data_3RQI # _model_server_result.job_id 6e6Zdfc0B7nF4KZxt1gdrg _model_server_result.datetime_utc '2024-11-26 02:29:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rqi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":185}' # _entry.id 3RQI # _exptl.entry_id 3RQI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3RQI _cell.length_a 55.24 _cell.length_b 55.24 _cell.length_c 95.42 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RQI _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 31.806667 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C VAL 57 A VAL 53 1_555 A N PHD 58 A PHD 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale2 A C PHD 58 A PHD 54 1_555 A N LEU 59 A LEU 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? metalc ? metalc1 A OD1 ASP 15 A ASP 11 1_555 B CA CA . A CA 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc2 A OP2 PHD 58 A PHD 54 1_555 B CA CA . A CA 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc3 A OD2 PHD 58 A PHD 54 1_555 B CA CA . A CA 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc4 A O HIS 60 A HIS 56 1_555 B CA CA . A CA 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc5 B CA CA . A CA 181 1_555 C O7 CIT . A CIT 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc6 B CA CA . A CA 181 1_555 C O6 CIT . A CIT 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc7 B CA CA . A CA 181 1_555 C O1 CIT . A CIT 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? metalc ? metalc8 B CA CA . A CA 181 1_555 G O HOH . A HOH 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 149 n n C1 C2 GOL sing 150 n n C1 H11 GOL sing 151 n n C1 H12 GOL sing 152 n n O1 HO1 GOL sing 153 n n C2 O2 GOL sing 154 n n C2 C3 GOL sing 155 n n C2 H2 GOL sing 156 n n O2 HO2 GOL sing 157 n n C3 O3 GOL sing 158 n n C3 H31 GOL sing 159 n n C3 H32 GOL sing 160 n n O3 HO3 GOL sing 161 n n # _atom_sites.entry_id 3RQI _atom_sites.fract_transf_matrix[1][1] 0.018103 _atom_sites.fract_transf_matrix[1][2] 0.010452 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020903 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01048 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 181 1 CA CA . C 3 CIT A 1 182 2 CIT CIT . D 4 SO4 A 1 183 3 SO4 SO4 . E 4 SO4 A 1 184 4 SO4 SO4 . F 5 GOL A 1 185 5 GOL GOL . G 6 HOH A 1 186 1 HOH HOH . G 6 HOH A 2 187 2 HOH HOH . G 6 HOH A 3 188 3 HOH HOH . G 6 HOH A 4 189 4 HOH HOH . G 6 HOH A 5 190 5 HOH HOH . G 6 HOH A 6 191 6 HOH HOH . G 6 HOH A 7 192 7 HOH HOH . G 6 HOH A 8 193 8 HOH HOH . G 6 HOH A 9 194 9 HOH HOH . G 6 HOH A 10 195 10 HOH HOH . G 6 HOH A 11 196 11 HOH HOH . G 6 HOH A 12 197 12 HOH HOH . G 6 HOH A 13 198 13 HOH HOH . G 6 HOH A 14 199 14 HOH HOH . G 6 HOH A 15 200 15 HOH HOH . G 6 HOH A 16 201 16 HOH HOH . G 6 HOH A 17 202 17 HOH HOH . G 6 HOH A 18 203 18 HOH HOH . G 6 HOH A 19 204 19 HOH HOH . G 6 HOH A 20 205 20 HOH HOH . G 6 HOH A 21 206 21 HOH HOH . G 6 HOH A 22 207 22 HOH HOH . G 6 HOH A 23 208 23 HOH HOH . G 6 HOH A 24 209 24 HOH HOH . G 6 HOH A 25 210 25 HOH HOH . G 6 HOH A 26 211 26 HOH HOH . G 6 HOH A 27 212 27 HOH HOH . G 6 HOH A 28 213 28 HOH HOH . G 6 HOH A 29 214 29 HOH HOH . G 6 HOH A 30 215 30 HOH HOH . G 6 HOH A 31 216 31 HOH HOH . G 6 HOH A 32 217 32 HOH HOH . G 6 HOH A 33 218 33 HOH HOH . G 6 HOH A 34 219 34 HOH HOH . G 6 HOH A 35 220 35 HOH HOH . G 6 HOH A 36 221 36 HOH HOH . G 6 HOH A 37 222 37 HOH HOH . G 6 HOH A 38 223 38 HOH HOH . G 6 HOH A 39 224 39 HOH HOH . G 6 HOH A 40 225 40 HOH HOH . G 6 HOH A 41 226 41 HOH HOH . G 6 HOH A 42 227 42 HOH HOH . G 6 HOH A 43 228 43 HOH HOH . G 6 HOH A 44 229 44 HOH HOH . G 6 HOH A 45 230 45 HOH HOH . G 6 HOH A 46 231 46 HOH HOH . G 6 HOH A 47 232 47 HOH HOH . G 6 HOH A 48 233 48 HOH HOH . G 6 HOH A 49 234 49 HOH HOH . G 6 HOH A 50 235 50 HOH HOH . G 6 HOH A 51 236 51 HOH HOH . G 6 HOH A 52 237 52 HOH HOH . G 6 HOH A 53 238 53 HOH HOH . G 6 HOH A 54 239 54 HOH HOH . G 6 HOH A 55 240 55 HOH HOH . G 6 HOH A 56 241 56 HOH HOH . G 6 HOH A 57 242 57 HOH HOH . G 6 HOH A 58 243 58 HOH HOH . G 6 HOH A 59 244 59 HOH HOH . G 6 HOH A 60 245 60 HOH HOH . G 6 HOH A 61 246 61 HOH HOH . G 6 HOH A 62 247 62 HOH HOH . G 6 HOH A 63 248 63 HOH HOH . G 6 HOH A 64 249 64 HOH HOH . G 6 HOH A 65 250 65 HOH HOH . G 6 HOH A 66 251 66 HOH HOH . G 6 HOH A 67 252 67 HOH HOH . G 6 HOH A 68 253 68 HOH HOH . G 6 HOH A 69 254 69 HOH HOH . G 6 HOH A 70 255 70 HOH HOH . G 6 HOH A 71 256 71 HOH HOH . G 6 HOH A 72 257 72 HOH HOH . G 6 HOH A 73 258 73 HOH HOH . G 6 HOH A 74 259 74 HOH HOH . G 6 HOH A 75 260 75 HOH HOH . G 6 HOH A 76 261 76 HOH HOH . G 6 HOH A 77 262 77 HOH HOH . G 6 HOH A 78 263 78 HOH HOH . G 6 HOH A 79 264 79 HOH HOH . G 6 HOH A 80 265 80 HOH HOH . G 6 HOH A 81 266 81 HOH HOH . G 6 HOH A 82 267 82 HOH HOH . G 6 HOH A 83 268 83 HOH HOH . G 6 HOH A 84 269 84 HOH HOH . G 6 HOH A 85 270 85 HOH HOH . G 6 HOH A 86 271 86 HOH HOH . G 6 HOH A 87 272 87 HOH HOH . G 6 HOH A 88 273 88 HOH HOH . G 6 HOH A 89 274 89 HOH HOH . G 6 HOH A 90 275 90 HOH HOH . G 6 HOH A 91 276 91 HOH HOH . G 6 HOH A 92 277 92 HOH HOH . G 6 HOH A 93 278 93 HOH HOH . G 6 HOH A 94 279 94 HOH HOH . G 6 HOH A 95 280 95 HOH HOH . G 6 HOH A 96 281 96 HOH HOH . G 6 HOH A 97 282 97 HOH HOH . G 6 HOH A 98 283 98 HOH HOH . G 6 HOH A 99 284 99 HOH HOH . G 6 HOH A 100 285 100 HOH HOH . G 6 HOH A 101 286 101 HOH HOH . G 6 HOH A 102 287 102 HOH HOH . G 6 HOH A 103 288 103 HOH HOH . G 6 HOH A 104 289 104 HOH HOH . G 6 HOH A 105 290 105 HOH HOH . G 6 HOH A 106 291 106 HOH HOH . G 6 HOH A 107 292 107 HOH HOH . G 6 HOH A 108 293 108 HOH HOH . G 6 HOH A 109 294 109 HOH HOH . G 6 HOH A 110 295 110 HOH HOH . G 6 HOH A 111 296 111 HOH HOH . G 6 HOH A 112 297 112 HOH HOH . G 6 HOH A 113 298 113 HOH HOH . G 6 HOH A 114 299 114 HOH HOH . G 6 HOH A 115 300 115 HOH HOH . G 6 HOH A 116 301 116 HOH HOH . G 6 HOH A 117 302 117 HOH HOH . G 6 HOH A 118 303 118 HOH HOH . G 6 HOH A 119 304 119 HOH HOH . G 6 HOH A 120 305 120 HOH HOH . G 6 HOH A 121 306 121 HOH HOH . G 6 HOH A 122 307 122 HOH HOH . G 6 HOH A 123 308 123 HOH HOH . G 6 HOH A 124 309 124 HOH HOH . G 6 HOH A 125 310 125 HOH HOH . G 6 HOH A 126 311 126 HOH HOH . G 6 HOH A 127 312 127 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 5 2.799 12.792 14.09 1 38.43 ? C1 GOL 185 A 1 HETATM 2 O O1 GOL . . . F 5 2.225 11.552 14.493 1 41.19 ? O1 GOL 185 A 1 HETATM 3 C C2 GOL . . . F 5 3.884 12.669 13.008 1 38.97 ? C2 GOL 185 A 1 HETATM 4 O O2 GOL . . . F 5 5.166 13.108 13.458 1 35.71 ? O2 GOL 185 A 1 HETATM 5 C C3 GOL . . . F 5 3.926 11.281 12.376 1 38.97 ? C3 GOL 185 A 1 HETATM 6 O O3 GOL . . . F 5 4.862 10.473 13.047 1 37.17 ? O3 GOL 185 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #