data_3RRG # _model_server_result.job_id 3jWkA5XIH4p6H6OfMJSMyg _model_server_result.datetime_utc '2025-01-10 13:05:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rrg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":833}' # _entry.id 3RRG # _exptl.entry_id 3RRG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3RRG _cell.length_a 110.279 _cell.length_b 110.279 _cell.length_c 90.966 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RRG _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3' DC 11 B DC 111 1_555 B P DDG 12 B DDG 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.604 ? covale ? covale2 C O3' 3DR 4 C 3DR 204 1_555 C P DC 5 C DC 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.609 ? metalc ? metalc1 I O HOH . A HOH 4 1_555 E NA NA . A NA 833 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.005 ? metalc ? metalc2 I O HOH . A HOH 5 1_555 E NA NA . A NA 833 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.118 ? metalc ? metalc3 A OD2 ASP 80 A ASP 372 1_555 E NA NA . A NA 833 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.103 ? hydrog WATSON-CRICK hydrog1 B N1 DG 1 B DG 101 1_555 C N3 DC 16 C DC 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N2 DG 1 B DG 101 1_555 C O2 DC 16 C DC 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O6 DG 1 B DG 101 1_555 C N4 DC 16 C DC 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N1 DA 2 B DA 102 1_555 C N3 DT 15 C DT 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N6 DA 2 B DA 102 1_555 C O4 DT 15 C DT 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N3 DC 3 B DC 103 1_555 C N1 DG 14 C DG 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N4 DC 3 B DC 103 1_555 C O6 DG 14 C DG 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B O2 DC 3 B DC 103 1_555 C N2 DG 14 C DG 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N3 DC 4 B DC 104 1_555 C N1 DG 13 C DG 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N4 DC 4 B DC 104 1_555 C O6 DG 13 C DG 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B O2 DC 4 B DC 104 1_555 C N2 DG 13 C DG 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N1 DA 5 B DA 105 1_555 C N3 DT 12 C DT 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N6 DA 5 B DA 105 1_555 C O4 DT 12 C DT 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N3 DC 6 B DC 106 1_555 C N1 DG 11 C DG 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N4 DC 6 B DC 106 1_555 C O6 DG 11 C DG 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B O2 DC 6 B DC 106 1_555 C N2 DG 11 C DG 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B N1 DG 7 B DG 107 1_555 C N3 DC 10 C DC 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B N2 DG 7 B DG 107 1_555 C O2 DC 10 C DC 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B O6 DG 7 B DG 107 1_555 C N4 DC 10 C DC 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B N1 DG 8 B DG 108 1_555 C N3 DC 9 C DC 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B N2 DG 8 B DG 108 1_555 C O2 DC 9 C DC 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B O6 DG 8 B DG 108 1_555 C N4 DC 9 C DC 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B N3 DC 9 B DC 109 1_555 C N1 DG 8 C DG 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 B N4 DC 9 B DC 109 1_555 C O6 DG 8 C DG 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 B O2 DC 9 B DC 109 1_555 C N2 DG 8 C DG 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 B N1 DG 10 B DG 110 1_555 C N3 DC 7 C DC 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 B N2 DG 10 B DG 110 1_555 C O2 DC 7 C DC 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 B O6 DG 10 B DG 110 1_555 C N4 DC 7 C DC 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 B N3 DC 11 B DC 111 1_555 C N1 DG 6 C DG 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 B N4 DC 11 B DC 111 1_555 C O6 DG 6 C DG 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 B O2 DC 11 B DC 111 1_555 C N2 DG 6 C DG 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 B N1 DDG 12 B DDG 112 1_555 C N3 DC 5 C DC 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 B N2 DDG 12 B DDG 112 1_555 C O2 DC 5 C DC 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 B O6 DDG 12 B DDG 112 1_555 C N4 DC 5 C DC 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3RRG _atom_sites.fract_transf_matrix[1][1] 0.009068 _atom_sites.fract_transf_matrix[1][2] 0.005235 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010471 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010993 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 DG3 A 1 1 1 DG3 DG3 . E 5 NA A 1 833 1 NA NA . F 6 GOL A 1 834 1 GOL GOL . G 7 ACT A 1 835 1 ACT ACT . H 6 GOL A 1 836 1 GOL GOL . I 8 HOH A 1 2 2 HOH HOH . I 8 HOH A 2 4 4 HOH HOH . I 8 HOH A 3 5 5 HOH HOH . I 8 HOH A 4 7 7 HOH HOH . I 8 HOH A 5 9 9 HOH HOH . I 8 HOH A 6 10 10 HOH HOH . I 8 HOH A 7 12 12 HOH HOH . I 8 HOH A 8 15 15 HOH HOH . I 8 HOH A 9 19 19 HOH HOH . I 8 HOH A 10 20 20 HOH HOH . I 8 HOH A 11 21 21 HOH HOH . I 8 HOH A 12 24 24 HOH HOH . I 8 HOH A 13 25 25 HOH HOH . I 8 HOH A 14 26 26 HOH HOH . I 8 HOH A 15 27 27 HOH HOH . I 8 HOH A 16 30 30 HOH HOH . I 8 HOH A 17 31 31 HOH HOH . I 8 HOH A 18 32 32 HOH HOH . I 8 HOH A 19 34 34 HOH HOH . I 8 HOH A 20 36 36 HOH HOH . I 8 HOH A 21 37 37 HOH HOH . I 8 HOH A 22 38 38 HOH HOH . I 8 HOH A 23 39 39 HOH HOH . I 8 HOH A 24 41 41 HOH HOH . I 8 HOH A 25 43 43 HOH HOH . I 8 HOH A 26 44 44 HOH HOH . I 8 HOH A 27 45 45 HOH HOH . I 8 HOH A 28 47 47 HOH HOH . I 8 HOH A 29 48 48 HOH HOH . I 8 HOH A 30 49 49 HOH HOH . I 8 HOH A 31 50 50 HOH HOH . I 8 HOH A 32 51 51 HOH HOH . I 8 HOH A 33 52 52 HOH HOH . I 8 HOH A 34 53 53 HOH HOH . I 8 HOH A 35 54 54 HOH HOH . I 8 HOH A 36 55 55 HOH HOH . I 8 HOH A 37 58 58 HOH HOH . I 8 HOH A 38 59 59 HOH HOH . I 8 HOH A 39 60 60 HOH HOH . I 8 HOH A 40 63 63 HOH HOH . I 8 HOH A 41 64 64 HOH HOH . I 8 HOH A 42 65 65 HOH HOH . I 8 HOH A 43 66 66 HOH HOH . I 8 HOH A 44 67 67 HOH HOH . I 8 HOH A 45 70 70 HOH HOH . I 8 HOH A 46 72 72 HOH HOH . I 8 HOH A 47 73 73 HOH HOH . I 8 HOH A 48 74 74 HOH HOH . I 8 HOH A 49 77 77 HOH HOH . I 8 HOH A 50 78 78 HOH HOH . I 8 HOH A 51 79 79 HOH HOH . I 8 HOH A 52 80 80 HOH HOH . I 8 HOH A 53 83 83 HOH HOH . I 8 HOH A 54 84 84 HOH HOH . I 8 HOH A 55 86 86 HOH HOH . I 8 HOH A 56 87 87 HOH HOH . I 8 HOH A 57 88 88 HOH HOH . I 8 HOH A 58 89 89 HOH HOH . I 8 HOH A 59 90 90 HOH HOH . I 8 HOH A 60 91 91 HOH HOH . I 8 HOH A 61 92 92 HOH HOH . I 8 HOH A 62 93 93 HOH HOH . I 8 HOH A 63 94 94 HOH HOH . I 8 HOH A 64 95 95 HOH HOH . I 8 HOH A 65 96 96 HOH HOH . I 8 HOH A 66 100 100 HOH HOH . I 8 HOH A 67 102 102 HOH HOH . I 8 HOH A 68 103 103 HOH HOH . I 8 HOH A 69 108 108 HOH HOH . I 8 HOH A 70 109 109 HOH HOH . I 8 HOH A 71 111 111 HOH HOH . I 8 HOH A 72 114 114 HOH HOH . I 8 HOH A 73 115 115 HOH HOH . I 8 HOH A 74 117 117 HOH HOH . I 8 HOH A 75 119 119 HOH HOH . I 8 HOH A 76 121 121 HOH HOH . I 8 HOH A 77 122 122 HOH HOH . I 8 HOH A 78 123 123 HOH HOH . I 8 HOH A 79 124 124 HOH HOH . I 8 HOH A 80 125 125 HOH HOH . I 8 HOH A 81 126 126 HOH HOH . I 8 HOH A 82 127 127 HOH HOH . I 8 HOH A 83 129 129 HOH HOH . I 8 HOH A 84 130 130 HOH HOH . I 8 HOH A 85 131 131 HOH HOH . I 8 HOH A 86 132 132 HOH HOH . I 8 HOH A 87 133 133 HOH HOH . I 8 HOH A 88 134 134 HOH HOH . I 8 HOH A 89 135 135 HOH HOH . I 8 HOH A 90 137 137 HOH HOH . I 8 HOH A 91 138 138 HOH HOH . I 8 HOH A 92 140 140 HOH HOH . I 8 HOH A 93 141 141 HOH HOH . I 8 HOH A 94 144 144 HOH HOH . I 8 HOH A 95 145 145 HOH HOH . I 8 HOH A 96 837 1 HOH HOH . J 8 HOH B 1 8 8 HOH HOH . J 8 HOH B 2 11 11 HOH HOH . J 8 HOH B 3 13 13 HOH HOH . J 8 HOH B 4 16 16 HOH HOH . J 8 HOH B 5 18 18 HOH HOH . J 8 HOH B 6 33 33 HOH HOH . J 8 HOH B 7 40 40 HOH HOH . J 8 HOH B 8 46 46 HOH HOH . J 8 HOH B 9 69 69 HOH HOH . J 8 HOH B 10 71 71 HOH HOH . J 8 HOH B 11 75 75 HOH HOH . J 8 HOH B 12 76 76 HOH HOH . J 8 HOH B 13 85 85 HOH HOH . J 8 HOH B 14 99 99 HOH HOH . J 8 HOH B 15 113 101 HOH HOH . J 8 HOH B 16 114 105 HOH HOH . J 8 HOH B 17 115 107 HOH HOH . J 8 HOH B 18 116 116 HOH HOH . J 8 HOH B 19 118 118 HOH HOH . J 8 HOH B 20 142 142 HOH HOH . J 8 HOH B 21 143 143 HOH HOH . K 8 HOH C 1 6 6 HOH HOH . K 8 HOH C 2 14 14 HOH HOH . K 8 HOH C 3 17 17 HOH HOH . K 8 HOH C 4 22 22 HOH HOH . K 8 HOH C 5 23 23 HOH HOH . K 8 HOH C 6 28 28 HOH HOH . K 8 HOH C 7 35 35 HOH HOH . K 8 HOH C 8 56 56 HOH HOH . K 8 HOH C 9 61 61 HOH HOH . K 8 HOH C 10 62 62 HOH HOH . K 8 HOH C 11 68 68 HOH HOH . K 8 HOH C 12 81 81 HOH HOH . K 8 HOH C 13 82 82 HOH HOH . K 8 HOH C 14 97 97 HOH HOH . K 8 HOH C 15 98 98 HOH HOH . K 8 HOH C 16 104 104 HOH HOH . K 8 HOH C 17 106 106 HOH HOH . K 8 HOH C 18 110 110 HOH HOH . K 8 HOH C 19 112 112 HOH HOH . K 8 HOH C 20 113 113 HOH HOH . K 8 HOH C 21 128 128 HOH HOH . K 8 HOH C 22 136 136 HOH HOH . K 8 HOH C 23 139 139 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 5 _atom_site.Cartn_x 36.034 _atom_site.Cartn_y -37.85 _atom_site.Cartn_z -18.426 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 58.41 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 833 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #