data_3RQU
#
_model_server_result.job_id            Y3c9X7JCpRQqFJMEzS3wlQ 
_model_server_result.datetime_utc      '2024-11-27 05:57:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3rqu 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"W","auth_seq_id":325}' 
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_entry.id    3RQU 
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_exptl.entry_id    3RQU 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    21 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
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_cell.angle_alpha         90 
_cell.angle_beta          107.53 
_cell.angle_gamma         90 
_cell.entry_id            3RQU 
_cell.length_a            105.289 
_cell.length_b            266.97 
_cell.length_c            111.074 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 3RQU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA pentameric 5 author_and_software_defined_assembly 1 
PISA pentameric 5 author_and_software_defined_assembly 2 
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loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,MA,NA,OA,PA,QA 1 1 
F,G,H,I,J,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,RA,SA,TA,UA,VA 2 1 
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_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 L N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
? 3 Q N N 
? 3 R N N 
? 3 T N N 
? 3 V N N 
? 3 W N N 
? 3 X N N 
? 3 Y N N 
? 3 Z N N 
? 3 AA N N 
? 3 DA N N 
? 3 EA N N 
? 3 GA N N 
? 3 HA N N 
? 3 IA N N 
? 3 JA N N 
? 3 KA N N 
? 3 LA N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3RQU 
_atom_sites.fract_transf_matrix[1][1]    0.009498 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.003746 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009441 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
K 2 MES A 1 323 1 MES MES . 
L 3 GOL A 1 324 21 GOL GOL . 
M 2 MES B 1 323 4 MES MES . 
N 3 GOL B 1 324 4 GOL GOL . 
O 3 GOL B 1 325 7 GOL GOL . 
P 3 GOL B 1 326 9 GOL GOL . 
Q 3 GOL B 1 327 10 GOL GOL . 
R 3 GOL B 1 328 17 GOL GOL . 
S 2 MES C 1 323 2 MES MES . 
T 3 GOL C 1 324 18 GOL GOL . 
U 2 MES D 1 323 3 MES MES . 
V 3 GOL D 1 324 5 GOL GOL . 
W 3 GOL D 1 325 6 GOL GOL . 
X 3 GOL D 1 326 19 GOL GOL . 
Y 3 GOL E 1 323 1 GOL GOL . 
Z 3 GOL E 1 324 20 GOL GOL . 
AA 3 GOL F 1 323 13 GOL GOL . 
BA 2 MES G 1 323 5 MES MES . 
CA 2 MES G 1 324 6 MES MES . 
DA 3 GOL G 1 325 14 GOL GOL . 
EA 3 GOL H 1 323 15 GOL GOL . 
FA 2 MES I 1 323 7 MES MES . 
GA 3 GOL I 1 324 3 GOL GOL . 
HA 3 GOL I 1 325 8 GOL GOL . 
IA 3 GOL I 1 326 16 GOL GOL . 
JA 3 GOL J 1 323 2 GOL GOL . 
KA 3 GOL J 1 324 11 GOL GOL . 
LA 3 GOL J 1 325 12 GOL GOL . 
MA 4 HOH A 1 325 1 HOH HOH . 
MA 4 HOH A 2 326 5 HOH HOH . 
MA 4 HOH A 3 327 9 HOH HOH . 
MA 4 HOH A 4 328 30 HOH HOH . 
MA 4 HOH A 5 329 49 HOH HOH . 
NA 4 HOH B 1 329 2 HOH HOH . 
NA 4 HOH B 2 330 10 HOH HOH . 
NA 4 HOH B 3 331 27 HOH HOH . 
NA 4 HOH B 4 332 28 HOH HOH . 
NA 4 HOH B 5 333 31 HOH HOH . 
NA 4 HOH B 6 334 41 HOH HOH . 
OA 4 HOH C 1 325 11 HOH HOH . 
OA 4 HOH C 2 326 12 HOH HOH . 
OA 4 HOH C 3 327 32 HOH HOH . 
OA 4 HOH C 4 328 47 HOH HOH . 
PA 4 HOH D 1 327 3 HOH HOH . 
PA 4 HOH D 2 328 4 HOH HOH . 
PA 4 HOH D 3 329 6 HOH HOH . 
PA 4 HOH D 4 330 7 HOH HOH . 
PA 4 HOH D 5 331 33 HOH HOH . 
PA 4 HOH D 6 332 42 HOH HOH . 
QA 4 HOH E 1 325 8 HOH HOH . 
QA 4 HOH E 2 326 29 HOH HOH . 
QA 4 HOH E 3 327 34 HOH HOH . 
QA 4 HOH E 4 328 40 HOH HOH . 
QA 4 HOH E 5 329 48 HOH HOH . 
RA 4 HOH F 1 324 23 HOH HOH . 
RA 4 HOH F 2 325 35 HOH HOH . 
SA 4 HOH G 1 326 14 HOH HOH . 
SA 4 HOH G 2 327 16 HOH HOH . 
SA 4 HOH G 3 328 24 HOH HOH . 
SA 4 HOH G 4 329 25 HOH HOH . 
SA 4 HOH G 5 330 26 HOH HOH . 
SA 4 HOH G 6 331 36 HOH HOH . 
SA 4 HOH G 7 332 43 HOH HOH . 
TA 4 HOH H 1 324 15 HOH HOH . 
TA 4 HOH H 2 325 18 HOH HOH . 
TA 4 HOH H 3 326 19 HOH HOH . 
TA 4 HOH H 4 327 37 HOH HOH . 
TA 4 HOH H 5 328 44 HOH HOH . 
UA 4 HOH I 1 327 17 HOH HOH . 
UA 4 HOH I 2 328 20 HOH HOH . 
UA 4 HOH I 3 329 38 HOH HOH . 
UA 4 HOH I 4 330 45 HOH HOH . 
VA 4 HOH J 1 326 13 HOH HOH . 
VA 4 HOH J 2 327 21 HOH HOH . 
VA 4 HOH J 3 328 22 HOH HOH . 
VA 4 HOH J 4 329 39 HOH HOH . 
VA 4 HOH J 5 330 46 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . W 3 -101.858 -38.663 -58.366 1 92.43 ? C1 GOL 325 D 1 
HETATM 2 C C2 GOL . . . W 3 -100.892 -37.651 -57.819 1 128.19 ? C2 GOL 325 D 1 
HETATM 3 O O2 GOL . . . W 3 -101.505 -36.417 -57.628 1 81.96 ? O2 GOL 325 D 1 
HETATM 4 C C3 GOL . . . W 3 -99.728 -37.528 -58.759 1 115.39 ? C3 GOL 325 D 1 
HETATM 5 O O3 GOL . . . W 3 -98.572 -37.101 -58.112 1 96.87 ? O3 GOL 325 D 1 
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_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           258 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           5 
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