -21.9 -28.578 1 29.91 ? C2' AMP 278 A 1 HETATM 12 O O2' AMP . . . C 3 -55.383 -20.751 -29.366 1 29.95 ? O2' AMP 278 A 1 HETATM 13 C C1' AMP . . . C 3 -55.921 -23.194 -29.354 1 30.1 ? C1' AMP 278 A 1 HETATM 14 N N9 AMP . . . C 3 -57.265 -23.344 -29.884 1 29.46 ? N9 AMP 278 A 1 HETATM 15 C C8 AMP . . . C 3 -58.383 -23.816 -29.267 1 31.8 ? C8 AMP 278 A 1 HETATM 16 N N7 AMP . . . C 3 -59.449 -23.851 -30.116 1 31.74 ? N7 AMP 278 A 1 HETATM 17 C C5 AMP . . . C 3 -58.997 -23.389 -31.299 1 30.64 ? C5 AMP 278 A 1 HETATM 18 C C6 AMP . . . C 3 -59.589 -23.147 -32.63 1 32.78 ? C6 AMP 278 A 1 HETATM 19 N N6 AMP . . . C 3 -60.889 -23.424 -32.741 1 30.92 ? N6 AMP 278 A 1 HETATM 20 N N1 AMP . . . C 3 -58.783 -22.672 -33.612 1 31.06 ? N1 AMP 278 A 1 HETATM 21 C C2 AMP . . . C 3 -57.475 -22.422 -33.408 1 33.47 ? C2 AMP 278 A 1 HETATM 22 N N3 AMP . . . C 3 -56.868 -22.61 -32.2 1 29.26 ? N3 AMP 278 A 1 HETATM 23 C C4 AMP . . . C 3 -57.573 -23.091 -31.17 1 31.43 ? C4 AMP 278 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 226 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 23 #