data_3RQU # _model_server_result.job_id ENh66HE0zKg9iPMGy79o8g _model_server_result.datetime_utc '2024-11-05 06:38:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rqu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":325}' # _entry.id 3RQU # _exptl.entry_id 3RQU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 21 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.53 _cell.angle_gamma 90 _cell.entry_id 3RQU _cell.length_a 105.289 _cell.length_b 266.97 _cell.length_c 111.074 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RQU _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA pentameric 5 author_and_software_defined_assembly 1 PISA pentameric 5 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,MA,NA,OA,PA,QA 1 1 F,G,H,I,J,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,RA,SA,TA,UA,VA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 L N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 T N N ? 3 V N N ? 3 W N N ? 3 X N N ? 3 Y N N ? 3 Z N N ? 3 AA N N ? 3 DA N N ? 3 EA N N ? 3 GA N N ? 3 HA N N ? 3 IA N N ? 3 JA N N ? 3 KA N N ? 3 LA N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3RQU _atom_sites.fract_transf_matrix[1][1] 0.009498 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003746 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009441 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 2 MES A 1 323 1 MES MES . L 3 GOL A 1 324 21 GOL GOL . M 2 MES B 1 323 4 MES MES . N 3 GOL B 1 324 4 GOL GOL . O 3 GOL B 1 325 7 GOL GOL . P 3 GOL B 1 326 9 GOL GOL . Q 3 GOL B 1 327 10 GOL GOL . R 3 GOL B 1 328 17 GOL GOL . S 2 MES C 1 323 2 MES MES . T 3 GOL C 1 324 18 GOL GOL . U 2 MES D 1 323 3 MES MES . V 3 GOL D 1 324 5 GOL GOL . W 3 GOL D 1 325 6 GOL GOL . X 3 GOL D 1 326 19 GOL GOL . Y 3 GOL E 1 323 1 GOL GOL . Z 3 GOL E 1 324 20 GOL GOL . AA 3 GOL F 1 323 13 GOL GOL . BA 2 MES G 1 323 5 MES MES . CA 2 MES G 1 324 6 MES MES . DA 3 GOL G 1 325 14 GOL GOL . EA 3 GOL H 1 323 15 GOL GOL . FA 2 MES I 1 323 7 MES MES . GA 3 GOL I 1 324 3 GOL GOL . HA 3 GOL I 1 325 8 GOL GOL . IA 3 GOL I 1 326 16 GOL GOL . JA 3 GOL J 1 323 2 GOL GOL . KA 3 GOL J 1 324 11 GOL GOL . LA 3 GOL J 1 325 12 GOL GOL . MA 4 HOH A 1 325 1 HOH HOH . MA 4 HOH A 2 326 5 HOH HOH . MA 4 HOH A 3 327 9 HOH HOH . MA 4 HOH A 4 328 30 HOH HOH . MA 4 HOH A 5 329 49 HOH HOH . NA 4 HOH B 1 329 2 HOH HOH . NA 4 HOH B 2 330 10 HOH HOH . NA 4 HOH B 3 331 27 HOH HOH . NA 4 HOH B 4 332 28 HOH HOH . NA 4 HOH B 5 333 31 HOH HOH . NA 4 HOH B 6 334 41 HOH HOH . OA 4 HOH C 1 325 11 HOH HOH . OA 4 HOH C 2 326 12 HOH HOH . OA 4 HOH C 3 327 32 HOH HOH . OA 4 HOH C 4 328 47 HOH HOH . PA 4 HOH D 1 327 3 HOH HOH . PA 4 HOH D 2 328 4 HOH HOH . PA 4 HOH D 3 329 6 HOH HOH . PA 4 HOH D 4 330 7 HOH HOH . PA 4 HOH D 5 331 33 HOH HOH . PA 4 HOH D 6 332 42 HOH HOH . QA 4 HOH E 1 325 8 HOH HOH . QA 4 HOH E 2 326 29 HOH HOH . QA 4 HOH E 3 327 34 HOH HOH . QA 4 HOH E 4 328 40 HOH HOH . QA 4 HOH E 5 329 48 HOH HOH . RA 4 HOH F 1 324 23 HOH HOH . RA 4 HOH F 2 325 35 HOH HOH . SA 4 HOH G 1 326 14 HOH HOH . SA 4 HOH G 2 327 16 HOH HOH . SA 4 HOH G 3 328 24 HOH HOH . SA 4 HOH G 4 329 25 HOH HOH . SA 4 HOH G 5 330 26 HOH HOH . SA 4 HOH G 6 331 36 HOH HOH . SA 4 HOH G 7 332 43 HOH HOH . TA 4 HOH H 1 324 15 HOH HOH . TA 4 HOH H 2 325 18 HOH HOH . TA 4 HOH H 3 326 19 HOH HOH . TA 4 HOH H 4 327 37 HOH HOH . TA 4 HOH H 5 328 44 HOH HOH . UA 4 HOH I 1 327 17 HOH HOH . UA 4 HOH I 2 328 20 HOH HOH . UA 4 HOH I 3 329 38 HOH HOH . UA 4 HOH I 4 330 45 HOH HOH . VA 4 HOH J 1 326 13 HOH HOH . VA 4 HOH J 2 327 21 HOH HOH . VA 4 HOH J 3 328 22 HOH HOH . VA 4 HOH J 4 329 39 HOH HOH . VA 4 HOH J 5 330 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . O 3 -105.952 -40.159 -33.465 1 130.91 ? C1 GOL 325 B 1 HETATM 2 O O1 GOL . . . O 3 -105.86 -40.766 -32.215 1 84.25 ? O1 GOL 325 B 1 HETATM 3 C C2 GOL . . . O 3 -105.634 -41.102 -34.587 1 116.79 ? C2 GOL 325 B 1 HETATM 4 O O2 GOL . . . O 3 -106.392 -42.253 -34.488 1 100.74 ? O2 GOL 325 B 1 HETATM 5 C C3 GOL . . . O 3 -105.965 -40.426 -35.876 1 105.97 ? C3 GOL 325 B 1 HETATM 6 O O3 GOL . . . O 3 -107.278 -39.976 -35.819 1 113.05 ? O3 GOL 325 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #