data_3RRZ # _model_server_result.job_id Gw0WjTy_M76vT5pFq5t2xw _model_server_result.datetime_utc '2024-11-24 02:41:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rrz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":190}' # _entry.id 3RRZ # _exptl.entry_id 3RRZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3RRZ _cell.length_a 89.278 _cell.length_b 89.278 _cell.length_c 134.703 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RRZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 17 A SER 17 1_555 J MG MG . A MG 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc2 A O PHE 28 A PHE 28 1_555 K CA CA . A CA 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc3 A OD2 ASP 30 A ASP 30 1_555 K CA CA . A CA 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc4 A OG1 THR 35 A THR 35 1_555 J MG MG . A MG 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc5 A O ARG 102 A ARG 102 1_555 L CA CA . A CA 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc6 A OD1 ASP 105 A ASP 105 1_555 L CA CA . A CA 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? metalc ? metalc7 A OD2 ASP 105 A ASP 105 1_555 L CA CA . A CA 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.04 ? metalc ? metalc8 B O2G GNP . A GNP 190 1_555 J MG MG . A MG 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc9 B O2B GNP . A GNP 190 1_555 J MG MG . A MG 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc10 J MG MG . A MG 192 1_555 O O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc11 J MG MG . A MG 192 1_555 O O HOH . A HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc12 K CA CA . A CA 193 1_555 O O HOH . A HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? metalc ? metalc13 M MG MG . A MG 194 1_555 O O HOH . A HOH 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? metalc ? metalc14 M MG MG . A MG 194 1_555 O O HOH . A HOH 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? metalc ? metalc15 L CA CA . A CA 195 1_555 O O HOH . A HOH 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.151 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 3RRZ _atom_sites.fract_transf_matrix[1][1] 0.011201 _atom_sites.fract_transf_matrix[1][2] 0.006467 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012934 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007424 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GNP A 1 190 190 GNP GNP . C 3 GOL A 1 203 203 GOL GOL . D 3 GOL A 1 217 217 GOL GOL . E 3 GOL A 1 205 205 GOL GOL . F 3 GOL A 1 207 207 GOL GOL . G 3 GOL A 1 218 218 GOL GOL . H 3 GOL A 1 219 219 GOL GOL . I 3 GOL A 1 223 223 GOL GOL . J 4 MG A 1 192 192 MG MG . K 5 CA A 1 193 193 CA CA . L 5 CA A 1 195 195 CA CA . M 4 MG A 1 194 194 MG MG . N 3 GOL A 1 202 202 GOL GOL . O 6 HOH A 1 301 301 HOH HOH . O 6 HOH A 2 302 302 HOH HOH . O 6 HOH A 3 303 303 HOH HOH . O 6 HOH A 4 304 304 HOH HOH . O 6 HOH A 5 305 305 HOH HOH . O 6 HOH A 6 306 306 HOH HOH . O 6 HOH A 7 307 307 HOH HOH . O 6 HOH A 8 308 308 HOH HOH . O 6 HOH A 9 309 309 HOH HOH . O 6 HOH A 10 310 310 HOH HOH . O 6 HOH A 11 311 311 HOH HOH . O 6 HOH A 12 312 312 HOH HOH . O 6 HOH A 13 313 313 HOH HOH . O 6 HOH A 14 314 314 HOH HOH . O 6 HOH A 15 315 315 HOH HOH . O 6 HOH A 16 316 316 HOH HOH . O 6 HOH A 17 317 317 HOH HOH . O 6 HOH A 18 318 318 HOH HOH . O 6 HOH A 19 319 319 HOH HOH . O 6 HOH A 20 320 320 HOH HOH . O 6 HOH A 21 321 321 HOH HOH . O 6 HOH A 22 322 322 HOH HOH . O 6 HOH A 23 323 323 HOH HOH . O 6 HOH A 24 324 324 HOH HOH . O 6 HOH A 25 325 325 HOH HOH . O 6 HOH A 26 326 326 HOH HOH . O 6 HOH A 27 327 327 HOH HOH . O 6 HOH A 28 328 328 HOH HOH . O 6 HOH A 29 329 329 HOH HOH . O 6 HOH A 30 330 330 HOH HOH . O 6 HOH A 31 331 331 HOH HOH . O 6 HOH A 32 332 332 HOH HOH . O 6 HOH A 33 334 334 HOH HOH . O 6 HOH A 34 335 335 HOH HOH . O 6 HOH A 35 336 336 HOH HOH . O 6 HOH A 36 337 337 HOH HOH . O 6 HOH A 37 338 338 HOH HOH . O 6 HOH A 38 339 339 HOH HOH . O 6 HOH A 39 340 340 HOH HOH . O 6 HOH A 40 341 341 HOH HOH . O 6 HOH A 41 342 342 HOH HOH . O 6 HOH A 42 343 343 HOH HOH . O 6 HOH A 43 344 344 HOH HOH . O 6 HOH A 44 345 345 HOH HOH . O 6 HOH A 45 346 346 HOH HOH . O 6 HOH A 46 347 347 HOH HOH . O 6 HOH A 47 349 349 HOH HOH . O 6 HOH A 48 355 355 HOH HOH . O 6 HOH A 49 356 356 HOH HOH . O 6 HOH A 50 357 357 HOH HOH . O 6 HOH A 51 358 358 HOH HOH . O 6 HOH A 52 360 360 HOH HOH . O 6 HOH A 53 361 361 HOH HOH . O 6 HOH A 54 362 362 HOH HOH . O 6 HOH A 55 363 363 HOH HOH . O 6 HOH A 56 364 364 HOH HOH . O 6 HOH A 57 367 367 HOH HOH . O 6 HOH A 58 370 370 HOH HOH . O 6 HOH A 59 371 371 HOH HOH . O 6 HOH A 60 372 372 HOH HOH . O 6 HOH A 61 373 373 HOH HOH . O 6 HOH A 62 376 376 HOH HOH . O 6 HOH A 63 380 380 HOH HOH . O 6 HOH A 64 385 385 HOH HOH . O 6 HOH A 65 389 389 HOH HOH . O 6 HOH A 66 390 390 HOH HOH . O 6 HOH A 67 391 391 HOH HOH . O 6 HOH A 68 393 393 HOH HOH . O 6 HOH A 69 400 400 HOH HOH . O 6 HOH A 70 407 407 HOH HOH . O 6 HOH A 71 410 410 HOH HOH . O 6 HOH A 72 415 415 HOH HOH . O 6 HOH A 73 419 419 HOH HOH . O 6 HOH A 74 421 421 HOH HOH . O 6 HOH A 75 425 425 HOH HOH . O 6 HOH A 76 432 432 HOH HOH . O 6 HOH A 77 434 434 HOH HOH . O 6 HOH A 78 447 447 HOH HOH . O 6 HOH A 79 453 453 HOH HOH . O 6 HOH A 80 470 470 HOH HOH . O 6 HOH A 81 473 473 HOH HOH . O 6 HOH A 82 488 488 HOH HOH . O 6 HOH A 83 489 489 HOH HOH . O 6 HOH A 84 490 490 HOH HOH . O 6 HOH A 85 491 491 HOH HOH . O 6 HOH A 86 492 492 HOH HOH . O 6 HOH A 87 493 493 HOH HOH . O 6 HOH A 88 494 494 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . B 2 -10.268 64.928 -67.346 1 19.84 ? PG GNP 190 A 1 HETATM 2 O O1G GNP . . . B 2 -9.308 64.61 -66.22 1 21.3 ? O1G GNP 190 A 1 HETATM 3 O O2G GNP . . . B 2 -11.283 65.942 -66.944 1 21.63 ? O2G GNP 190 A 1 HETATM 4 O O3G GNP . . . B 2 -10.872 63.651 -67.845 1 23.05 ? O3G GNP 190 A 1 HETATM 5 N N3B GNP . . . B 2 -9.383 65.546 -68.566 1 18.36 ? N3B GNP 190 A 1 HETATM 6 P PB GNP . . . B 2 -9.893 66.167 -69.977 1 19.2 ? PB GNP 190 A 1 HETATM 7 O O1B GNP . . . B 2 -10.199 65.077 -70.954 1 18.94 ? O1B GNP 190 A 1 HETATM 8 O O2B GNP . . . B 2 -10.976 67.117 -69.708 1 18.26 ? O2B GNP 190 A 1 HETATM 9 O O3A GNP . . . B 2 -8.665 66.955 -70.531 1 18.29 ? O3A GNP 190 A 1 HETATM 10 P PA GNP . . . B 2 -8.391 68.505 -70.56 1 19.42 ? PA GNP 190 A 1 HETATM 11 O O1A GNP . . . B 2 -9.339 69.162 -71.465 1 18.5 ? O1A GNP 190 A 1 HETATM 12 O O2A GNP . . . B 2 -8.299 68.981 -69.154 1 22.66 ? O2A GNP 190 A 1 HETATM 13 O O5' GNP . . . B 2 -6.984 68.637 -71.259 1 19.01 ? O5' GNP 190 A 1 HETATM 14 C C5' GNP . . . B 2 -5.839 67.994 -70.7 1 18.75 ? C5' GNP 190 A 1 HETATM 15 C C4' GNP . . . B 2 -4.573 68.645 -71.225 1 19.93 ? C4' GNP 190 A 1 HETATM 16 O O4' GNP . . . B 2 -4.497 68.432 -72.655 1 21.35 ? O4' GNP 190 A 1 HETATM 17 C C3' GNP . . . B 2 -4.493 70.157 -71.015 1 20.83 ? C3' GNP 190 A 1 HETATM 18 O O3' GNP . . . B 2 -3.142 70.51 -70.684 1 21.99 ? O3' GNP 190 A 1 HETATM 19 C C2' GNP . . . B 2 -4.96 70.719 -72.355 1 20.14 ? C2' GNP 190 A 1 HETATM 20 O O2' GNP . . . B 2 -4.425 72.003 -72.671 1 20.34 ? O2' GNP 190 A 1 HETATM 21 C C1' GNP . . . B 2 -4.442 69.667 -73.334 1 18.6 ? C1' GNP 190 A 1 HETATM 22 N N9 GNP . . . B 2 -5.229 69.581 -74.569 1 19.85 ? N9 GNP 190 A 1 HETATM 23 C C8 GNP . . . B 2 -6.587 69.356 -74.672 1 18.86 ? C8 GNP 190 A 1 HETATM 24 N N7 GNP . . . B 2 -6.997 69.348 -75.906 1 17.41 ? N7 GNP 190 A 1 HETATM 25 C C5 GNP . . . B 2 -5.862 69.563 -76.67 1 18.2 ? C5 GNP 190 A 1 HETATM 26 C C6 GNP . . . B 2 -5.718 69.661 -78.07 1 17.2 ? C6 GNP 190 A 1 HETATM 27 O O6 GNP . . . B 2 -6.577 69.557 -78.957 1 17.76 ? O6 GNP 190 A 1 HETATM 28 N N1 GNP . . . B 2 -4.396 69.903 -78.445 1 20.32 ? N1 GNP 190 A 1 HETATM 29 C C2 GNP . . . B 2 -3.361 70.041 -77.557 1 21.85 ? C2 GNP 190 A 1 HETATM 30 N N2 GNP . . . B 2 -2.155 70.263 -78.121 1 21.8 ? N2 GNP 190 A 1 HETATM 31 N N3 GNP . . . B 2 -3.484 69.952 -76.234 1 19.2 ? N3 GNP 190 A 1 HETATM 32 C C4 GNP . . . B 2 -4.766 69.717 -75.856 1 18.96 ? C4 GNP 190 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 364 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 32 #