data_3RS3 # _model_server_result.job_id 3W6ueDRFqDyCQehpXEIsJg _model_server_result.datetime_utc '2024-11-02 00:30:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rs3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":190}' # _entry.id 3RS3 # _exptl.entry_id 3RS3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3RS3 _cell.length_a 88.328 _cell.length_b 88.328 _cell.length_c 135.128 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RS3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 17 A SER 17 1_555 G MG MG . A MG 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc2 A O PHE 28 A PHE 28 1_555 E CA CA . A CA 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc3 A OD2 ASP 30 A ASP 30 1_555 E CA CA . A CA 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc4 A OG1 THR 35 A THR 35 1_555 G MG MG . A MG 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc5 A O ARG 102 A ARG 102 1_555 F CA CA . A CA 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc6 A O VAL 103 A VAL 103 1_555 H CA CA . A CA 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc7 A OD2 ASP 105 A ASP 105 1_555 F CA CA . A CA 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? metalc ? metalc8 A OD1 ASP 105 A ASP 105 1_555 F CA CA . A CA 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.108 ? metalc ? metalc9 A OD2 ASP 105 A ASP 105 1_555 H CA CA . A CA 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? metalc ? metalc10 B O2G GNP . A GNP 190 1_555 G MG MG . A MG 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc11 B O2B GNP . A GNP 190 1_555 G MG MG . A MG 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc12 G MG MG . A MG 192 1_555 I O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc13 G MG MG . A MG 192 1_555 I O HOH . A HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc14 E CA CA . A CA 193 1_555 I O HOH . A HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 3RS3 _atom_sites.fract_transf_matrix[1][1] 0.011321 _atom_sites.fract_transf_matrix[1][2] 0.006536 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013073 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0074 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GNP A 1 190 190 GNP GNP . C 3 HEX A 1 201 201 HEX HEX . D 3 HEX A 1 202 202 HEX HEX . E 4 CA A 1 193 193 CA CA . F 4 CA A 1 195 195 CA CA . G 5 MG A 1 192 192 MG MG . H 4 CA A 1 196 196 CA CA . I 6 HOH A 1 301 301 HOH HOH . I 6 HOH A 2 302 302 HOH HOH . I 6 HOH A 3 303 303 HOH HOH . I 6 HOH A 4 304 304 HOH HOH . I 6 HOH A 5 305 305 HOH HOH . I 6 HOH A 6 306 306 HOH HOH . I 6 HOH A 7 307 307 HOH HOH . I 6 HOH A 8 308 308 HOH HOH . I 6 HOH A 9 309 309 HOH HOH . I 6 HOH A 10 310 310 HOH HOH . I 6 HOH A 11 311 311 HOH HOH . I 6 HOH A 12 312 312 HOH HOH . I 6 HOH A 13 313 313 HOH HOH . I 6 HOH A 14 314 314 HOH HOH . I 6 HOH A 15 315 315 HOH HOH . I 6 HOH A 16 316 316 HOH HOH . I 6 HOH A 17 317 317 HOH HOH . I 6 HOH A 18 318 318 HOH HOH . I 6 HOH A 19 319 319 HOH HOH . I 6 HOH A 20 320 320 HOH HOH . I 6 HOH A 21 321 321 HOH HOH . I 6 HOH A 22 322 322 HOH HOH . I 6 HOH A 23 323 323 HOH HOH . I 6 HOH A 24 324 324 HOH HOH . I 6 HOH A 25 325 325 HOH HOH . I 6 HOH A 26 326 326 HOH HOH . I 6 HOH A 27 327 327 HOH HOH . I 6 HOH A 28 328 328 HOH HOH . I 6 HOH A 29 329 329 HOH HOH . I 6 HOH A 30 330 330 HOH HOH . I 6 HOH A 31 331 331 HOH HOH . I 6 HOH A 32 332 332 HOH HOH . I 6 HOH A 33 333 333 HOH HOH . I 6 HOH A 34 334 334 HOH HOH . I 6 HOH A 35 335 335 HOH HOH . I 6 HOH A 36 336 336 HOH HOH . I 6 HOH A 37 337 337 HOH HOH . I 6 HOH A 38 339 339 HOH HOH . I 6 HOH A 39 340 340 HOH HOH . I 6 HOH A 40 341 341 HOH HOH . I 6 HOH A 41 343 343 HOH HOH . I 6 HOH A 42 345 345 HOH HOH . I 6 HOH A 43 347 347 HOH HOH . I 6 HOH A 44 348 348 HOH HOH . I 6 HOH A 45 350 350 HOH HOH . I 6 HOH A 46 351 351 HOH HOH . I 6 HOH A 47 352 352 HOH HOH . I 6 HOH A 48 353 353 HOH HOH . I 6 HOH A 49 354 354 HOH HOH . I 6 HOH A 50 355 355 HOH HOH . I 6 HOH A 51 358 358 HOH HOH . I 6 HOH A 52 359 359 HOH HOH . I 6 HOH A 53 362 362 HOH HOH . I 6 HOH A 54 363 363 HOH HOH . I 6 HOH A 55 365 365 HOH HOH . I 6 HOH A 56 367 367 HOH HOH . I 6 HOH A 57 370 370 HOH HOH . I 6 HOH A 58 372 372 HOH HOH . I 6 HOH A 59 375 375 HOH HOH . I 6 HOH A 60 378 378 HOH HOH . I 6 HOH A 61 386 386 HOH HOH . I 6 HOH A 62 387 387 HOH HOH . I 6 HOH A 63 392 392 HOH HOH . I 6 HOH A 64 400 400 HOH HOH . I 6 HOH A 65 411 411 HOH HOH . I 6 HOH A 66 416 416 HOH HOH . I 6 HOH A 67 417 417 HOH HOH . I 6 HOH A 68 424 424 HOH HOH . I 6 HOH A 69 454 454 HOH HOH . I 6 HOH A 70 496 496 HOH HOH . I 6 HOH A 71 497 497 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . B 2 -9.803 64.332 -67.629 1 14.21 ? PG GNP 190 A 1 HETATM 2 O O1G GNP . . . B 2 -8.848 63.895 -66.53 1 16.59 ? O1G GNP 190 A 1 HETATM 3 O O2G GNP . . . B 2 -10.693 65.416 -67.155 1 14.86 ? O2G GNP 190 A 1 HETATM 4 O O3G GNP . . . B 2 -10.501 63.091 -68.117 1 17.28 ? O3G GNP 190 A 1 HETATM 5 N N3B GNP . . . B 2 -8.928 64.895 -68.871 1 13.91 ? N3B GNP 190 A 1 HETATM 6 P PB GNP . . . B 2 -9.432 65.557 -70.259 1 12.98 ? PB GNP 190 A 1 HETATM 7 O O1B GNP . . . B 2 -9.816 64.533 -71.268 1 13.09 ? O1B GNP 190 A 1 HETATM 8 O O2B GNP . . . B 2 -10.475 66.559 -69.98 1 11.81 ? O2B GNP 190 A 1 HETATM 9 O O3A GNP . . . B 2 -8.191 66.323 -70.813 1 12.42 ? O3A GNP 190 A 1 HETATM 10 P PA GNP . . . B 2 -7.859 67.86 -70.825 1 13.07 ? PA GNP 190 A 1 HETATM 11 O O1A GNP . . . B 2 -8.774 68.583 -71.716 1 13.24 ? O1A GNP 190 A 1 HETATM 12 O O2A GNP . . . B 2 -7.677 68.314 -69.417 1 14.21 ? O2A GNP 190 A 1 HETATM 13 O O5' GNP . . . B 2 -6.467 67.946 -71.574 1 12.5 ? O5' GNP 190 A 1 HETATM 14 C C5' GNP . . . B 2 -5.345 67.224 -71.062 1 13.51 ? C5' GNP 190 A 1 HETATM 15 C C4' GNP . . . B 2 -4.066 67.871 -71.544 1 13.93 ? C4' GNP 190 A 1 HETATM 16 O O4' GNP . . . B 2 -4.025 67.699 -72.984 1 15.38 ? O4' GNP 190 A 1 HETATM 17 C C3' GNP . . . B 2 -3.93 69.373 -71.301 1 14.1 ? C3' GNP 190 A 1 HETATM 18 O O3' GNP . . . B 2 -2.555 69.673 -71.03 1 16.31 ? O3' GNP 190 A 1 HETATM 19 C C2' GNP . . . B 2 -4.38 69.981 -72.624 1 13.09 ? C2' GNP 190 A 1 HETATM 20 O O2' GNP . . . B 2 -3.791 71.233 -72.92 1 14.13 ? O2' GNP 190 A 1 HETATM 21 C C1' GNP . . . B 2 -3.871 68.942 -73.616 1 13.26 ? C1' GNP 190 A 1 HETATM 22 N N9 GNP . . . B 2 -4.633 68.916 -74.854 1 14.63 ? N9 GNP 190 A 1 HETATM 23 C C8 GNP . . . B 2 -5.989 68.722 -74.96 1 13.21 ? C8 GNP 190 A 1 HETATM 24 N N7 GNP . . . B 2 -6.399 68.762 -76.195 1 11.93 ? N7 GNP 190 A 1 HETATM 25 C C5 GNP . . . B 2 -5.249 68.974 -76.945 1 13.17 ? C5 GNP 190 A 1 HETATM 26 C C6 GNP . . . B 2 -5.071 69.093 -78.337 1 12.75 ? C6 GNP 190 A 1 HETATM 27 O O6 GNP . . . B 2 -5.956 69.047 -79.202 1 13.51 ? O6 GNP 190 A 1 HETATM 28 N N1 GNP . . . B 2 -3.739 69.307 -78.692 1 14.41 ? N1 GNP 190 A 1 HETATM 29 C C2 GNP . . . B 2 -2.71 69.388 -77.782 1 15.35 ? C2 GNP 190 A 1 HETATM 30 N N2 GNP . . . B 2 -1.488 69.6 -78.293 1 18.1 ? N2 GNP 190 A 1 HETATM 31 N N3 GNP . . . B 2 -2.854 69.274 -76.466 1 14.69 ? N3 GNP 190 A 1 HETATM 32 C C4 GNP . . . B 2 -4.15 69.064 -76.126 1 12.68 ? C4 GNP 190 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 32 #