data_3RRR
#
_model_server_result.job_id            FpzPzZKQxbGPsmq9Pr-Wjw 
_model_server_result.datetime_utc      '2024-11-25 13:38:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3rrr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"T","auth_seq_id":800}' 
#
_entry.id    3RRR 
#
_exptl.entry_id    3RRR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.17 
_cell.angle_gamma         90 
_cell.entry_id            3RRR 
_cell.length_a            113.17 
_cell.length_b            131.5 
_cell.length_c            164.28 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3RRR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA hexameric 6 author_and_software_defined_assembly 1 
PISA hexameric 6 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,M,N,O,P,Q,R 1 1 
G,H,I,J,K,L,S,T,U,V,W,X 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
? 3 Q N N 
? 3 R N N 
? 3 S N N 
? 3 T N N 
? 3 U N N 
? 3 V N N 
? 3 W N N 
? 3 X N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 12 A CYS 37 1_555 B SG CYS 293 B CYS 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 44 A CYS 69 1_555 B SG CYS 66 B CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf3 B SG CYS 167 B CYS 313 1_555 B SG CYS 197 B CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf4 B SG CYS 176 B CYS 322 1_555 B SG CYS 187 B CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf5 B SG CYS 212 B CYS 358 1_555 B SG CYS 221 B CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf6 B SG CYS 236 B CYS 382 1_555 B SG CYS 247 B CYS 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf7 B SG CYS 270 B CYS 416 1_555 B SG CYS 276 B CYS 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf8 C SG CYS 12 C CYS 37 1_555 D SG CYS 293 D CYS 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf9 C SG CYS 44 C CYS 69 1_555 D SG CYS 66 D CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf10 D SG CYS 167 D CYS 313 1_555 D SG CYS 197 D CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf11 D SG CYS 176 D CYS 322 1_555 D SG CYS 187 D CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf12 D SG CYS 212 D CYS 358 1_555 D SG CYS 221 D CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf13 D SG CYS 236 D CYS 382 1_555 D SG CYS 247 D CYS 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf14 D SG CYS 270 D CYS 416 1_555 D SG CYS 276 D CYS 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf15 E SG CYS 12 E CYS 37 1_555 F SG CYS 293 F CYS 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf16 E SG CYS 44 E CYS 69 1_555 F SG CYS 66 F CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf17 F SG CYS 167 F CYS 313 1_555 F SG CYS 197 F CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf18 F SG CYS 176 F CYS 322 1_555 F SG CYS 187 F CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf19 F SG CYS 212 F CYS 358 1_555 F SG CYS 221 F CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf20 F SG CYS 236 F CYS 382 1_555 F SG CYS 247 F CYS 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf21 F SG CYS 270 F CYS 416 1_555 F SG CYS 276 F CYS 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf22 G SG CYS 12 G CYS 37 1_555 H SG CYS 293 H CYS 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf23 G SG CYS 44 G CYS 69 1_555 H SG CYS 66 H CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf24 H SG CYS 167 H CYS 313 1_555 H SG CYS 197 H CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf25 H SG CYS 176 H CYS 322 1_555 H SG CYS 187 H CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf26 H SG CYS 212 H CYS 358 1_555 H SG CYS 221 H CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf27 H SG CYS 236 H CYS 382 1_555 H SG CYS 247 H CYS 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf28 H SG CYS 270 H CYS 416 1_555 H SG CYS 276 H CYS 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf29 I SG CYS 12 I CYS 37 1_555 J SG CYS 293 L CYS 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf30 I SG CYS 44 I CYS 69 1_555 J SG CYS 66 L CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf31 J SG CYS 167 L CYS 313 1_555 J SG CYS 197 L CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf32 J SG CYS 176 L CYS 322 1_555 J SG CYS 187 L CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf33 J SG CYS 212 L CYS 358 1_555 J SG CYS 221 L CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf34 J SG CYS 236 L CYS 382 1_555 J SG CYS 247 L CYS 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf35 J SG CYS 270 L CYS 416 1_555 J SG CYS 276 L CYS 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf36 K SG CYS 12 M CYS 37 1_555 L SG CYS 293 N CYS 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf37 K SG CYS 44 M CYS 69 1_555 L SG CYS 66 N CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf38 L SG CYS 167 N CYS 313 1_555 L SG CYS 197 N CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf39 L SG CYS 176 N CYS 322 1_555 L SG CYS 187 N CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf40 L SG CYS 212 N CYS 358 1_555 L SG CYS 221 N CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf41 L SG CYS 236 N CYS 382 1_555 L SG CYS 247 N CYS 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf42 L SG CYS 270 N CYS 416 1_555 L SG CYS 276 N CYS 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
covale ? covale1 A ND2 ASN 45 A ASN 70 1_555 M C1 NAG . A NAG 770 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
covale ? covale2 B ND2 ASN 354 B ASN 500 1_555 N C1 NAG . B NAG 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale3 C ND2 ASN 45 C ASN 70 1_555 O C1 NAG . C NAG 770 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
covale ? covale4 D ND2 ASN 354 D ASN 500 1_555 P C1 NAG . D NAG 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? 
covale ? covale5 E ND2 ASN 45 E ASN 70 1_555 Q C1 NAG . E NAG 770 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
covale ? covale6 F ND2 ASN 354 F ASN 500 1_555 R C1 NAG . F NAG 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? 
covale ? covale7 G ND2 ASN 45 G ASN 70 1_555 S C1 NAG . G NAG 770 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
covale ? covale8 H ND2 ASN 354 H ASN 500 1_555 T C1 NAG . H NAG 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale9 I ND2 ASN 45 I ASN 70 1_555 U C1 NAG . I NAG 770 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale10 J ND2 ASN 354 L ASN 500 1_555 V C1 NAG . L NAG 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? 
covale ? covale11 K ND2 ASN 45 M ASN 70 1_555 W C1 NAG . M NAG 770 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
covale ? covale12 L ND2 ASN 354 N ASN 500 1_555 X C1 NAG . N NAG 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 235 n n 
C1 O1 NAG sing 236 n n 
C1 O5 NAG sing 237 n n 
C1 H1 NAG sing 238 n n 
C2 C3 NAG sing 239 n n 
C2 N2 NAG sing 240 n n 
C2 H2 NAG sing 241 n n 
C3 C4 NAG sing 242 n n 
C3 O3 NAG sing 243 n n 
C3 H3 NAG sing 244 n n 
C4 C5 NAG sing 245 n n 
C4 O4 NAG sing 246 n n 
C4 H4 NAG sing 247 n n 
C5 C6 NAG sing 248 n n 
C5 O5 NAG sing 249 n n 
C5 H5 NAG sing 250 n n 
C6 O6 NAG sing 251 n n 
C6 H61 NAG sing 252 n n 
C6 H62 NAG sing 253 n n 
C7 C8 NAG sing 254 n n 
C7 N2 NAG sing 255 n n 
C7 O7 NAG doub 256 n n 
C8 H81 NAG sing 257 n n 
C8 H82 NAG sing 258 n n 
C8 H83 NAG sing 259 n n 
N2 HN2 NAG sing 260 n n 
O1 HO1 NAG sing 261 n n 
O3 HO3 NAG sing 262 n n 
O4 HO4 NAG sing 263 n n 
O6 HO6 NAG sing 264 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     3RRR 
_atom_sites.fract_transf_matrix[1][1]    0.008836 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002068 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007605 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006252 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 3 NAG A 1 770 770 NAG NAG . 
N 3 NAG B 1 800 800 NAG NAG . 
O 3 NAG C 1 770 770 NAG NAG . 
P 3 NAG D 1 800 800 NAG NAG . 
Q 3 NAG E 1 770 770 NAG NAG . 
R 3 NAG F 1 800 800 NAG NAG . 
S 3 NAG G 1 770 770 NAG NAG . 
T 3 NAG H 1 800 800 NAG NAG . 
U 3 NAG I 1 770 770 NAG NAG . 
V 3 NAG L 1 800 800 NAG NAG . 
W 3 NAG M 1 770 770 NAG NAG . 
X 3 NAG N 1 800 800 NAG NAG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . T 3 -15.434 -58.453 -84.011 1 88.61 ? C1 NAG 800 H 1 
HETATM 2 C C2 NAG . . . T 3 -16.358 -57.479 -84.75 1 101.01 ? C2 NAG 800 H 1 
HETATM 3 C C3 NAG . . . T 3 -17.807 -57.974 -84.765 1 107.78 ? C3 NAG 800 H 1 
HETATM 4 C C4 NAG . . . T 3 -17.895 -59.443 -85.179 1 110.08 ? C4 NAG 800 H 1 
HETATM 5 C C5 NAG . . . T 3 -16.959 -60.317 -84.346 1 106.03 ? C5 NAG 800 H 1 
HETATM 6 C C6 NAG . . . T 3 -16.936 -61.758 -84.86 1 109.58 ? C6 NAG 800 H 1 
HETATM 7 C C7 NAG . . . T 3 -15.975 -55.895 -82.894 1 106.37 ? C7 NAG 800 H 1 
HETATM 8 C C8 NAG . . . T 3 -14.848 -54.944 -82.611 1 103.16 ? C8 NAG 800 H 1 
HETATM 9 N N2 NAG . . . T 3 -16.265 -56.138 -84.175 1 104.52 ? N2 NAG 800 H 1 
HETATM 10 O O3 NAG . . . T 3 -18.594 -57.196 -85.643 1 109.41 ? O3 NAG 800 H 1 
HETATM 11 O O4 NAG . . . T 3 -19.223 -59.909 -85.046 1 113.64 ? O4 NAG 800 H 1 
HETATM 12 O O5 NAG . . . T 3 -15.635 -59.813 -84.37 1 96.37 ? O5 NAG 800 H 1 
HETATM 13 O O6 NAG . . . T 3 -16.461 -61.818 -86.191 1 112.68 ? O6 NAG 800 H 1 
HETATM 14 O O7 NAG . . . T 3 -16.596 -56.398 -81.96 1 108.13 ? O7 NAG 800 H 1 
#
_model_server_stats.io_time_ms              49 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    42 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           14 
#