data_3RS2 # _model_server_result.job_id q5moBOqB7T-l1dlDhxRhew _model_server_result.datetime_utc '2024-11-06 22:18:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rs2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":190}' # _entry.id 3RS2 # _exptl.entry_id 3RS2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3RS2 _cell.length_a 88.323 _cell.length_b 88.323 _cell.length_c 133.91 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RS2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 17 A SER 17 1_555 F MG MG . A MG 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc2 A O PHE 28 A PHE 28 1_555 D CA CA . A CA 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc3 A OD2 ASP 30 A ASP 30 1_555 D CA CA . A CA 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc4 A OG1 THR 35 A THR 35 1_555 F MG MG . A MG 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc5 A O ARG 102 A ARG 102 1_555 E CA CA . A CA 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc6 A OD1 ASP 105 A ASP 105 1_555 E CA CA . A CA 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc7 B O2G GNP . A GNP 190 1_555 F MG MG . A MG 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc8 B O2B GNP . A GNP 190 1_555 F MG MG . A MG 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc9 F MG MG . A MG 192 1_555 I O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc10 F MG MG . A MG 192 1_555 I O HOH . A HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc11 D CA CA . A CA 193 1_555 I O HOH . A HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc12 G MG MG . A MG 194 1_555 I O HOH . A HOH 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.722 ? metalc ? metalc13 G MG MG . A MG 194 1_555 I O HOH . A HOH 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? metalc ? metalc14 G MG MG . A MG 194 1_555 I O HOH . A HOH 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.995 ? metalc ? metalc15 E CA CA . A CA 195 1_555 I O HOH . A HOH 393 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.012 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 137 n n PG O2G GNP sing 138 n n PG O3G GNP sing 139 n n PG N3B GNP sing 140 n n O2G HOG2 GNP sing 141 n n O3G HOG3 GNP sing 142 n n N3B PB GNP sing 143 n n N3B HNB3 GNP sing 144 n n PB O1B GNP doub 145 n n PB O2B GNP sing 146 n n PB O3A GNP sing 147 n n O2B HOB2 GNP sing 148 n n O3A PA GNP sing 149 n n PA O1A GNP doub 150 n n PA O2A GNP sing 151 n n PA O5' GNP sing 152 n n O2A HOA2 GNP sing 153 n n O5' C5' GNP sing 154 n n C5' C4' GNP sing 155 n n C5' "H5'2" GNP sing 156 n n C5' "H5'1" GNP sing 157 n n C4' O4' GNP sing 158 n n C4' C3' GNP sing 159 n n C4' H4' GNP sing 160 n n O4' C1' GNP sing 161 n n C3' O3' GNP sing 162 n n C3' C2' GNP sing 163 n n C3' H3' GNP sing 164 n n O3' HO3' GNP sing 165 n n C2' O2' GNP sing 166 n n C2' C1' GNP sing 167 n n C2' H2' GNP sing 168 n n O2' HO2' GNP sing 169 n n C1' N9 GNP sing 170 n n C1' H1' GNP sing 171 n n N9 C8 GNP sing 172 n y N9 C4 GNP sing 173 n y C8 N7 GNP doub 174 n y C8 H8 GNP sing 175 n n N7 C5 GNP sing 176 n y C5 C6 GNP sing 177 n y C5 C4 GNP doub 178 n y C6 O6 GNP doub 179 n n C6 N1 GNP sing 180 n y N1 C2 GNP sing 181 n y N1 HN1 GNP sing 182 n n C2 N2 GNP sing 183 n n C2 N3 GNP doub 184 n y N2 HN21 GNP sing 185 n n N2 HN22 GNP sing 186 n n N3 C4 GNP sing 187 n y # _atom_sites.entry_id 3RS2 _atom_sites.fract_transf_matrix[1][1] 0.011322 _atom_sites.fract_transf_matrix[1][2] 0.006537 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013074 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007468 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GNP A 1 190 190 GNP GNP . C 3 ETF A 1 201 201 ETF ETF . D 4 CA A 1 193 193 CA CA . E 4 CA A 1 195 195 CA CA . F 5 MG A 1 192 192 MG MG . G 5 MG A 1 194 194 MG MG . H 3 ETF A 1 202 202 ETF ETF . I 6 HOH A 1 301 301 HOH HOH . I 6 HOH A 2 302 302 HOH HOH . I 6 HOH A 3 303 303 HOH HOH . I 6 HOH A 4 304 304 HOH HOH . I 6 HOH A 5 305 305 HOH HOH . I 6 HOH A 6 306 306 HOH HOH . I 6 HOH A 7 307 307 HOH HOH . I 6 HOH A 8 308 308 HOH HOH . I 6 HOH A 9 309 309 HOH HOH . I 6 HOH A 10 310 310 HOH HOH . I 6 HOH A 11 311 311 HOH HOH . I 6 HOH A 12 312 312 HOH HOH . I 6 HOH A 13 313 313 HOH HOH . I 6 HOH A 14 314 314 HOH HOH . I 6 HOH A 15 315 315 HOH HOH . I 6 HOH A 16 316 316 HOH HOH . I 6 HOH A 17 317 317 HOH HOH . I 6 HOH A 18 318 318 HOH HOH . I 6 HOH A 19 319 319 HOH HOH . I 6 HOH A 20 320 320 HOH HOH . I 6 HOH A 21 321 321 HOH HOH . I 6 HOH A 22 322 322 HOH HOH . I 6 HOH A 23 323 323 HOH HOH . I 6 HOH A 24 324 324 HOH HOH . I 6 HOH A 25 325 325 HOH HOH . I 6 HOH A 26 326 326 HOH HOH . I 6 HOH A 27 327 327 HOH HOH . I 6 HOH A 28 328 328 HOH HOH . I 6 HOH A 29 329 329 HOH HOH . I 6 HOH A 30 330 330 HOH HOH . I 6 HOH A 31 331 331 HOH HOH . I 6 HOH A 32 332 332 HOH HOH . I 6 HOH A 33 333 333 HOH HOH . I 6 HOH A 34 334 334 HOH HOH . I 6 HOH A 35 335 335 HOH HOH . I 6 HOH A 36 336 336 HOH HOH . I 6 HOH A 37 337 337 HOH HOH . I 6 HOH A 38 338 338 HOH HOH . I 6 HOH A 39 339 339 HOH HOH . I 6 HOH A 40 340 340 HOH HOH . I 6 HOH A 41 341 341 HOH HOH . I 6 HOH A 42 342 342 HOH HOH . I 6 HOH A 43 344 344 HOH HOH . I 6 HOH A 44 345 345 HOH HOH . I 6 HOH A 45 346 346 HOH HOH . I 6 HOH A 46 347 347 HOH HOH . I 6 HOH A 47 348 348 HOH HOH . I 6 HOH A 48 349 349 HOH HOH . I 6 HOH A 49 350 350 HOH HOH . I 6 HOH A 50 351 351 HOH HOH . I 6 HOH A 51 352 352 HOH HOH . I 6 HOH A 52 353 353 HOH HOH . I 6 HOH A 53 354 354 HOH HOH . I 6 HOH A 54 355 355 HOH HOH . I 6 HOH A 55 356 356 HOH HOH . I 6 HOH A 56 357 357 HOH HOH . I 6 HOH A 57 358 358 HOH HOH . I 6 HOH A 58 359 359 HOH HOH . I 6 HOH A 59 360 360 HOH HOH . I 6 HOH A 60 361 361 HOH HOH . I 6 HOH A 61 362 362 HOH HOH . I 6 HOH A 62 364 364 HOH HOH . I 6 HOH A 63 365 365 HOH HOH . I 6 HOH A 64 366 366 HOH HOH . I 6 HOH A 65 367 367 HOH HOH . I 6 HOH A 66 368 368 HOH HOH . I 6 HOH A 67 369 369 HOH HOH . I 6 HOH A 68 370 370 HOH HOH . I 6 HOH A 69 371 371 HOH HOH . I 6 HOH A 70 372 372 HOH HOH . I 6 HOH A 71 373 373 HOH HOH . I 6 HOH A 72 374 374 HOH HOH . I 6 HOH A 73 375 375 HOH HOH . I 6 HOH A 74 377 377 HOH HOH . I 6 HOH A 75 378 378 HOH HOH . I 6 HOH A 76 380 380 HOH HOH . I 6 HOH A 77 382 382 HOH HOH . I 6 HOH A 78 384 384 HOH HOH . I 6 HOH A 79 385 385 HOH HOH . I 6 HOH A 80 386 386 HOH HOH . I 6 HOH A 81 387 387 HOH HOH . I 6 HOH A 82 388 388 HOH HOH . I 6 HOH A 83 389 389 HOH HOH . I 6 HOH A 84 390 390 HOH HOH . I 6 HOH A 85 392 392 HOH HOH . I 6 HOH A 86 393 393 HOH HOH . I 6 HOH A 87 396 396 HOH HOH . I 6 HOH A 88 397 397 HOH HOH . I 6 HOH A 89 399 399 HOH HOH . I 6 HOH A 90 401 401 HOH HOH . I 6 HOH A 91 402 402 HOH HOH . I 6 HOH A 92 403 403 HOH HOH . I 6 HOH A 93 404 404 HOH HOH . I 6 HOH A 94 411 411 HOH HOH . I 6 HOH A 95 414 414 HOH HOH . I 6 HOH A 96 420 420 HOH HOH . I 6 HOH A 97 423 423 HOH HOH . I 6 HOH A 98 424 424 HOH HOH . I 6 HOH A 99 427 427 HOH HOH . I 6 HOH A 100 432 432 HOH HOH . I 6 HOH A 101 437 437 HOH HOH . I 6 HOH A 102 441 441 HOH HOH . I 6 HOH A 103 443 443 HOH HOH . I 6 HOH A 104 451 451 HOH HOH . I 6 HOH A 105 452 452 HOH HOH . I 6 HOH A 106 456 456 HOH HOH . I 6 HOH A 107 457 457 HOH HOH . I 6 HOH A 108 465 465 HOH HOH . I 6 HOH A 109 532 532 HOH HOH . I 6 HOH A 110 533 533 HOH HOH . I 6 HOH A 111 534 534 HOH HOH . I 6 HOH A 112 535 535 HOH HOH . I 6 HOH A 113 536 536 HOH HOH . I 6 HOH A 114 537 537 HOH HOH . I 6 HOH A 115 538 538 HOH HOH . I 6 HOH A 116 539 539 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . B 2 -9.753 64.34 -66.926 1 24.07 ? PG GNP 190 A 1 HETATM 2 O O1G GNP . . . B 2 -8.794 63.965 -65.821 1 24.11 ? O1G GNP 190 A 1 HETATM 3 O O2G GNP . . . B 2 -10.708 65.392 -66.437 1 22.88 ? O2G GNP 190 A 1 HETATM 4 O O3G GNP . . . B 2 -10.374 63.058 -67.414 1 28.49 ? O3G GNP 190 A 1 HETATM 5 N N3B GNP . . . B 2 -8.883 64.965 -68.137 1 19.19 ? N3B GNP 190 A 1 HETATM 6 P PB GNP . . . B 2 -9.361 65.581 -69.537 1 20.28 ? PB GNP 190 A 1 HETATM 7 O O1B GNP . . . B 2 -9.745 64.504 -70.479 1 19.25 ? O1B GNP 190 A 1 HETATM 8 O O2B GNP . . . B 2 -10.401 66.595 -69.317 1 18.31 ? O2B GNP 190 A 1 HETATM 9 O O3A GNP . . . B 2 -8.132 66.311 -70.113 1 18.67 ? O3A GNP 190 A 1 HETATM 10 P PA GNP . . . B 2 -7.85 67.837 -70.116 1 22.12 ? PA GNP 190 A 1 HETATM 11 O O1A GNP . . . B 2 -8.781 68.592 -70.968 1 21.75 ? O1A GNP 190 A 1 HETATM 12 O O2A GNP . . . B 2 -7.655 68.362 -68.74 1 22.37 ? O2A GNP 190 A 1 HETATM 13 O O5' GNP . . . B 2 -6.454 67.941 -70.837 1 20.12 ? O5' GNP 190 A 1 HETATM 14 C C5' GNP . . . B 2 -5.335 67.223 -70.337 1 21.19 ? C5' GNP 190 A 1 HETATM 15 C C4' GNP . . . B 2 -4.058 67.855 -70.854 1 22.09 ? C4' GNP 190 A 1 HETATM 16 O O4' GNP . . . B 2 -3.993 67.672 -72.284 1 22.37 ? O4' GNP 190 A 1 HETATM 17 C C3' GNP . . . B 2 -3.927 69.363 -70.628 1 21.28 ? C3' GNP 190 A 1 HETATM 18 O O3' GNP . . . B 2 -2.577 69.658 -70.34 1 21.97 ? O3' GNP 190 A 1 HETATM 19 C C2' GNP . . . B 2 -4.343 69.97 -71.966 1 20.3 ? C2' GNP 190 A 1 HETATM 20 O O2' GNP . . . B 2 -3.758 71.229 -72.239 1 20.24 ? O2' GNP 190 A 1 HETATM 21 C C1' GNP . . . B 2 -3.839 68.914 -72.938 1 20.3 ? C1' GNP 190 A 1 HETATM 22 N N9 GNP . . . B 2 -4.64 68.878 -74.152 1 21.3 ? N9 GNP 190 A 1 HETATM 23 C C8 GNP . . . B 2 -6.003 68.677 -74.251 1 20.71 ? C8 GNP 190 A 1 HETATM 24 N N7 GNP . . . B 2 -6.426 68.718 -75.481 1 19.49 ? N7 GNP 190 A 1 HETATM 25 C C5 GNP . . . B 2 -5.292 68.944 -76.237 1 18.77 ? C5 GNP 190 A 1 HETATM 26 C C6 GNP . . . B 2 -5.132 69.081 -77.635 1 18.72 ? C6 GNP 190 A 1 HETATM 27 O O6 GNP . . . B 2 -5.985 69.02 -78.525 1 20.59 ? O6 GNP 190 A 1 HETATM 28 N N1 GNP . . . B 2 -3.801 69.313 -77.986 1 19.84 ? N1 GNP 190 A 1 HETATM 29 C C2 GNP . . . B 2 -2.757 69.406 -77.092 1 25.93 ? C2 GNP 190 A 1 HETATM 30 N N2 GNP . . . B 2 -1.549 69.637 -77.613 1 22.55 ? N2 GNP 190 A 1 HETATM 31 N N3 GNP . . . B 2 -2.895 69.287 -75.78 1 22.08 ? N3 GNP 190 A 1 HETATM 32 C C4 GNP . . . B 2 -4.183 69.049 -75.431 1 19.41 ? C4 GNP 190 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 32 #