data_3RRB # _model_server_result.job_id awBVtInjz91P1OqNvz0gRg _model_server_result.datetime_utc '2024-11-14 23:58:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rrb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":492}' # _entry.id 3RRB # _exptl.entry_id 3RRB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3RRB _cell.length_a 122.102 _cell.length_b 122.102 _cell.length_c 155.614 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RRB _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 5 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 6 'crystal symmetry operation' 6_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 7 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 8 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 64 A ASN 52 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.016 ? metalc ? metalc2 A O ASP 126 A ASP 114 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3 ? metalc ? metalc3 A OD2 ASP 126 A ASP 114 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.373 ? metalc ? metalc4 A OD1 ASP 126 A ASP 114 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.425 ? metalc ? metalc5 A O PHE 129 A PHE 117 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? metalc ? metalc6 A O VAL 158 A VAL 146 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.931 ? metalc ? metalc7 A O VAL 160 A VAL 148 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.821 ? metalc ? metalc8 A OG SER 162 A SER 150 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.993 ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 3RRB _atom_sites.fract_transf_matrix[1][1] 0.00819 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00819 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006426 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 K A 1 491 1 K K . D 4 AMP A 1 492 2 AMP AMP . E 4 AMP A 1 493 3 AMP AMP . F 5 HOH A 1 494 1 HOH HOH . F 5 HOH A 2 495 2 HOH HOH . F 5 HOH A 3 496 3 HOH HOH . F 5 HOH A 4 497 4 HOH HOH . F 5 HOH A 5 498 5 HOH HOH . F 5 HOH A 6 499 6 HOH HOH . F 5 HOH A 7 500 7 HOH HOH . F 5 HOH A 8 501 8 HOH HOH . F 5 HOH A 9 502 9 HOH HOH . F 5 HOH A 10 503 10 HOH HOH . F 5 HOH A 11 504 11 HOH HOH . F 5 HOH A 12 505 12 HOH HOH . F 5 HOH A 13 506 13 HOH HOH . F 5 HOH A 14 507 14 HOH HOH . F 5 HOH A 15 508 15 HOH HOH . F 5 HOH A 16 509 16 HOH HOH . F 5 HOH A 17 510 17 HOH HOH . F 5 HOH A 18 511 19 HOH HOH . F 5 HOH A 19 512 20 HOH HOH . F 5 HOH A 20 513 21 HOH HOH . F 5 HOH A 21 514 22 HOH HOH . F 5 HOH A 22 515 23 HOH HOH . F 5 HOH A 23 516 24 HOH HOH . F 5 HOH A 24 517 25 HOH HOH . F 5 HOH A 25 518 26 HOH HOH . F 5 HOH A 26 519 27 HOH HOH . F 5 HOH A 27 520 28 HOH HOH . F 5 HOH A 28 521 29 HOH HOH . F 5 HOH A 29 522 30 HOH HOH . F 5 HOH A 30 523 31 HOH HOH . F 5 HOH A 31 524 32 HOH HOH . F 5 HOH A 32 525 33 HOH HOH . F 5 HOH A 33 526 34 HOH HOH . F 5 HOH A 34 527 35 HOH HOH . F 5 HOH A 35 528 36 HOH HOH . F 5 HOH A 36 529 37 HOH HOH . F 5 HOH A 37 530 38 HOH HOH . G 5 HOH B 1 18 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . D 4 -4.991 23.799 40.2 1 58.79 ? P AMP 492 A 1 HETATM 2 O O1P AMP . . . D 4 -5.845 22.611 40.511 1 59.1 ? O1P AMP 492 A 1 HETATM 3 O O2P AMP . . . D 4 -5.871 24.963 39.736 1 60.82 ? O2P AMP 492 A 1 HETATM 4 O O3P AMP . . . D 4 -3.866 23.994 41.193 1 54.43 ? O3P AMP 492 A 1 HETATM 5 O O5' AMP . . . D 4 -4.198 23.491 38.81 1 53.11 ? O5' AMP 492 A 1 HETATM 6 C C5' AMP . . . D 4 -4.914 23.34 37.592 1 49.52 ? C5' AMP 492 A 1 HETATM 7 C C4' AMP . . . D 4 -3.917 23.259 36.467 1 50.42 ? C4' AMP 492 A 1 HETATM 8 O O4' AMP . . . D 4 -4.547 22.929 35.222 1 50.61 ? O4' AMP 492 A 1 HETATM 9 C C3' AMP . . . D 4 -3.336 24.635 36.19 1 50.67 ? C3' AMP 492 A 1 HETATM 10 O O3' AMP . . . D 4 -2.078 24.405 35.597 1 48.53 ? O3' AMP 492 A 1 HETATM 11 C C2' AMP . . . D 4 -4.277 25.28 35.193 1 49.57 ? C2' AMP 492 A 1 HETATM 12 O O2' AMP . . . D 4 -3.733 26.33 34.414 1 46.92 ? O2' AMP 492 A 1 HETATM 13 C C1' AMP . . . D 4 -4.629 24.077 34.341 1 49.71 ? C1' AMP 492 A 1 HETATM 14 N N9 AMP . . . D 4 -6.004 24.135 33.792 1 50.55 ? N9 AMP 492 A 1 HETATM 15 C C8 AMP . . . D 4 -7.155 23.981 34.492 1 51.66 ? C8 AMP 492 A 1 HETATM 16 N N7 AMP . . . D 4 -8.236 24.068 33.662 1 49.83 ? N7 AMP 492 A 1 HETATM 17 C C5 AMP . . . D 4 -7.77 24.28 32.429 1 49.32 ? C5 AMP 492 A 1 HETATM 18 C C6 AMP . . . D 4 -8.362 24.454 31.097 1 48.49 ? C6 AMP 492 A 1 HETATM 19 N N6 AMP . . . D 4 -9.689 24.432 30.945 1 50.3 ? N6 AMP 492 A 1 HETATM 20 N N1 AMP . . . D 4 -7.556 24.667 30.049 1 49.84 ? N1 AMP 492 A 1 HETATM 21 C C2 AMP . . . D 4 -6.216 24.716 30.199 1 49.5 ? C2 AMP 492 A 1 HETATM 22 N N3 AMP . . . D 4 -5.6 24.549 31.397 1 50.51 ? N3 AMP 492 A 1 HETATM 23 C C4 AMP . . . D 4 -6.31 24.334 32.52 1 49.33 ? C4 AMP 492 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #