data_3RRJ
#
_model_server_result.job_id            FE_tViEC-W96VSrJUqud-w 
_model_server_result.datetime_utc      '2024-10-18 17:24:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3rrj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":492}' 
#
_entry.id    3RRJ 
#
_exptl.entry_id    3RRJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              916.367 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "BIS(ADENOSINE)-5'-PENTAPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3RRJ 
_cell.length_a            121.947 
_cell.length_b            121.947 
_cell.length_c            155.257 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3RRJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        97 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 4 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexadecameric 
_pdbx_struct_assembly.oligomeric_count      16 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4,5,6,7,8 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 
4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 
5 'crystal symmetry operation' 5_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 0 0 155.257 
6 'crystal symmetry operation' 6_556 x,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 155.257 
7 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 155.257 
8 'crystal symmetry operation' 8_556 -y,-x,-z+1 0 -1 0 -1 0 0 0 0 -1 0 0 155.257 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 64 A ASN 52 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.046 ? 
metalc ? metalc2 A O ASP 126 A ASP 114 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.958 ? 
metalc ? metalc3 A OD2 ASP 126 A ASP 114 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.348 ? 
metalc ? metalc4 A OD1 ASP 126 A ASP 114 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.447 ? 
metalc ? metalc5 A O PHE 129 A PHE 117 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.832 ? 
metalc ? metalc6 A O VAL 158 A VAL 146 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.896 ? 
metalc ? metalc7 A O VAL 160 A VAL 148 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.773 ? 
metalc ? metalc8 A OG SER 162 A SER 150 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.927 ? 
#
_chem_comp.formula           'C20 H29 N10 O22 P5' 
_chem_comp.formula_weight    916.367 
_chem_comp.id                AP5 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "BIS(ADENOSINE)-5'-PENTAPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A AP5 doub 13 n n 
PA O2A AP5 sing 14 n n 
PA O3A AP5 sing 15 n n 
PA O5F AP5 sing 16 n n 
O2A HOA2 AP5 sing 17 n n 
O3A PB AP5 sing 18 n n 
PB O1B AP5 doub 19 n n 
PB O2B AP5 sing 20 n n 
PB O3B AP5 sing 21 n n 
O2B HOB2 AP5 sing 22 n n 
O3B PG AP5 sing 23 n n 
PG O1G AP5 doub 24 n n 
PG O2G AP5 sing 25 n n 
PG O3G AP5 sing 26 n n 
O2G HOG2 AP5 sing 27 n n 
O3G PD AP5 sing 28 n n 
PD O1D AP5 doub 29 n n 
PD O2D AP5 sing 30 n n 
PD O3D AP5 sing 31 n n 
O2D HOD2 AP5 sing 32 n n 
O3D PE AP5 sing 33 n n 
PE O1E AP5 doub 34 n n 
PE O2E AP5 sing 35 n n 
PE O5J AP5 sing 36 n n 
O2E HOE2 AP5 sing 37 n n 
O5F C5F AP5 sing 38 n n 
C5F C4F AP5 sing 39 n n 
C5F H51A AP5 sing 40 n n 
C5F H52A AP5 sing 41 n n 
C4F O4F AP5 sing 42 n n 
C4F C3F AP5 sing 43 n n 
C4F H4F AP5 sing 44 n n 
O4F C1F AP5 sing 45 n n 
C3F O3F AP5 sing 46 n n 
C3F C2F AP5 sing 47 n n 
C3F H3F AP5 sing 48 n n 
O3F HO3A AP5 sing 49 n n 
C2F O2F AP5 sing 50 n n 
C2F C1F AP5 sing 51 n n 
C2F H2F AP5 sing 52 n n 
O2F HO2A AP5 sing 53 n n 
C1F N9A AP5 sing 54 n n 
C1F H1F AP5 sing 55 n n 
N9A C8A AP5 sing 56 n y 
N9A C4A AP5 sing 57 n y 
C8A N7A AP5 doub 58 n y 
C8A H8A AP5 sing 59 n n 
N7A C5A AP5 sing 60 n y 
C5A C6A AP5 sing 61 n y 
C5A C4A AP5 doub 62 n y 
C6A N6A AP5 sing 63 n n 
C6A N1A AP5 doub 64 n y 
N6A H61A AP5 sing 65 n n 
N6A H62A AP5 sing 66 n n 
N1A C2A AP5 sing 67 n y 
C2A N3A AP5 doub 68 n y 
C2A H2A AP5 sing 69 n n 
N3A C4A AP5 sing 70 n y 
O5J C5J AP5 sing 71 n n 
C5J C4J AP5 sing 72 n n 
C5J H51B AP5 sing 73 n n 
C5J H52B AP5 sing 74 n n 
C4J O4J AP5 sing 75 n n 
C4J C3J AP5 sing 76 n n 
C4J H4J AP5 sing 77 n n 
O4J C1J AP5 sing 78 n n 
C3J O3J AP5 sing 79 n n 
C3J C2J AP5 sing 80 n n 
C3J H3J AP5 sing 81 n n 
O3J HO3B AP5 sing 82 n n 
C2J O2J AP5 sing 83 n n 
C2J C1J AP5 sing 84 n n 
C2J H2J AP5 sing 85 n n 
O2J HO2B AP5 sing 86 n n 
C1J N9B AP5 sing 87 n n 
C1J H1J AP5 sing 88 n n 
N9B C8B AP5 sing 89 n y 
N9B C4B AP5 sing 90 n y 
C8B N7B AP5 doub 91 n y 
C8B H8B AP5 sing 92 n n 
N7B C5B AP5 sing 93 n y 
C5B C6B AP5 sing 94 n y 
C5B C4B AP5 doub 95 n y 
C6B N6B AP5 sing 96 n n 
C6B N1B AP5 doub 97 n y 
N6B H61B AP5 sing 98 n n 
N6B H62B AP5 sing 99 n n 
N1B C2B AP5 sing 100 n y 
C2B N3B AP5 doub 101 n y 
C2B H2B AP5 sing 102 n n 
N3B C4B AP5 sing 103 n y 
#
_atom_sites.entry_id                     3RRJ 
_atom_sites.fract_transf_matrix[1][1]    0.0082 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0082 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006441 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 K A 1 491 1 K K . 
D 4 AP5 A 1 492 2 AP5 AP5 . 
E 5 GOL A 1 493 3 GOL GOL . 
F 6 HOH A 1 494 1 HOH HOH . 
F 6 HOH A 2 495 2 HOH HOH . 
F 6 HOH A 3 496 3 HOH HOH . 
F 6 HOH A 4 497 4 HOH HOH . 
F 6 HOH A 5 498 5 HOH HOH . 
F 6 HOH A 6 499 6 HOH HOH . 
F 6 HOH A 7 500 7 HOH HOH . 
F 6 HOH A 8 501 8 HOH HOH . 
F 6 HOH A 9 502 9 HOH HOH . 
F 6 HOH A 10 503 10 HOH HOH . 
F 6 HOH A 11 504 11 HOH HOH . 
F 6 HOH A 12 505 12 HOH HOH . 
F 6 HOH A 13 506 13 HOH HOH . 
F 6 HOH A 14 507 14 HOH HOH . 
F 6 HOH A 15 508 15 HOH HOH . 
F 6 HOH A 16 509 16 HOH HOH . 
F 6 HOH A 17 510 17 HOH HOH . 
F 6 HOH A 18 511 18 HOH HOH . 
F 6 HOH A 19 512 19 HOH HOH . 
F 6 HOH A 20 513 20 HOH HOH . 
F 6 HOH A 21 514 21 HOH HOH . 
F 6 HOH A 22 515 22 HOH HOH . 
F 6 HOH A 23 516 23 HOH HOH . 
F 6 HOH A 24 517 24 HOH HOH . 
F 6 HOH A 25 518 25 HOH HOH . 
F 6 HOH A 26 519 26 HOH HOH . 
F 6 HOH A 27 520 27 HOH HOH . 
F 6 HOH A 28 521 28 HOH HOH . 
F 6 HOH A 29 522 29 HOH HOH . 
F 6 HOH A 30 523 30 HOH HOH . 
F 6 HOH A 31 524 31 HOH HOH . 
F 6 HOH A 32 525 32 HOH HOH . 
F 6 HOH A 33 526 33 HOH HOH . 
F 6 HOH A 34 527 34 HOH HOH . 
F 6 HOH A 35 528 35 HOH HOH . 
F 6 HOH A 36 529 36 HOH HOH . 
F 6 HOH A 37 530 37 HOH HOH . 
F 6 HOH A 38 531 38 HOH HOH . 
F 6 HOH A 39 532 39 HOH HOH . 
F 6 HOH A 40 533 40 HOH HOH . 
F 6 HOH A 41 534 41 HOH HOH . 
F 6 HOH A 42 535 42 HOH HOH . 
F 6 HOH A 43 536 43 HOH HOH . 
F 6 HOH A 44 537 44 HOH HOH . 
F 6 HOH A 45 538 45 HOH HOH . 
F 6 HOH A 46 539 46 HOH HOH . 
F 6 HOH A 47 540 47 HOH HOH . 
F 6 HOH A 48 541 48 HOH HOH . 
F 6 HOH A 49 542 49 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA AP5 . . . D 4 51.706 -12.037 62.076 1 67.31 ? PA AP5 492 A 1 
HETATM 2 O O1A AP5 . . . D 4 51.389 -12.28 63.524 1 66.71 ? O1A AP5 492 A 1 
HETATM 3 O O2A AP5 . . . D 4 50.572 -12.393 61.15 1 68.58 ? O2A AP5 492 A 1 
HETATM 4 O O3A AP5 . . . D 4 52.048 -10.496 61.833 1 68.89 ? O3A AP5 492 A 1 
HETATM 5 P PB AP5 . . . D 4 53.474 -9.87 62.137 1 70.83 ? PB AP5 492 A 1 
HETATM 6 O O1B AP5 . . . D 4 54.514 -10.966 62.076 1 73.93 ? O1B AP5 492 A 1 
HETATM 7 O O2B AP5 . . . D 4 53.48 -9.36 63.541 1 72.92 ? O2B AP5 492 A 1 
HETATM 8 O O3B AP5 . . . D 4 53.69 -8.701 61.03 1 73.84 ? O3B AP5 492 A 1 
HETATM 9 P PG AP5 . . . D 4 54.776 -8.705 59.802 1 79.12 ? PG AP5 492 A 1 
HETATM 10 O O1G AP5 . . . D 4 54.099 -8.729 58.441 1 78.83 ? O1G AP5 492 A 1 
HETATM 11 O O2G AP5 . . . D 4 55.72 -9.893 59.904 1 76.55 ? O2G AP5 492 A 1 
HETATM 12 O O3G AP5 . . . D 4 55.531 -7.254 59.844 1 77.53 ? O3G AP5 492 A 1 
HETATM 13 O O5F AP5 . . . D 4 52.952 -12.958 61.703 1 69.63 ? O5F AP5 492 A 1 
HETATM 14 C C5F AP5 . . . D 4 52.66 -14.303 61.439 1 70.82 ? C5F AP5 492 A 1 
HETATM 15 C C4F AP5 . . . D 4 53.926 -15.084 61.169 1 72.13 ? C4F AP5 492 A 1 
HETATM 16 O O4F AP5 . . . D 4 53.521 -16.422 60.976 1 72.55 ? O4F AP5 492 A 1 
HETATM 17 C C3F AP5 . . . D 4 54.679 -14.709 59.888 1 72.67 ? C3F AP5 492 A 1 
HETATM 18 O O3F AP5 . . . D 4 55.613 -13.666 59.991 1 73.32 ? O3F AP5 492 A 1 
HETATM 19 C C2F AP5 . . . D 4 55.344 -16.023 59.512 1 73.35 ? C2F AP5 492 A 1 
HETATM 20 O O2F AP5 . . . D 4 56.562 -16.259 60.194 1 72.6 ? O2F AP5 492 A 1 
HETATM 21 C C1F AP5 . . . D 4 54.268 -17.028 59.921 1 73.01 ? C1F AP5 492 A 1 
HETATM 22 N N9A AP5 . . . D 4 53.458 -17.356 58.71 1 71.52 ? N9A AP5 492 A 1 
HETATM 23 C C8A AP5 . . . D 4 53.022 -16.49 57.71 1 71.76 ? C8A AP5 492 A 1 
HETATM 24 N N7A AP5 . . . D 4 52.342 -17.204 56.788 1 71.16 ? N7A AP5 492 A 1 
HETATM 25 C C5A AP5 . . . D 4 52.353 -18.49 57.186 1 69.18 ? C5A AP5 492 A 1 
HETATM 26 C C6A AP5 . . . D 4 51.812 -19.602 56.605 1 69.82 ? C6A AP5 492 A 1 
HETATM 27 N N6A AP5 . . . D 4 51.279 -19.428 55.401 1 71.24 ? N6A AP5 492 A 1 
HETATM 28 N N1A AP5 . . . D 4 51.948 -20.846 57.213 1 68.46 ? N1A AP5 492 A 1 
HETATM 29 C C2A AP5 . . . D 4 52.636 -20.948 58.404 1 67.29 ? C2A AP5 492 A 1 
HETATM 30 N N3A AP5 . . . D 4 53.173 -19.81 58.979 1 66.39 ? N3A AP5 492 A 1 
HETATM 31 C C4A AP5 . . . D 4 53.037 -18.612 58.376 1 68.2 ? C4A AP5 492 A 1 
#
_model_server_stats.io_time_ms              102 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           31 
#