data_3RRY # _model_server_result.job_id zKQqKG1k5FvRfsMyrZ8HVw _model_server_result.datetime_utc '2024-11-02 02:17:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rry # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":190}' # _entry.id 3RRY # _exptl.entry_id 3RRY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3RRY _cell.length_a 88.726 _cell.length_b 88.726 _cell.length_c 135.051 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RRY _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 17 A SER 17 1_555 D MG MG . A MG 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc2 A OE2 GLU 31 A GLU 31 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc3 A OD2 ASP 33 A ASP 33 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc4 A OD1 ASP 33 A ASP 33 1_555 C CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc5 A OG1 THR 35 A THR 35 1_555 D MG MG . A MG 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc6 A O ARG 102 A ARG 102 1_555 F CA CA . A CA 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc7 A OD1 ASP 105 A ASP 105 1_555 F CA CA . A CA 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.809 ? metalc ? metalc8 A OD2 ASP 105 A ASP 105 1_555 F CA CA . A CA 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.951 ? metalc ? metalc9 B O2G GNP . A GNP 190 1_555 D MG MG . A MG 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc10 B O2B GNP . A GNP 190 1_555 D MG MG . A MG 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc11 D MG MG . A MG 192 1_555 G O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc12 D MG MG . A MG 192 1_555 G O HOH . A HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc13 E MG MG . A MG 194 1_555 G O HOH . A HOH 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? metalc ? metalc14 E MG MG . A MG 194 1_555 G O HOH . A HOH 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? metalc ? metalc15 C CA CA . A CA 202 1_555 G O HOH . A HOH 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 3RRY _atom_sites.fract_transf_matrix[1][1] 0.011271 _atom_sites.fract_transf_matrix[1][2] 0.006507 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013014 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007405 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GNP A 1 190 190 GNP GNP . C 3 CA A 1 202 202 CA CA . D 4 MG A 1 192 192 MG MG . E 4 MG A 1 194 194 MG MG . F 3 CA A 1 191 191 CA CA . G 5 HOH A 1 301 301 HOH HOH . G 5 HOH A 2 302 302 HOH HOH . G 5 HOH A 3 303 303 HOH HOH . G 5 HOH A 4 304 304 HOH HOH . G 5 HOH A 5 305 305 HOH HOH . G 5 HOH A 6 306 306 HOH HOH . G 5 HOH A 7 307 307 HOH HOH . G 5 HOH A 8 308 308 HOH HOH . G 5 HOH A 9 309 309 HOH HOH . G 5 HOH A 10 310 310 HOH HOH . G 5 HOH A 11 311 311 HOH HOH . G 5 HOH A 12 312 312 HOH HOH . G 5 HOH A 13 313 313 HOH HOH . G 5 HOH A 14 314 314 HOH HOH . G 5 HOH A 15 315 315 HOH HOH . G 5 HOH A 16 316 316 HOH HOH . G 5 HOH A 17 317 317 HOH HOH . G 5 HOH A 18 318 318 HOH HOH . G 5 HOH A 19 319 319 HOH HOH . G 5 HOH A 20 320 320 HOH HOH . G 5 HOH A 21 321 321 HOH HOH . G 5 HOH A 22 322 322 HOH HOH . G 5 HOH A 23 323 323 HOH HOH . G 5 HOH A 24 324 324 HOH HOH . G 5 HOH A 25 325 325 HOH HOH . G 5 HOH A 26 326 326 HOH HOH . G 5 HOH A 27 327 327 HOH HOH . G 5 HOH A 28 328 328 HOH HOH . G 5 HOH A 29 329 329 HOH HOH . G 5 HOH A 30 330 330 HOH HOH . G 5 HOH A 31 331 331 HOH HOH . G 5 HOH A 32 332 332 HOH HOH . G 5 HOH A 33 333 333 HOH HOH . G 5 HOH A 34 334 334 HOH HOH . G 5 HOH A 35 335 335 HOH HOH . G 5 HOH A 36 336 336 HOH HOH . G 5 HOH A 37 337 337 HOH HOH . G 5 HOH A 38 338 338 HOH HOH . G 5 HOH A 39 339 339 HOH HOH . G 5 HOH A 40 340 340 HOH HOH . G 5 HOH A 41 341 341 HOH HOH . G 5 HOH A 42 342 342 HOH HOH . G 5 HOH A 43 343 343 HOH HOH . G 5 HOH A 44 344 344 HOH HOH . G 5 HOH A 45 345 345 HOH HOH . G 5 HOH A 46 346 346 HOH HOH . G 5 HOH A 47 347 347 HOH HOH . G 5 HOH A 48 348 348 HOH HOH . G 5 HOH A 49 349 349 HOH HOH . G 5 HOH A 50 350 350 HOH HOH . G 5 HOH A 51 351 351 HOH HOH . G 5 HOH A 52 352 352 HOH HOH . G 5 HOH A 53 353 353 HOH HOH . G 5 HOH A 54 354 354 HOH HOH . G 5 HOH A 55 355 355 HOH HOH . G 5 HOH A 56 356 356 HOH HOH . G 5 HOH A 57 357 357 HOH HOH . G 5 HOH A 58 359 359 HOH HOH . G 5 HOH A 59 360 360 HOH HOH . G 5 HOH A 60 361 361 HOH HOH . G 5 HOH A 61 362 362 HOH HOH . G 5 HOH A 62 363 363 HOH HOH . G 5 HOH A 63 364 364 HOH HOH . G 5 HOH A 64 365 365 HOH HOH . G 5 HOH A 65 366 366 HOH HOH . G 5 HOH A 66 368 368 HOH HOH . G 5 HOH A 67 369 369 HOH HOH . G 5 HOH A 68 370 370 HOH HOH . G 5 HOH A 69 371 371 HOH HOH . G 5 HOH A 70 372 372 HOH HOH . G 5 HOH A 71 374 374 HOH HOH . G 5 HOH A 72 375 375 HOH HOH . G 5 HOH A 73 376 376 HOH HOH . G 5 HOH A 74 377 377 HOH HOH . G 5 HOH A 75 378 378 HOH HOH . G 5 HOH A 76 379 379 HOH HOH . G 5 HOH A 77 380 380 HOH HOH . G 5 HOH A 78 381 381 HOH HOH . G 5 HOH A 79 382 382 HOH HOH . G 5 HOH A 80 384 384 HOH HOH . G 5 HOH A 81 385 385 HOH HOH . G 5 HOH A 82 387 387 HOH HOH . G 5 HOH A 83 388 388 HOH HOH . G 5 HOH A 84 390 390 HOH HOH . G 5 HOH A 85 392 392 HOH HOH . G 5 HOH A 86 395 395 HOH HOH . G 5 HOH A 87 396 396 HOH HOH . G 5 HOH A 88 398 398 HOH HOH . G 5 HOH A 89 399 399 HOH HOH . G 5 HOH A 90 400 400 HOH HOH . G 5 HOH A 91 401 401 HOH HOH . G 5 HOH A 92 402 402 HOH HOH . G 5 HOH A 93 403 403 HOH HOH . G 5 HOH A 94 404 404 HOH HOH . G 5 HOH A 95 405 405 HOH HOH . G 5 HOH A 96 406 406 HOH HOH . G 5 HOH A 97 407 407 HOH HOH . G 5 HOH A 98 410 410 HOH HOH . G 5 HOH A 99 411 411 HOH HOH . G 5 HOH A 100 413 413 HOH HOH . G 5 HOH A 101 415 415 HOH HOH . G 5 HOH A 102 416 416 HOH HOH . G 5 HOH A 103 417 417 HOH HOH . G 5 HOH A 104 418 418 HOH HOH . G 5 HOH A 105 420 420 HOH HOH . G 5 HOH A 106 422 422 HOH HOH . G 5 HOH A 107 423 423 HOH HOH . G 5 HOH A 108 428 428 HOH HOH . G 5 HOH A 109 431 431 HOH HOH . G 5 HOH A 110 432 432 HOH HOH . G 5 HOH A 111 433 433 HOH HOH . G 5 HOH A 112 437 437 HOH HOH . G 5 HOH A 113 439 439 HOH HOH . G 5 HOH A 114 442 442 HOH HOH . G 5 HOH A 115 443 443 HOH HOH . G 5 HOH A 116 448 448 HOH HOH . G 5 HOH A 117 455 455 HOH HOH . G 5 HOH A 118 456 456 HOH HOH . G 5 HOH A 119 462 462 HOH HOH . G 5 HOH A 120 540 540 HOH HOH . G 5 HOH A 121 542 542 HOH HOH . G 5 HOH A 122 543 543 HOH HOH . G 5 HOH A 123 545 545 HOH HOH . G 5 HOH A 124 547 547 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . B 2 -9.888 64.678 -67.476 1 23.03 ? PG GNP 190 A 1 HETATM 2 O O1G GNP . . . B 2 -8.914 64.294 -66.372 1 24.73 ? O1G GNP 190 A 1 HETATM 3 O O2G GNP . . . B 2 -10.846 65.727 -67.03 1 23.76 ? O2G GNP 190 A 1 HETATM 4 O O3G GNP . . . B 2 -10.565 63.421 -67.933 1 24.09 ? O3G GNP 190 A 1 HETATM 5 N N3B GNP . . . B 2 -9.033 65.264 -68.723 1 21.04 ? N3B GNP 190 A 1 HETATM 6 P PB GNP . . . B 2 -9.533 65.891 -70.132 1 21.29 ? PB GNP 190 A 1 HETATM 7 O O1B GNP . . . B 2 -9.93 64.846 -71.129 1 20.3 ? O1B GNP 190 A 1 HETATM 8 O O2B GNP . . . B 2 -10.578 66.907 -69.863 1 21.19 ? O2B GNP 190 A 1 HETATM 9 O O3A GNP . . . B 2 -8.3 66.658 -70.707 1 21.47 ? O3A GNP 190 A 1 HETATM 10 P PA GNP . . . B 2 -7.953 68.191 -70.731 1 21.74 ? PA GNP 190 A 1 HETATM 11 O O1A GNP . . . B 2 -8.862 68.913 -71.648 1 21.4 ? O1A GNP 190 A 1 HETATM 12 O O2A GNP . . . B 2 -7.76 68.686 -69.334 1 22.77 ? O2A GNP 190 A 1 HETATM 13 O O5' GNP . . . B 2 -6.566 68.24 -71.481 1 20.68 ? O5' GNP 190 A 1 HETATM 14 C C5' GNP . . . B 2 -5.437 67.52 -70.959 1 22.95 ? C5' GNP 190 A 1 HETATM 15 C C4' GNP . . . B 2 -4.165 68.168 -71.467 1 22.55 ? C4' GNP 190 A 1 HETATM 16 O O4' GNP . . . B 2 -4.129 68.005 -72.909 1 21.84 ? O4' GNP 190 A 1 HETATM 17 C C3' GNP . . . B 2 -4.05 69.673 -71.219 1 23.4 ? C3' GNP 190 A 1 HETATM 18 O O3' GNP . . . B 2 -2.693 70 -70.913 1 23.43 ? O3' GNP 190 A 1 HETATM 19 C C2' GNP . . . B 2 -4.52 70.291 -72.537 1 20.31 ? C2' GNP 190 A 1 HETATM 20 O O2' GNP . . . B 2 -3.915 71.528 -72.853 1 21.8 ? O2' GNP 190 A 1 HETATM 21 C C1' GNP . . . B 2 -4.031 69.259 -73.545 1 23.02 ? C1' GNP 190 A 1 HETATM 22 N N9 GNP . . . B 2 -4.826 69.205 -74.76 1 22.42 ? N9 GNP 190 A 1 HETATM 23 C C8 GNP . . . B 2 -6.18 68.991 -74.869 1 22.19 ? C8 GNP 190 A 1 HETATM 24 N N7 GNP . . . B 2 -6.594 69.007 -76.103 1 21.66 ? N7 GNP 190 A 1 HETATM 25 C C5 GNP . . . B 2 -5.446 69.212 -76.856 1 19.61 ? C5 GNP 190 A 1 HETATM 26 C C6 GNP . . . B 2 -5.288 69.312 -78.253 1 22.91 ? C6 GNP 190 A 1 HETATM 27 O O6 GNP . . . B 2 -6.172 69.215 -79.113 1 23.29 ? O6 GNP 190 A 1 HETATM 28 N N1 GNP . . . B 2 -3.965 69.538 -78.623 1 24.15 ? N1 GNP 190 A 1 HETATM 29 C C2 GNP . . . B 2 -2.921 69.663 -77.728 1 27.04 ? C2 GNP 190 A 1 HETATM 30 N N2 GNP . . . B 2 -1.696 69.873 -78.243 1 27.66 ? N2 GNP 190 A 1 HETATM 31 N N3 GNP . . . B 2 -3.064 69.564 -76.418 1 23.47 ? N3 GNP 190 A 1 HETATM 32 C C4 GNP . . . B 2 -4.348 69.341 -76.05 1 21.6 ? C4 GNP 190 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 32 #