data_3RQ5 # _model_server_result.job_id SSe1fiW7wWo9bpfDvdBBKg _model_server_result.datetime_utc '2024-11-27 17:08:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rq5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":278}' # _entry.id 3RQ5 # _exptl.entry_id 3RQ5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3RQ5 _cell.length_a 91.765 _cell.length_b 91.765 _cell.length_c 169.498 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RQ5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -91.765 -91.765 0 3 'crystal symmetry operation' 3_455 -y-1,x,z 0 -1 0 1 0 0 0 0 1 -91.765 0 0 4 'crystal symmetry operation' 4_545 y,-x-1,z 0 1 0 -1 0 0 0 0 1 0 -91.765 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 215 n n C1 C2 GOL sing 216 n n C1 H11 GOL sing 217 n n C1 H12 GOL sing 218 n n O1 HO1 GOL sing 219 n n C2 O2 GOL sing 220 n n C2 C3 GOL sing 221 n n C2 H2 GOL sing 222 n n O2 HO2 GOL sing 223 n n C3 O3 GOL sing 224 n n C3 H31 GOL sing 225 n n C3 H32 GOL sing 226 n n O3 HO3 GOL sing 227 n n # _atom_sites.entry_id 3RQ5 _atom_sites.fract_transf_matrix[1][1] 0.010897 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010897 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0059 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 COA A 1 277 1 COA COA . C 3 GOL A 1 278 2 GOL GOL . D 3 GOL A 1 279 3 GOL GOL . E 4 HOH A 1 280 1 HOH HOH . E 4 HOH A 2 281 2 HOH HOH . E 4 HOH A 3 282 3 HOH HOH . E 4 HOH A 4 283 4 HOH HOH . E 4 HOH A 5 284 5 HOH HOH . E 4 HOH A 6 285 6 HOH HOH . E 4 HOH A 7 286 7 HOH HOH . E 4 HOH A 8 287 8 HOH HOH . E 4 HOH A 9 288 9 HOH HOH . E 4 HOH A 10 289 10 HOH HOH . E 4 HOH A 11 290 11 HOH HOH . E 4 HOH A 12 291 12 HOH HOH . E 4 HOH A 13 292 13 HOH HOH . E 4 HOH A 14 293 14 HOH HOH . E 4 HOH A 15 294 15 HOH HOH . E 4 HOH A 16 295 16 HOH HOH . E 4 HOH A 17 296 17 HOH HOH . E 4 HOH A 18 297 18 HOH HOH . E 4 HOH A 19 298 19 HOH HOH . E 4 HOH A 20 299 20 HOH HOH . E 4 HOH A 21 300 21 HOH HOH . E 4 HOH A 22 301 22 HOH HOH . E 4 HOH A 23 302 23 HOH HOH . E 4 HOH A 24 303 24 HOH HOH . E 4 HOH A 25 304 25 HOH HOH . E 4 HOH A 26 305 26 HOH HOH . E 4 HOH A 27 306 27 HOH HOH . E 4 HOH A 28 307 28 HOH HOH . E 4 HOH A 29 308 29 HOH HOH . E 4 HOH A 30 309 30 HOH HOH . E 4 HOH A 31 310 31 HOH HOH . E 4 HOH A 32 311 32 HOH HOH . E 4 HOH A 33 312 33 HOH HOH . E 4 HOH A 34 313 34 HOH HOH . E 4 HOH A 35 314 35 HOH HOH . E 4 HOH A 36 315 36 HOH HOH . E 4 HOH A 37 316 37 HOH HOH . E 4 HOH A 38 317 38 HOH HOH . E 4 HOH A 39 318 39 HOH HOH . E 4 HOH A 40 319 40 HOH HOH . E 4 HOH A 41 320 41 HOH HOH . E 4 HOH A 42 321 42 HOH HOH . E 4 HOH A 43 322 43 HOH HOH . E 4 HOH A 44 323 44 HOH HOH . E 4 HOH A 45 324 45 HOH HOH . E 4 HOH A 46 325 46 HOH HOH . E 4 HOH A 47 326 47 HOH HOH . E 4 HOH A 48 327 48 HOH HOH . E 4 HOH A 49 328 49 HOH HOH . E 4 HOH A 50 329 50 HOH HOH . E 4 HOH A 51 330 51 HOH HOH . E 4 HOH A 52 331 52 HOH HOH . E 4 HOH A 53 332 53 HOH HOH . E 4 HOH A 54 333 54 HOH HOH . E 4 HOH A 55 334 55 HOH HOH . E 4 HOH A 56 335 56 HOH HOH . E 4 HOH A 57 336 57 HOH HOH . E 4 HOH A 58 337 58 HOH HOH . E 4 HOH A 59 338 59 HOH HOH . E 4 HOH A 60 339 60 HOH HOH . E 4 HOH A 61 340 61 HOH HOH . E 4 HOH A 62 341 62 HOH HOH . E 4 HOH A 63 342 63 HOH HOH . E 4 HOH A 64 343 64 HOH HOH . E 4 HOH A 65 344 65 HOH HOH . E 4 HOH A 66 345 66 HOH HOH . E 4 HOH A 67 346 67 HOH HOH . E 4 HOH A 68 347 68 HOH HOH . E 4 HOH A 69 348 69 HOH HOH . E 4 HOH A 70 349 70 HOH HOH . E 4 HOH A 71 350 71 HOH HOH . E 4 HOH A 72 351 72 HOH HOH . E 4 HOH A 73 352 73 HOH HOH . E 4 HOH A 74 353 74 HOH HOH . E 4 HOH A 75 354 75 HOH HOH . E 4 HOH A 76 355 76 HOH HOH . E 4 HOH A 77 356 77 HOH HOH . E 4 HOH A 78 357 78 HOH HOH . E 4 HOH A 79 358 79 HOH HOH . E 4 HOH A 80 359 80 HOH HOH . E 4 HOH A 81 360 81 HOH HOH . E 4 HOH A 82 361 82 HOH HOH . E 4 HOH A 83 362 83 HOH HOH . E 4 HOH A 84 363 84 HOH HOH . E 4 HOH A 85 364 85 HOH HOH . E 4 HOH A 86 365 86 HOH HOH . E 4 HOH A 87 366 87 HOH HOH . E 4 HOH A 88 367 88 HOH HOH . E 4 HOH A 89 368 89 HOH HOH . E 4 HOH A 90 369 90 HOH HOH . E 4 HOH A 91 370 91 HOH HOH . E 4 HOH A 92 371 92 HOH HOH . E 4 HOH A 93 372 93 HOH HOH . E 4 HOH A 94 373 94 HOH HOH . E 4 HOH A 95 374 95 HOH HOH . E 4 HOH A 96 375 96 HOH HOH . E 4 HOH A 97 376 97 HOH HOH . E 4 HOH A 98 377 98 HOH HOH . E 4 HOH A 99 378 99 HOH HOH . E 4 HOH A 100 379 100 HOH HOH . E 4 HOH A 101 380 101 HOH HOH . E 4 HOH A 102 381 102 HOH HOH . E 4 HOH A 103 382 103 HOH HOH . E 4 HOH A 104 383 104 HOH HOH . E 4 HOH A 105 384 105 HOH HOH . E 4 HOH A 106 385 106 HOH HOH . E 4 HOH A 107 386 107 HOH HOH . E 4 HOH A 108 387 108 HOH HOH . E 4 HOH A 109 388 109 HOH HOH . E 4 HOH A 110 389 110 HOH HOH . E 4 HOH A 111 390 111 HOH HOH . E 4 HOH A 112 391 112 HOH HOH . E 4 HOH A 113 392 113 HOH HOH . E 4 HOH A 114 393 114 HOH HOH . E 4 HOH A 115 394 115 HOH HOH . E 4 HOH A 116 395 116 HOH HOH . E 4 HOH A 117 396 117 HOH HOH . E 4 HOH A 118 397 118 HOH HOH . E 4 HOH A 119 398 119 HOH HOH . E 4 HOH A 120 399 120 HOH HOH . E 4 HOH A 121 400 121 HOH HOH . E 4 HOH A 122 401 122 HOH HOH . E 4 HOH A 123 402 123 HOH HOH . E 4 HOH A 124 403 124 HOH HOH . E 4 HOH A 125 404 125 HOH HOH . E 4 HOH A 126 405 126 HOH HOH . E 4 HOH A 127 406 127 HOH HOH . E 4 HOH A 128 407 128 HOH HOH . E 4 HOH A 129 408 129 HOH HOH . E 4 HOH A 130 409 130 HOH HOH . E 4 HOH A 131 410 131 HOH HOH . E 4 HOH A 132 411 132 HOH HOH . E 4 HOH A 133 412 133 HOH HOH . E 4 HOH A 134 413 134 HOH HOH . E 4 HOH A 135 414 135 HOH HOH . E 4 HOH A 136 415 136 HOH HOH . E 4 HOH A 137 416 137 HOH HOH . E 4 HOH A 138 417 138 HOH HOH . E 4 HOH A 139 418 139 HOH HOH . E 4 HOH A 140 419 140 HOH HOH . E 4 HOH A 141 420 141 HOH HOH . E 4 HOH A 142 421 142 HOH HOH . E 4 HOH A 143 422 143 HOH HOH . E 4 HOH A 144 423 144 HOH HOH . E 4 HOH A 145 424 145 HOH HOH . E 4 HOH A 146 425 146 HOH HOH . E 4 HOH A 147 426 147 HOH HOH . E 4 HOH A 148 427 148 HOH HOH . E 4 HOH A 149 428 149 HOH HOH . E 4 HOH A 150 429 150 HOH HOH . E 4 HOH A 151 430 151 HOH HOH . E 4 HOH A 152 431 152 HOH HOH . E 4 HOH A 153 432 153 HOH HOH . E 4 HOH A 154 433 154 HOH HOH . E 4 HOH A 155 434 155 HOH HOH . E 4 HOH A 156 435 156 HOH HOH . E 4 HOH A 157 436 157 HOH HOH . E 4 HOH A 158 437 158 HOH HOH . E 4 HOH A 159 438 159 HOH HOH . E 4 HOH A 160 439 160 HOH HOH . E 4 HOH A 161 440 161 HOH HOH . E 4 HOH A 162 441 162 HOH HOH . E 4 HOH A 163 442 163 HOH HOH . E 4 HOH A 164 443 164 HOH HOH . E 4 HOH A 165 444 165 HOH HOH . E 4 HOH A 166 445 166 HOH HOH . E 4 HOH A 167 446 167 HOH HOH . E 4 HOH A 168 447 168 HOH HOH . E 4 HOH A 169 448 169 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 -49.673 -37.232 -9.021 1 44.75 ? C1 GOL 278 A 1 HETATM 2 O O1 GOL . . . C 3 -50.871 -36.93 -9.666 1 39.83 ? O1 GOL 278 A 1 HETATM 3 C C2 GOL . . . C 3 -50 -38.279 -7.972 1 45.92 ? C2 GOL 278 A 1 HETATM 4 O O2 GOL . . . C 3 -50.858 -37.754 -6.971 1 46.27 ? O2 GOL 278 A 1 HETATM 5 C C3 GOL . . . C 3 -50.641 -39.432 -8.723 1 45.38 ? C3 GOL 278 A 1 HETATM 6 O O3 GOL . . . C 3 -50.331 -40.563 -7.979 1 47.86 ? O3 GOL 278 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #