data_3RR1 # _model_server_result.job_id qV8BUo_vhFY6AQhpgdoOTQ _model_server_result.datetime_utc '2025-08-18 22:01:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rr1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":406}' # _entry.id 3RR1 # _exptl.entry_id 3RR1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 134.087 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-MALATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3RR1 _cell.length_a 118.011 _cell.length_b 118.011 _cell.length_c 114.57 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RR1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_645 -x+1,-y-1,z -1 0 0 0 -1 0 0 0 1 118.011 -118.011 0 3 'crystal symmetry operation' 3_545 -y,x-1,z 0 -1 0 1 0 0 0 0 1 0 -118.011 0 4 'crystal symmetry operation' 4_655 y+1,-x,z 0 1 0 -1 0 0 0 0 1 118.011 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H6 O5' _chem_comp.formula_weight 134.087 _chem_comp.id MLT _chem_comp.mon_nstd_flag . _chem_comp.name D-MALATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(2R)-2-HYDROXYBUTANEDIOIC ACID;2-HYDROXY-SUCCINIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 MLT doub 237 n n C1 O2 MLT sing 238 n n C1 C2 MLT sing 239 n n C2 O3 MLT sing 240 n n C2 C3 MLT sing 241 n n C2 H2 MLT sing 242 n n O3 HO3 MLT sing 243 n n C3 C4 MLT sing 244 n n C3 H31 MLT sing 245 n n C3 H32 MLT sing 246 n n C4 O4 MLT doub 247 n n C4 O5 MLT sing 248 n n O5 HO5 MLT sing 249 n n O2 H6 MLT sing 250 n n # _atom_sites.entry_id 3RR1 _atom_sites.fract_transf_matrix[1][1] 0.008474 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008474 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008728 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL A 1 405 1 CL CL . D 2 CL B 1 405 1 CL CL . E 3 MLT B 1 406 1 MLT MLT . F 4 HOH A 1 406 4 HOH HOH . F 4 HOH A 2 407 5 HOH HOH . F 4 HOH A 3 408 7 HOH HOH . F 4 HOH A 4 409 14 HOH HOH . F 4 HOH A 5 410 15 HOH HOH . F 4 HOH A 6 411 20 HOH HOH . F 4 HOH A 7 412 22 HOH HOH . F 4 HOH A 8 413 23 HOH HOH . F 4 HOH A 9 414 26 HOH HOH . F 4 HOH A 10 415 29 HOH HOH . F 4 HOH A 11 416 32 HOH HOH . F 4 HOH A 12 417 36 HOH HOH . F 4 HOH A 13 418 37 HOH HOH . F 4 HOH A 14 419 39 HOH HOH . F 4 HOH A 15 420 40 HOH HOH . F 4 HOH A 16 421 41 HOH HOH . F 4 HOH A 17 422 43 HOH HOH . F 4 HOH A 18 423 49 HOH HOH . F 4 HOH A 19 424 55 HOH HOH . F 4 HOH A 20 425 60 HOH HOH . F 4 HOH A 21 426 65 HOH HOH . F 4 HOH A 22 427 68 HOH HOH . F 4 HOH A 23 428 73 HOH HOH . F 4 HOH A 24 429 83 HOH HOH . F 4 HOH A 25 430 84 HOH HOH . F 4 HOH A 26 431 88 HOH HOH . F 4 HOH A 27 432 91 HOH HOH . F 4 HOH A 28 433 92 HOH HOH . F 4 HOH A 29 434 96 HOH HOH . F 4 HOH A 30 435 97 HOH HOH . F 4 HOH A 31 436 104 HOH HOH . F 4 HOH A 32 437 107 HOH HOH . F 4 HOH A 33 438 113 HOH HOH . F 4 HOH A 34 439 115 HOH HOH . F 4 HOH A 35 440 120 HOH HOH . F 4 HOH A 36 441 122 HOH HOH . F 4 HOH A 37 442 128 HOH HOH . F 4 HOH A 38 443 130 HOH HOH . F 4 HOH A 39 444 133 HOH HOH . F 4 HOH A 40 445 135 HOH HOH . F 4 HOH A 41 446 138 HOH HOH . F 4 HOH A 42 447 139 HOH HOH . F 4 HOH A 43 448 140 HOH HOH . F 4 HOH A 44 449 143 HOH HOH . F 4 HOH A 45 450 145 HOH HOH . F 4 HOH A 46 451 153 HOH HOH . F 4 HOH A 47 452 159 HOH HOH . F 4 HOH A 48 453 160 HOH HOH . F 4 HOH A 49 454 162 HOH HOH . F 4 HOH A 50 455 164 HOH HOH . F 4 HOH A 51 456 169 HOH HOH . F 4 HOH A 52 457 170 HOH HOH . F 4 HOH A 53 458 172 HOH HOH . F 4 HOH A 54 459 173 HOH HOH . F 4 HOH A 55 460 174 HOH HOH . F 4 HOH A 56 461 176 HOH HOH . F 4 HOH A 57 462 180 HOH HOH . F 4 HOH A 58 463 181 HOH HOH . F 4 HOH A 59 464 184 HOH HOH . F 4 HOH A 60 465 186 HOH HOH . F 4 HOH A 61 466 187 HOH HOH . F 4 HOH A 62 467 188 HOH HOH . F 4 HOH A 63 468 193 HOH HOH . F 4 HOH A 64 469 199 HOH HOH . F 4 HOH A 65 470 209 HOH HOH . F 4 HOH A 66 471 210 HOH HOH . F 4 HOH A 67 472 211 HOH HOH . F 4 HOH A 68 473 212 HOH HOH . F 4 HOH A 69 474 213 HOH HOH . F 4 HOH A 70 475 214 HOH HOH . F 4 HOH A 71 476 215 HOH HOH . F 4 HOH A 72 477 216 HOH HOH . F 4 HOH A 73 478 217 HOH HOH . F 4 HOH A 74 479 218 HOH HOH . F 4 HOH A 75 480 219 HOH HOH . F 4 HOH A 76 481 220 HOH HOH . F 4 HOH A 77 482 222 HOH HOH . F 4 HOH A 78 483 223 HOH HOH . F 4 HOH A 79 484 224 HOH HOH . F 4 HOH A 80 485 225 HOH HOH . F 4 HOH A 81 486 226 HOH HOH . F 4 HOH A 82 487 227 HOH HOH . F 4 HOH A 83 488 228 HOH HOH . F 4 HOH A 84 489 229 HOH HOH . F 4 HOH A 85 490 230 HOH HOH . F 4 HOH A 86 491 253 HOH HOH . F 4 HOH A 87 492 254 HOH HOH . F 4 HOH A 88 493 255 HOH HOH . F 4 HOH A 89 494 262 HOH HOH . F 4 HOH A 90 495 263 HOH HOH . F 4 HOH A 91 496 264 HOH HOH . F 4 HOH A 92 497 265 HOH HOH . F 4 HOH A 93 498 266 HOH HOH . F 4 HOH A 94 499 267 HOH HOH . F 4 HOH A 95 500 268 HOH HOH . F 4 HOH A 96 501 269 HOH HOH . F 4 HOH A 97 502 270 HOH HOH . F 4 HOH A 98 503 271 HOH HOH . F 4 HOH A 99 504 272 HOH HOH . F 4 HOH A 100 505 273 HOH HOH . F 4 HOH A 101 506 274 HOH HOH . F 4 HOH A 102 507 275 HOH HOH . F 4 HOH A 103 508 285 HOH HOH . F 4 HOH A 104 509 287 HOH HOH . F 4 HOH A 105 510 291 HOH HOH . F 4 HOH A 106 511 292 HOH HOH . F 4 HOH A 107 512 293 HOH HOH . F 4 HOH A 108 513 294 HOH HOH . G 4 HOH B 1 407 1 HOH HOH . G 4 HOH B 2 408 6 HOH HOH . G 4 HOH B 3 409 8 HOH HOH . G 4 HOH B 4 410 9 HOH HOH . G 4 HOH B 5 411 11 HOH HOH . G 4 HOH B 6 412 12 HOH HOH . G 4 HOH B 7 413 13 HOH HOH . G 4 HOH B 8 414 16 HOH HOH . G 4 HOH B 9 415 17 HOH HOH . G 4 HOH B 10 416 18 HOH HOH . G 4 HOH B 11 417 19 HOH HOH . G 4 HOH B 12 418 21 HOH HOH . G 4 HOH B 13 419 25 HOH HOH . G 4 HOH B 14 420 27 HOH HOH . G 4 HOH B 15 421 28 HOH HOH . G 4 HOH B 16 422 30 HOH HOH . G 4 HOH B 17 423 31 HOH HOH . G 4 HOH B 18 424 34 HOH HOH . G 4 HOH B 19 425 35 HOH HOH . G 4 HOH B 20 426 38 HOH HOH . G 4 HOH B 21 427 42 HOH HOH . G 4 HOH B 22 428 44 HOH HOH . G 4 HOH B 23 429 45 HOH HOH . G 4 HOH B 24 430 47 HOH HOH . G 4 HOH B 25 431 48 HOH HOH . G 4 HOH B 26 432 51 HOH HOH . G 4 HOH B 27 433 52 HOH HOH . G 4 HOH B 28 434 54 HOH HOH . G 4 HOH B 29 435 57 HOH HOH . G 4 HOH B 30 436 58 HOH HOH . G 4 HOH B 31 437 59 HOH HOH . G 4 HOH B 32 438 61 HOH HOH . G 4 HOH B 33 439 62 HOH HOH . G 4 HOH B 34 440 63 HOH HOH . G 4 HOH B 35 441 64 HOH HOH . G 4 HOH B 36 442 67 HOH HOH . G 4 HOH B 37 443 69 HOH HOH . G 4 HOH B 38 444 70 HOH HOH . G 4 HOH B 39 445 71 HOH HOH . G 4 HOH B 40 446 72 HOH HOH . G 4 HOH B 41 447 74 HOH HOH . G 4 HOH B 42 448 75 HOH HOH . G 4 HOH B 43 449 76 HOH HOH . G 4 HOH B 44 450 78 HOH HOH . G 4 HOH B 45 451 80 HOH HOH . G 4 HOH B 46 452 81 HOH HOH . G 4 HOH B 47 453 89 HOH HOH . G 4 HOH B 48 454 90 HOH HOH . G 4 HOH B 49 455 93 HOH HOH . G 4 HOH B 50 456 95 HOH HOH . G 4 HOH B 51 457 98 HOH HOH . G 4 HOH B 52 458 99 HOH HOH . G 4 HOH B 53 459 101 HOH HOH . G 4 HOH B 54 460 102 HOH HOH . G 4 HOH B 55 461 103 HOH HOH . G 4 HOH B 56 462 105 HOH HOH . G 4 HOH B 57 463 106 HOH HOH . G 4 HOH B 58 464 108 HOH HOH . G 4 HOH B 59 465 109 HOH HOH . G 4 HOH B 60 466 110 HOH HOH . G 4 HOH B 61 467 111 HOH HOH . G 4 HOH B 62 468 112 HOH HOH . G 4 HOH B 63 469 114 HOH HOH . G 4 HOH B 64 470 116 HOH HOH . G 4 HOH B 65 471 117 HOH HOH . G 4 HOH B 66 472 118 HOH HOH . G 4 HOH B 67 473 121 HOH HOH . G 4 HOH B 68 474 125 HOH HOH . G 4 HOH B 69 475 127 HOH HOH . G 4 HOH B 70 476 132 HOH HOH . G 4 HOH B 71 477 134 HOH HOH . G 4 HOH B 72 478 136 HOH HOH . G 4 HOH B 73 479 137 HOH HOH . G 4 HOH B 74 480 141 HOH HOH . G 4 HOH B 75 481 142 HOH HOH . G 4 HOH B 76 482 146 HOH HOH . G 4 HOH B 77 483 149 HOH HOH . G 4 HOH B 78 484 150 HOH HOH . G 4 HOH B 79 485 152 HOH HOH . G 4 HOH B 80 486 154 HOH HOH . G 4 HOH B 81 487 158 HOH HOH . G 4 HOH B 82 488 163 HOH HOH . G 4 HOH B 83 489 166 HOH HOH . G 4 HOH B 84 490 167 HOH HOH . G 4 HOH B 85 491 168 HOH HOH . G 4 HOH B 86 492 171 HOH HOH . G 4 HOH B 87 493 175 HOH HOH . G 4 HOH B 88 494 177 HOH HOH . G 4 HOH B 89 495 178 HOH HOH . G 4 HOH B 90 496 182 HOH HOH . G 4 HOH B 91 497 183 HOH HOH . G 4 HOH B 92 498 185 HOH HOH . G 4 HOH B 93 499 190 HOH HOH . G 4 HOH B 94 500 192 HOH HOH . G 4 HOH B 95 501 194 HOH HOH . G 4 HOH B 96 502 195 HOH HOH . G 4 HOH B 97 503 196 HOH HOH . G 4 HOH B 98 504 197 HOH HOH . G 4 HOH B 99 505 198 HOH HOH . G 4 HOH B 100 506 201 HOH HOH . G 4 HOH B 101 507 202 HOH HOH . G 4 HOH B 102 508 203 HOH HOH . G 4 HOH B 103 509 204 HOH HOH . G 4 HOH B 104 510 205 HOH HOH . G 4 HOH B 105 511 206 HOH HOH . G 4 HOH B 106 512 207 HOH HOH . G 4 HOH B 107 513 208 HOH HOH . G 4 HOH B 108 514 231 HOH HOH . G 4 HOH B 109 515 232 HOH HOH . G 4 HOH B 110 516 233 HOH HOH . G 4 HOH B 111 517 234 HOH HOH . G 4 HOH B 112 518 235 HOH HOH . G 4 HOH B 113 519 236 HOH HOH . G 4 HOH B 114 520 237 HOH HOH . G 4 HOH B 115 521 238 HOH HOH . G 4 HOH B 116 522 239 HOH HOH . G 4 HOH B 117 523 240 HOH HOH . G 4 HOH B 118 524 241 HOH HOH . G 4 HOH B 119 525 243 HOH HOH . G 4 HOH B 120 526 244 HOH HOH . G 4 HOH B 121 527 245 HOH HOH . G 4 HOH B 122 528 246 HOH HOH . G 4 HOH B 123 529 247 HOH HOH . G 4 HOH B 124 530 248 HOH HOH . G 4 HOH B 125 531 249 HOH HOH . G 4 HOH B 126 532 250 HOH HOH . G 4 HOH B 127 533 251 HOH HOH . G 4 HOH B 128 534 252 HOH HOH . G 4 HOH B 129 535 256 HOH HOH . G 4 HOH B 130 536 257 HOH HOH . G 4 HOH B 131 537 258 HOH HOH . G 4 HOH B 132 538 259 HOH HOH . G 4 HOH B 133 539 260 HOH HOH . G 4 HOH B 134 540 261 HOH HOH . G 4 HOH B 135 541 276 HOH HOH . G 4 HOH B 136 542 277 HOH HOH . G 4 HOH B 137 543 278 HOH HOH . G 4 HOH B 138 544 279 HOH HOH . G 4 HOH B 139 545 280 HOH HOH . G 4 HOH B 140 546 281 HOH HOH . G 4 HOH B 141 547 282 HOH HOH . G 4 HOH B 142 548 283 HOH HOH . G 4 HOH B 143 549 284 HOH HOH . G 4 HOH B 144 550 286 HOH HOH . G 4 HOH B 145 551 288 HOH HOH . G 4 HOH B 146 552 289 HOH HOH . G 4 HOH B 147 553 290 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLT . . . E 3 61.669 -50.385 -13.276 1 66.99 ? C1 MLT 406 B 1 HETATM 2 O O1 MLT . . . E 3 62.253 -49.327 -13.603 1 69.56 ? O1 MLT 406 B 1 HETATM 3 O O2 MLT . . . E 3 61.567 -50.708 -12.069 1 67.22 ? O2 MLT 406 B 1 HETATM 4 C C2 MLT . . . E 3 61.129 -51.278 -14.348 1 65.13 ? C2 MLT 406 B 1 HETATM 5 O O3 MLT . . . E 3 60.364 -52.324 -13.786 1 58.61 ? O3 MLT 406 B 1 HETATM 6 C C3 MLT . . . E 3 62.373 -51.889 -14.949 1 62.37 ? C3 MLT 406 B 1 HETATM 7 C C4 MLT . . . E 3 62.374 -51.833 -16.442 1 60.59 ? C4 MLT 406 B 1 HETATM 8 O O4 MLT . . . E 3 62.926 -50.902 -17.077 1 45.49 ? O4 MLT 406 B 1 HETATM 9 O O5 MLT . . . E 3 61.825 -52.772 -17.031 1 58.43 ? O5 MLT 406 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #