data_3RRD
#
_model_server_result.job_id            AxdQOViQnMP4C2M5AAlaqw 
_model_server_result.datetime_utc      '2024-11-15 05:46:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3rrd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":238}' 
#
_entry.id    3RRD 
#
_exptl.entry_id    3RRD 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3RRD 
_cell.length_a            61.89 
_cell.length_b            87.67 
_cell.length_c            88.78 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3RRD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 0 0 88.78 
4 'crystal symmetry operation' 4_556 x,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 88.78 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 8 A GLU 8 1_555 B MN MN . A MN 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
metalc ? metalc2 A OD2 ASP 10 A ASP 10 1_555 B MN MN . A MN 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? 
metalc ? metalc3 A OD1 ASP 10 A ASP 10 1_555 C CA CA . A CA 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? 
metalc ? metalc4 A OD2 ASP 10 A ASP 10 1_555 C CA CA . A CA 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? 
metalc ? metalc5 A O TYR 12 A TYR 12 1_555 C CA CA . A CA 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? 
metalc ? metalc6 A OD1 ASN 14 A ASN 14 1_555 C CA CA . A CA 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? 
metalc ? metalc7 A OD1 ASP 19 A ASP 19 1_555 B MN MN . A MN 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? 
metalc ? metalc8 A OD2 ASP 19 A ASP 19 1_555 C CA CA . A CA 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? 
metalc ? metalc9 A NE2 HIS 24 A HIS 24 1_555 B MN MN . A MN 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? 
metalc ? metalc10 B MN MN . A MN 238 1_555 D O HOH . A HOH 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? 
metalc ? metalc11 C CA CA . A CA 239 1_555 D O HOH . A HOH 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
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_atom_sites.entry_id                     3RRD 
_atom_sites.fract_transf_matrix[1][1]    0.016158 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011406 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011264 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MN A 1 238 238 MN MN . 
C 3 CA A 1 239 239 CA CA . 
D 4 HOH A 1 240 1 HOH HOH . 
D 4 HOH A 2 241 2 HOH HOH . 
D 4 HOH A 3 242 3 HOH HOH . 
D 4 HOH A 4 243 4 HOH HOH . 
D 4 HOH A 5 244 5 HOH HOH . 
D 4 HOH A 6 245 6 HOH HOH . 
D 4 HOH A 7 246 7 HOH HOH . 
D 4 HOH A 8 247 8 HOH HOH . 
D 4 HOH A 9 248 9 HOH HOH . 
D 4 HOH A 10 249 10 HOH HOH . 
D 4 HOH A 11 250 11 HOH HOH . 
D 4 HOH A 12 251 12 HOH HOH . 
D 4 HOH A 13 252 13 HOH HOH . 
D 4 HOH A 14 253 14 HOH HOH . 
D 4 HOH A 15 254 15 HOH HOH . 
D 4 HOH A 16 255 16 HOH HOH . 
D 4 HOH A 17 256 17 HOH HOH . 
D 4 HOH A 18 257 18 HOH HOH . 
D 4 HOH A 19 258 19 HOH HOH . 
D 4 HOH A 20 259 20 HOH HOH . 
D 4 HOH A 21 260 22 HOH HOH . 
D 4 HOH A 22 261 23 HOH HOH . 
D 4 HOH A 23 262 24 HOH HOH . 
D 4 HOH A 24 263 25 HOH HOH . 
D 4 HOH A 25 264 26 HOH HOH . 
D 4 HOH A 26 265 27 HOH HOH . 
D 4 HOH A 27 266 29 HOH HOH . 
D 4 HOH A 28 267 30 HOH HOH . 
D 4 HOH A 29 268 31 HOH HOH . 
D 4 HOH A 30 269 32 HOH HOH . 
D 4 HOH A 31 270 33 HOH HOH . 
D 4 HOH A 32 271 34 HOH HOH . 
D 4 HOH A 33 272 35 HOH HOH . 
D 4 HOH A 34 273 36 HOH HOH . 
D 4 HOH A 35 274 37 HOH HOH . 
D 4 HOH A 36 275 38 HOH HOH . 
D 4 HOH A 37 276 41 HOH HOH . 
D 4 HOH A 38 277 42 HOH HOH . 
D 4 HOH A 39 278 43 HOH HOH . 
D 4 HOH A 40 279 44 HOH HOH . 
D 4 HOH A 41 280 45 HOH HOH . 
D 4 HOH A 42 281 47 HOH HOH . 
D 4 HOH A 43 282 48 HOH HOH . 
D 4 HOH A 44 283 49 HOH HOH . 
D 4 HOH A 45 284 50 HOH HOH . 
D 4 HOH A 46 285 51 HOH HOH . 
D 4 HOH A 47 286 52 HOH HOH . 
D 4 HOH A 48 287 53 HOH HOH . 
D 4 HOH A 49 288 54 HOH HOH . 
D 4 HOH A 50 289 57 HOH HOH . 
D 4 HOH A 51 290 58 HOH HOH . 
D 4 HOH A 52 291 60 HOH HOH . 
D 4 HOH A 53 292 61 HOH HOH . 
D 4 HOH A 54 293 62 HOH HOH . 
D 4 HOH A 55 294 63 HOH HOH . 
D 4 HOH A 56 295 64 HOH HOH . 
D 4 HOH A 57 296 67 HOH HOH . 
D 4 HOH A 58 297 69 HOH HOH . 
D 4 HOH A 59 298 71 HOH HOH . 
D 4 HOH A 60 299 75 HOH HOH . 
D 4 HOH A 61 300 81 HOH HOH . 
D 4 HOH A 62 301 84 HOH HOH . 
D 4 HOH A 63 302 87 HOH HOH . 
D 4 HOH A 64 303 131 HOH HOH . 
D 4 HOH A 65 304 137 HOH HOH . 
D 4 HOH A 66 305 163 HOH HOH . 
D 4 HOH A 67 306 167 HOH HOH . 
D 4 HOH A 68 307 169 HOH HOH . 
D 4 HOH A 69 308 176 HOH HOH . 
D 4 HOH A 70 309 178 HOH HOH . 
D 4 HOH A 71 310 187 HOH HOH . 
D 4 HOH A 72 311 195 HOH HOH . 
D 4 HOH A 73 312 200 HOH HOH . 
D 4 HOH A 74 313 202 HOH HOH . 
D 4 HOH A 75 314 220 HOH HOH . 
D 4 HOH A 76 315 230 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               14.648 
_atom_site.Cartn_y               16.344 
_atom_site.Cartn_z               19.155 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        20.07 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           238 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           363 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#