data_3RS4
#
_model_server_result.job_id            6y0tyv3VWtlHh781ns4k-g 
_model_server_result.datetime_utc      '2024-11-24 12:01:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3rs4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":190}' 
#
_entry.id    3RS4 
#
_exptl.entry_id    3RS4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              522.196 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3RS4 
_cell.length_a            88.792 
_cell.length_b            88.792 
_cell.length_c            135.093 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3RS4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 17 A SER 17 1_555 D MG MG . A MG 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? 
metalc ? metalc2 A O PHE 28 A PHE 28 1_555 F CA CA . A CA 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc3 A OD2 ASP 30 A ASP 30 1_555 F CA CA . A CA 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? 
metalc ? metalc4 A OG1 THR 35 A THR 35 1_555 D MG MG . A MG 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? 
metalc ? metalc5 A O ARG 102 A ARG 102 1_555 E CA CA . A CA 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? 
metalc ? metalc6 A OD1 ASP 105 A ASP 105 1_555 E CA CA . A CA 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.811 ? 
metalc ? metalc7 A OD2 ASP 105 A ASP 105 1_555 E CA CA . A CA 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.886 ? 
metalc ? metalc8 B O2G GNP . A GNP 190 1_555 D MG MG . A MG 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc9 B O2B GNP . A GNP 190 1_555 D MG MG . A MG 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? 
metalc ? metalc10 D MG MG . A MG 192 1_555 H O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? 
metalc ? metalc11 D MG MG . A MG 192 1_555 H O HOH . A HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? 
metalc ? metalc12 F CA CA . A CA 193 1_555 H O HOH . A HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? 
metalc ? metalc13 G MG MG . A MG 194 1_555 H O HOH . A HOH 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? 
metalc ? metalc14 G MG MG . A MG 194 1_555 H O HOH . A HOH 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? 
#
_chem_comp.formula           'C10 H17 N6 O13 P3' 
_chem_comp.formula_weight    522.196 
_chem_comp.id                GNP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GNP doub 129 n n 
PG O2G GNP sing 130 n n 
PG O3G GNP sing 131 n n 
PG N3B GNP sing 132 n n 
O2G HOG2 GNP sing 133 n n 
O3G HOG3 GNP sing 134 n n 
N3B PB GNP sing 135 n n 
N3B HNB3 GNP sing 136 n n 
PB O1B GNP doub 137 n n 
PB O2B GNP sing 138 n n 
PB O3A GNP sing 139 n n 
O2B HOB2 GNP sing 140 n n 
O3A PA GNP sing 141 n n 
PA O1A GNP doub 142 n n 
PA O2A GNP sing 143 n n 
PA O5' GNP sing 144 n n 
O2A HOA2 GNP sing 145 n n 
O5' C5' GNP sing 146 n n 
C5' C4' GNP sing 147 n n 
C5' "H5'2" GNP sing 148 n n 
C5' "H5'1" GNP sing 149 n n 
C4' O4' GNP sing 150 n n 
C4' C3' GNP sing 151 n n 
C4' H4' GNP sing 152 n n 
O4' C1' GNP sing 153 n n 
C3' O3' GNP sing 154 n n 
C3' C2' GNP sing 155 n n 
C3' H3' GNP sing 156 n n 
O3' HO3' GNP sing 157 n n 
C2' O2' GNP sing 158 n n 
C2' C1' GNP sing 159 n n 
C2' H2' GNP sing 160 n n 
O2' HO2' GNP sing 161 n n 
C1' N9 GNP sing 162 n n 
C1' H1' GNP sing 163 n n 
N9 C8 GNP sing 164 n y 
N9 C4 GNP sing 165 n y 
C8 N7 GNP doub 166 n y 
C8 H8 GNP sing 167 n n 
N7 C5 GNP sing 168 n y 
C5 C6 GNP sing 169 n y 
C5 C4 GNP doub 170 n y 
C6 O6 GNP doub 171 n n 
C6 N1 GNP sing 172 n y 
N1 C2 GNP sing 173 n y 
N1 HN1 GNP sing 174 n n 
C2 N2 GNP sing 175 n n 
C2 N3 GNP doub 176 n y 
N2 HN21 GNP sing 177 n n 
N2 HN22 GNP sing 178 n n 
N3 C4 GNP sing 179 n y 
#
_atom_sites.entry_id                     3RS4 
_atom_sites.fract_transf_matrix[1][1]    0.011262 
_atom_sites.fract_transf_matrix[1][2]    0.006502 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013005 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007402 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GNP A 1 190 190 GNP GNP . 
C 3 HEZ A 1 201 201 HEZ HEZ . 
D 4 MG A 1 192 192 MG MG . 
E 5 CA A 1 195 195 CA CA . 
F 5 CA A 1 193 193 CA CA . 
G 4 MG A 1 194 194 MG MG . 
H 6 HOH A 1 301 301 HOH HOH . 
H 6 HOH A 2 302 302 HOH HOH . 
H 6 HOH A 3 303 303 HOH HOH . 
H 6 HOH A 4 304 304 HOH HOH . 
H 6 HOH A 5 305 305 HOH HOH . 
H 6 HOH A 6 306 306 HOH HOH . 
H 6 HOH A 7 307 307 HOH HOH . 
H 6 HOH A 8 308 308 HOH HOH . 
H 6 HOH A 9 309 309 HOH HOH . 
H 6 HOH A 10 310 310 HOH HOH . 
H 6 HOH A 11 311 311 HOH HOH . 
H 6 HOH A 12 312 312 HOH HOH . 
H 6 HOH A 13 313 313 HOH HOH . 
H 6 HOH A 14 314 314 HOH HOH . 
H 6 HOH A 15 315 315 HOH HOH . 
H 6 HOH A 16 316 316 HOH HOH . 
H 6 HOH A 17 317 317 HOH HOH . 
H 6 HOH A 18 318 318 HOH HOH . 
H 6 HOH A 19 319 319 HOH HOH . 
H 6 HOH A 20 320 320 HOH HOH . 
H 6 HOH A 21 321 321 HOH HOH . 
H 6 HOH A 22 322 322 HOH HOH . 
H 6 HOH A 23 323 323 HOH HOH . 
H 6 HOH A 24 324 324 HOH HOH . 
H 6 HOH A 25 325 325 HOH HOH . 
H 6 HOH A 26 326 326 HOH HOH . 
H 6 HOH A 27 327 327 HOH HOH . 
H 6 HOH A 28 328 328 HOH HOH . 
H 6 HOH A 29 329 329 HOH HOH . 
H 6 HOH A 30 330 330 HOH HOH . 
H 6 HOH A 31 331 331 HOH HOH . 
H 6 HOH A 32 332 332 HOH HOH . 
H 6 HOH A 33 333 333 HOH HOH . 
H 6 HOH A 34 334 334 HOH HOH . 
H 6 HOH A 35 335 335 HOH HOH . 
H 6 HOH A 36 336 336 HOH HOH . 
H 6 HOH A 37 337 337 HOH HOH . 
H 6 HOH A 38 338 338 HOH HOH . 
H 6 HOH A 39 339 339 HOH HOH . 
H 6 HOH A 40 340 340 HOH HOH . 
H 6 HOH A 41 341 341 HOH HOH . 
H 6 HOH A 42 342 342 HOH HOH . 
H 6 HOH A 43 343 343 HOH HOH . 
H 6 HOH A 44 344 344 HOH HOH . 
H 6 HOH A 45 345 345 HOH HOH . 
H 6 HOH A 46 346 346 HOH HOH . 
H 6 HOH A 47 347 347 HOH HOH . 
H 6 HOH A 48 348 348 HOH HOH . 
H 6 HOH A 49 349 349 HOH HOH . 
H 6 HOH A 50 350 350 HOH HOH . 
H 6 HOH A 51 351 351 HOH HOH . 
H 6 HOH A 52 352 352 HOH HOH . 
H 6 HOH A 53 353 353 HOH HOH . 
H 6 HOH A 54 354 354 HOH HOH . 
H 6 HOH A 55 355 355 HOH HOH . 
H 6 HOH A 56 356 356 HOH HOH . 
H 6 HOH A 57 357 357 HOH HOH . 
H 6 HOH A 58 358 358 HOH HOH . 
H 6 HOH A 59 359 359 HOH HOH . 
H 6 HOH A 60 360 360 HOH HOH . 
H 6 HOH A 61 361 361 HOH HOH . 
H 6 HOH A 62 363 363 HOH HOH . 
H 6 HOH A 63 364 364 HOH HOH . 
H 6 HOH A 64 365 365 HOH HOH . 
H 6 HOH A 65 366 366 HOH HOH . 
H 6 HOH A 66 367 367 HOH HOH . 
H 6 HOH A 67 368 368 HOH HOH . 
H 6 HOH A 68 369 369 HOH HOH . 
H 6 HOH A 69 371 371 HOH HOH . 
H 6 HOH A 70 373 373 HOH HOH . 
H 6 HOH A 71 374 374 HOH HOH . 
H 6 HOH A 72 375 375 HOH HOH . 
H 6 HOH A 73 376 376 HOH HOH . 
H 6 HOH A 74 377 377 HOH HOH . 
H 6 HOH A 75 379 379 HOH HOH . 
H 6 HOH A 76 381 381 HOH HOH . 
H 6 HOH A 77 383 383 HOH HOH . 
H 6 HOH A 78 384 384 HOH HOH . 
H 6 HOH A 79 386 386 HOH HOH . 
H 6 HOH A 80 387 387 HOH HOH . 
H 6 HOH A 81 388 388 HOH HOH . 
H 6 HOH A 82 392 392 HOH HOH . 
H 6 HOH A 83 394 394 HOH HOH . 
H 6 HOH A 84 395 395 HOH HOH . 
H 6 HOH A 85 396 396 HOH HOH . 
H 6 HOH A 86 398 398 HOH HOH . 
H 6 HOH A 87 401 401 HOH HOH . 
H 6 HOH A 88 402 402 HOH HOH . 
H 6 HOH A 89 404 404 HOH HOH . 
H 6 HOH A 90 405 405 HOH HOH . 
H 6 HOH A 91 406 406 HOH HOH . 
H 6 HOH A 92 408 408 HOH HOH . 
H 6 HOH A 93 409 409 HOH HOH . 
H 6 HOH A 94 411 411 HOH HOH . 
H 6 HOH A 95 425 425 HOH HOH . 
H 6 HOH A 96 427 427 HOH HOH . 
H 6 HOH A 97 428 428 HOH HOH . 
H 6 HOH A 98 430 430 HOH HOH . 
H 6 HOH A 99 434 434 HOH HOH . 
H 6 HOH A 100 436 436 HOH HOH . 
H 6 HOH A 101 441 441 HOH HOH . 
H 6 HOH A 102 449 449 HOH HOH . 
H 6 HOH A 103 451 451 HOH HOH . 
H 6 HOH A 104 453 453 HOH HOH . 
H 6 HOH A 105 460 460 HOH HOH . 
H 6 HOH A 106 461 461 HOH HOH . 
H 6 HOH A 107 468 468 HOH HOH . 
H 6 HOH A 108 495 495 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GNP . . . B 2 -9.901 64.664 -67.542 1 15.88 ? PG GNP 190 A 1 
HETATM 2 O O1G GNP . . . B 2 -8.952 64.241 -66.432 1 16.8 ? O1G GNP 190 A 1 
HETATM 3 O O2G GNP . . . B 2 -10.817 65.735 -67.074 1 17.14 ? O2G GNP 190 A 1 
HETATM 4 O O3G GNP . . . B 2 -10.584 63.409 -68.017 1 20.16 ? O3G GNP 190 A 1 
HETATM 5 N N3B GNP . . . B 2 -9.022 65.25 -68.778 1 15.01 ? N3B GNP 190 A 1 
HETATM 6 P PB GNP . . . B 2 -9.513 65.899 -70.178 1 14.69 ? PB GNP 190 A 1 
HETATM 7 O O1B GNP . . . B 2 -9.886 64.849 -71.165 1 13.86 ? O1B GNP 190 A 1 
HETATM 8 O O2B GNP . . . B 2 -10.572 66.87 -69.885 1 12.79 ? O2B GNP 190 A 1 
HETATM 9 O O3A GNP . . . B 2 -8.271 66.66 -70.747 1 12.43 ? O3A GNP 190 A 1 
HETATM 10 P PA GNP . . . B 2 -7.938 68.198 -70.757 1 14.11 ? PA GNP 190 A 1 
HETATM 11 O O1A GNP . . . B 2 -8.851 68.954 -71.625 1 12.74 ? O1A GNP 190 A 1 
HETATM 12 O O2A GNP . . . B 2 -7.785 68.678 -69.359 1 17.4 ? O2A GNP 190 A 1 
HETATM 13 O O5' GNP . . . B 2 -6.544 68.287 -71.512 1 12.67 ? O5' GNP 190 A 1 
HETATM 14 C C5' GNP . . . B 2 -5.417 67.588 -70.993 1 14.66 ? C5' GNP 190 A 1 
HETATM 15 C C4' GNP . . . B 2 -4.148 68.23 -71.516 1 16.08 ? C4' GNP 190 A 1 
HETATM 16 O O4' GNP . . . B 2 -4.081 68.059 -72.957 1 15.45 ? O4' GNP 190 A 1 
HETATM 17 C C3' GNP . . . B 2 -4.018 69.734 -71.27 1 16.54 ? C3' GNP 190 A 1 
HETATM 18 O O3' GNP . . . B 2 -2.653 70.039 -70.971 1 16.94 ? O3' GNP 190 A 1 
HETATM 19 C C2' GNP . . . B 2 -4.447 70.353 -72.606 1 13.26 ? C2' GNP 190 A 1 
HETATM 20 O O2' GNP . . . B 2 -3.835 71.596 -72.903 1 14.85 ? O2' GNP 190 A 1 
HETATM 21 C C1' GNP . . . B 2 -3.96 69.302 -73.608 1 13.89 ? C1' GNP 190 A 1 
HETATM 22 N N9 GNP . . . B 2 -4.75 69.257 -74.836 1 16.76 ? N9 GNP 190 A 1 
HETATM 23 C C8 GNP . . . B 2 -6.112 69.059 -74.936 1 15.02 ? C8 GNP 190 A 1 
HETATM 24 N N7 GNP . . . B 2 -6.53 69.092 -76.168 1 12.56 ? N7 GNP 190 A 1 
HETATM 25 C C5 GNP . . . B 2 -5.39 69.313 -76.931 1 11.68 ? C5 GNP 190 A 1 
HETATM 26 C C6 GNP . . . B 2 -5.21 69.428 -78.33 1 14.58 ? C6 GNP 190 A 1 
HETATM 27 O O6 GNP . . . B 2 -6.053 69.361 -79.223 1 14.72 ? O6 GNP 190 A 1 
HETATM 28 N N1 GNP . . . B 2 -3.882 69.658 -78.689 1 16.16 ? N1 GNP 190 A 1 
HETATM 29 C C2 GNP . . . B 2 -2.851 69.751 -77.784 1 19.08 ? C2 GNP 190 A 1 
HETATM 30 N N2 GNP . . . B 2 -1.627 69.976 -78.287 1 19.76 ? N2 GNP 190 A 1 
HETATM 31 N N3 GNP . . . B 2 -3.002 69.636 -76.475 1 15.29 ? N3 GNP 190 A 1 
HETATM 32 C C4 GNP . . . B 2 -4.291 69.418 -76.118 1 14.26 ? C4 GNP 190 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           32 
#