data_3RRJ
#
_model_server_result.job_id            2Gaz5Wk-YF1JXlY1HSeWrw 
_model_server_result.datetime_utc      '2024-10-18 17:27:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3rrj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":493}' 
#
_entry.id    3RRJ 
#
_exptl.entry_id    3RRJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3RRJ 
_cell.length_a            121.947 
_cell.length_b            121.947 
_cell.length_c            155.257 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3RRJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        97 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 4 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexadecameric 
_pdbx_struct_assembly.oligomeric_count      16 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4,5,6,7,8 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 
4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 
5 'crystal symmetry operation' 5_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 0 0 155.257 
6 'crystal symmetry operation' 6_556 x,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 155.257 
7 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 155.257 
8 'crystal symmetry operation' 8_556 -y,-x,-z+1 0 -1 0 -1 0 0 0 0 -1 0 0 155.257 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 64 A ASN 52 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.046 ? 
metalc ? metalc2 A O ASP 126 A ASP 114 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.958 ? 
metalc ? metalc3 A OD2 ASP 126 A ASP 114 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.348 ? 
metalc ? metalc4 A OD1 ASP 126 A ASP 114 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.447 ? 
metalc ? metalc5 A O PHE 129 A PHE 117 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.832 ? 
metalc ? metalc6 A O VAL 158 A VAL 146 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.896 ? 
metalc ? metalc7 A O VAL 160 A VAL 148 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.773 ? 
metalc ? metalc8 A OG SER 162 A SER 150 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.927 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 220 n n 
C1 C2 GOL sing 221 n n 
C1 H11 GOL sing 222 n n 
C1 H12 GOL sing 223 n n 
O1 HO1 GOL sing 224 n n 
C2 O2 GOL sing 225 n n 
C2 C3 GOL sing 226 n n 
C2 H2 GOL sing 227 n n 
O2 HO2 GOL sing 228 n n 
C3 O3 GOL sing 229 n n 
C3 H31 GOL sing 230 n n 
C3 H32 GOL sing 231 n n 
O3 HO3 GOL sing 232 n n 
#
_atom_sites.entry_id                     3RRJ 
_atom_sites.fract_transf_matrix[1][1]    0.0082 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0082 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006441 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 K A 1 491 1 K K . 
D 4 AP5 A 1 492 2 AP5 AP5 . 
E 5 GOL A 1 493 3 GOL GOL . 
F 6 HOH A 1 494 1 HOH HOH . 
F 6 HOH A 2 495 2 HOH HOH . 
F 6 HOH A 3 496 3 HOH HOH . 
F 6 HOH A 4 497 4 HOH HOH . 
F 6 HOH A 5 498 5 HOH HOH . 
F 6 HOH A 6 499 6 HOH HOH . 
F 6 HOH A 7 500 7 HOH HOH . 
F 6 HOH A 8 501 8 HOH HOH . 
F 6 HOH A 9 502 9 HOH HOH . 
F 6 HOH A 10 503 10 HOH HOH . 
F 6 HOH A 11 504 11 HOH HOH . 
F 6 HOH A 12 505 12 HOH HOH . 
F 6 HOH A 13 506 13 HOH HOH . 
F 6 HOH A 14 507 14 HOH HOH . 
F 6 HOH A 15 508 15 HOH HOH . 
F 6 HOH A 16 509 16 HOH HOH . 
F 6 HOH A 17 510 17 HOH HOH . 
F 6 HOH A 18 511 18 HOH HOH . 
F 6 HOH A 19 512 19 HOH HOH . 
F 6 HOH A 20 513 20 HOH HOH . 
F 6 HOH A 21 514 21 HOH HOH . 
F 6 HOH A 22 515 22 HOH HOH . 
F 6 HOH A 23 516 23 HOH HOH . 
F 6 HOH A 24 517 24 HOH HOH . 
F 6 HOH A 25 518 25 HOH HOH . 
F 6 HOH A 26 519 26 HOH HOH . 
F 6 HOH A 27 520 27 HOH HOH . 
F 6 HOH A 28 521 28 HOH HOH . 
F 6 HOH A 29 522 29 HOH HOH . 
F 6 HOH A 30 523 30 HOH HOH . 
F 6 HOH A 31 524 31 HOH HOH . 
F 6 HOH A 32 525 32 HOH HOH . 
F 6 HOH A 33 526 33 HOH HOH . 
F 6 HOH A 34 527 34 HOH HOH . 
F 6 HOH A 35 528 35 HOH HOH . 
F 6 HOH A 36 529 36 HOH HOH . 
F 6 HOH A 37 530 37 HOH HOH . 
F 6 HOH A 38 531 38 HOH HOH . 
F 6 HOH A 39 532 39 HOH HOH . 
F 6 HOH A 40 533 40 HOH HOH . 
F 6 HOH A 41 534 41 HOH HOH . 
F 6 HOH A 42 535 42 HOH HOH . 
F 6 HOH A 43 536 43 HOH HOH . 
F 6 HOH A 44 537 44 HOH HOH . 
F 6 HOH A 45 538 45 HOH HOH . 
F 6 HOH A 46 539 46 HOH HOH . 
F 6 HOH A 47 540 47 HOH HOH . 
F 6 HOH A 48 541 48 HOH HOH . 
F 6 HOH A 49 542 49 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 5 49.873 -3.825 67.777 1 74.96 ? C1 GOL 493 A 1 
HETATM 2 O O1 GOL . . . E 5 50.818 -4.781 68.179 1 75.23 ? O1 GOL 493 A 1 
HETATM 3 C C2 GOL . . . E 5 48.834 -4.475 66.882 1 76.22 ? C2 GOL 493 A 1 
HETATM 4 O O2 GOL . . . E 5 48.98 -5.873 66.795 1 76.19 ? O2 GOL 493 A 1 
HETATM 5 C C3 GOL . . . E 5 48.965 -3.89 65.488 1 77.58 ? C3 GOL 493 A 1 
HETATM 6 O O3 GOL . . . E 5 48.569 -2.53 65.534 1 79.02 ? O3 GOL 493 A 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          15 
_model_server_stats.element_count           6 
#