data_3RRF # _model_server_result.job_id 11PzrmVPKb4uoaGnB1--zg _model_server_result.datetime_utc '2024-11-06 13:44:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rrf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":495}' # _entry.id 3RRF # _exptl.entry_id 3RRF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3RRF _cell.length_a 122.407 _cell.length_b 122.407 _cell.length_c 155.672 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RRF _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 5 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 6 'crystal symmetry operation' 6_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 7 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 8 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 64 A ASN 52 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.849 ? metalc ? metalc2 A O ASP 126 A ASP 114 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.933 ? metalc ? metalc3 A OD2 ASP 126 A ASP 114 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.314 ? metalc ? metalc4 A OD1 ASP 126 A ASP 114 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.484 ? metalc ? metalc5 A O PHE 129 A PHE 117 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? metalc ? metalc6 A O VAL 158 A VAL 146 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? metalc ? metalc7 A O VAL 160 A VAL 148 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? metalc ? metalc8 A OG SER 162 A SER 150 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.908 ? metalc ? metalc9 D MG MG . A MG 492 1_555 F O1A ATP . A ATP 494 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc10 D MG MG . A MG 492 1_555 F O2G ATP . A ATP 494 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc11 D MG MG . A MG 492 1_555 F O1B ATP . A ATP 494 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc12 D MG MG . A MG 492 1_555 H O HOH . A HOH 532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc13 D MG MG . A MG 492 1_555 H O HOH . A HOH 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc14 D MG MG . A MG 492 1_555 H O HOH . A HOH 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 178 n n C1 C2 GOL sing 179 n n C1 H11 GOL sing 180 n n C1 H12 GOL sing 181 n n O1 HO1 GOL sing 182 n n C2 O2 GOL sing 183 n n C2 C3 GOL sing 184 n n C2 H2 GOL sing 185 n n O2 HO2 GOL sing 186 n n C3 O3 GOL sing 187 n n C3 H31 GOL sing 188 n n C3 H32 GOL sing 189 n n O3 HO3 GOL sing 190 n n # _atom_sites.entry_id 3RRF _atom_sites.fract_transf_matrix[1][1] 0.008169 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008169 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006424 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 K A 1 491 1 K K . D 4 MG A 1 492 2 MG MG . E 5 ATP A 1 493 3 ATP ATP . F 5 ATP A 1 494 4 ATP ATP . G 6 GOL A 1 495 5 GOL GOL . H 7 HOH A 1 496 2 HOH HOH . H 7 HOH A 2 497 3 HOH HOH . H 7 HOH A 3 498 4 HOH HOH . H 7 HOH A 4 499 5 HOH HOH . H 7 HOH A 5 500 6 HOH HOH . H 7 HOH A 6 501 7 HOH HOH . H 7 HOH A 7 502 8 HOH HOH . H 7 HOH A 8 503 9 HOH HOH . H 7 HOH A 9 504 10 HOH HOH . H 7 HOH A 10 505 11 HOH HOH . H 7 HOH A 11 506 12 HOH HOH . H 7 HOH A 12 507 13 HOH HOH . H 7 HOH A 13 508 14 HOH HOH . H 7 HOH A 14 509 15 HOH HOH . H 7 HOH A 15 510 16 HOH HOH . H 7 HOH A 16 511 17 HOH HOH . H 7 HOH A 17 512 18 HOH HOH . H 7 HOH A 18 513 19 HOH HOH . H 7 HOH A 19 514 20 HOH HOH . H 7 HOH A 20 515 21 HOH HOH . H 7 HOH A 21 516 22 HOH HOH . H 7 HOH A 22 517 23 HOH HOH . H 7 HOH A 23 518 24 HOH HOH . H 7 HOH A 24 519 25 HOH HOH . H 7 HOH A 25 520 26 HOH HOH . H 7 HOH A 26 521 27 HOH HOH . H 7 HOH A 27 522 28 HOH HOH . H 7 HOH A 28 523 29 HOH HOH . H 7 HOH A 29 524 30 HOH HOH . H 7 HOH A 30 525 31 HOH HOH . H 7 HOH A 31 526 32 HOH HOH . H 7 HOH A 32 527 33 HOH HOH . H 7 HOH A 33 528 34 HOH HOH . H 7 HOH A 34 529 35 HOH HOH . H 7 HOH A 35 530 36 HOH HOH . H 7 HOH A 36 531 37 HOH HOH . H 7 HOH A 37 532 38 HOH HOH . H 7 HOH A 38 533 39 HOH HOH . H 7 HOH A 39 534 40 HOH HOH . H 7 HOH A 40 535 41 HOH HOH . H 7 HOH A 41 536 42 HOH HOH . H 7 HOH A 42 537 43 HOH HOH . H 7 HOH A 43 538 44 HOH HOH . H 7 HOH A 44 539 45 HOH HOH . H 7 HOH A 45 540 46 HOH HOH . H 7 HOH A 46 541 47 HOH HOH . H 7 HOH A 47 542 48 HOH HOH . H 7 HOH A 48 543 49 HOH HOH . H 7 HOH A 49 544 50 HOH HOH . H 7 HOH A 50 545 51 HOH HOH . H 7 HOH A 51 546 52 HOH HOH . H 7 HOH A 52 547 53 HOH HOH . H 7 HOH A 53 548 54 HOH HOH . H 7 HOH A 54 549 55 HOH HOH . H 7 HOH A 55 550 56 HOH HOH . H 7 HOH A 56 551 57 HOH HOH . H 7 HOH A 57 552 58 HOH HOH . H 7 HOH A 58 553 59 HOH HOH . H 7 HOH A 59 554 60 HOH HOH . H 7 HOH A 60 555 61 HOH HOH . H 7 HOH A 61 556 62 HOH HOH . H 7 HOH A 62 557 63 HOH HOH . H 7 HOH A 63 558 64 HOH HOH . H 7 HOH A 64 559 65 HOH HOH . H 7 HOH A 65 560 66 HOH HOH . H 7 HOH A 66 561 67 HOH HOH . H 7 HOH A 67 562 68 HOH HOH . H 7 HOH A 68 563 69 HOH HOH . H 7 HOH A 69 564 70 HOH HOH . H 7 HOH A 70 565 71 HOH HOH . H 7 HOH A 71 566 72 HOH HOH . H 7 HOH A 72 567 73 HOH HOH . H 7 HOH A 73 568 74 HOH HOH . H 7 HOH A 74 569 75 HOH HOH . H 7 HOH A 75 570 76 HOH HOH . H 7 HOH A 76 571 77 HOH HOH . H 7 HOH A 77 572 78 HOH HOH . H 7 HOH A 78 573 79 HOH HOH . H 7 HOH A 79 574 80 HOH HOH . H 7 HOH A 80 575 81 HOH HOH . H 7 HOH A 81 576 82 HOH HOH . H 7 HOH A 82 577 83 HOH HOH . H 7 HOH A 83 578 84 HOH HOH . H 7 HOH A 84 579 85 HOH HOH . H 7 HOH A 85 580 86 HOH HOH . H 7 HOH A 86 581 87 HOH HOH . H 7 HOH A 87 582 88 HOH HOH . H 7 HOH A 88 583 89 HOH HOH . H 7 HOH A 89 584 90 HOH HOH . H 7 HOH A 90 585 91 HOH HOH . H 7 HOH A 91 586 92 HOH HOH . H 7 HOH A 92 587 93 HOH HOH . H 7 HOH A 93 588 94 HOH HOH . H 7 HOH A 94 589 95 HOH HOH . H 7 HOH A 95 590 97 HOH HOH . H 7 HOH A 96 591 98 HOH HOH . H 7 HOH A 97 592 99 HOH HOH . H 7 HOH A 98 593 100 HOH HOH . H 7 HOH A 99 594 101 HOH HOH . H 7 HOH A 100 595 102 HOH HOH . H 7 HOH A 101 596 103 HOH HOH . H 7 HOH A 102 597 104 HOH HOH . H 7 HOH A 103 598 105 HOH HOH . H 7 HOH A 104 599 106 HOH HOH . H 7 HOH A 105 600 107 HOH HOH . H 7 HOH A 106 601 108 HOH HOH . H 7 HOH A 107 602 109 HOH HOH . H 7 HOH A 108 603 110 HOH HOH . H 7 HOH A 109 604 112 HOH HOH . H 7 HOH A 110 605 113 HOH HOH . H 7 HOH A 111 606 114 HOH HOH . H 7 HOH A 112 607 115 HOH HOH . H 7 HOH A 113 608 116 HOH HOH . H 7 HOH A 114 609 117 HOH HOH . H 7 HOH A 115 610 118 HOH HOH . H 7 HOH A 116 611 119 HOH HOH . H 7 HOH A 117 612 120 HOH HOH . H 7 HOH A 118 613 121 HOH HOH . H 7 HOH A 119 614 122 HOH HOH . H 7 HOH A 120 615 123 HOH HOH . H 7 HOH A 121 616 124 HOH HOH . H 7 HOH A 122 617 125 HOH HOH . H 7 HOH A 123 618 126 HOH HOH . H 7 HOH A 124 619 127 HOH HOH . H 7 HOH A 125 620 128 HOH HOH . H 7 HOH A 126 621 129 HOH HOH . H 7 HOH A 127 622 130 HOH HOH . H 7 HOH A 128 623 131 HOH HOH . H 7 HOH A 129 624 132 HOH HOH . H 7 HOH A 130 625 133 HOH HOH . H 7 HOH A 131 626 134 HOH HOH . I 7 HOH B 1 8 1 HOH HOH . I 7 HOH B 2 96 96 HOH HOH . I 7 HOH B 3 111 111 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 6 -3.932 -48.699 -11.598 1 60.43 ? C1 GOL 495 A 1 HETATM 2 O O1 GOL . . . G 6 -2.803 -49.395 -11.181 1 63.2 ? O1 GOL 495 A 1 HETATM 3 C C2 GOL . . . G 6 -5.068 -49.685 -11.57 1 60.93 ? C2 GOL 495 A 1 HETATM 4 O O2 GOL . . . G 6 -6.261 -48.953 -11.38 1 59.76 ? O2 GOL 495 A 1 HETATM 5 C C3 GOL . . . G 6 -4.801 -50.711 -10.457 1 60.82 ? C3 GOL 495 A 1 HETATM 6 O O3 GOL . . . G 6 -4.375 -50.029 -9.293 1 58.46 ? O3 GOL 495 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 6 #