data_3RS6 # _model_server_result.job_id zylhzxGFohRum-ogOTIRUg _model_server_result.datetime_utc '2024-11-12 20:47:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rs6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":241}' # _entry.id 3RS6 # _exptl.entry_id 3RS6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 408.629 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description '5-bromo-4-chloro-1H-indol-3-yl alpha-D-mannopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3RS6 _cell.length_a 64.55 _cell.length_b 86.69 _cell.length_c 90.28 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RS6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 8 A GLU 8 1_555 B MN MN . A MN 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc2 A OD2 ASP 10 A ASP 10 1_555 B MN MN . A MN 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc3 A OD1 ASP 10 A ASP 10 1_555 C CA CA . A CA 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc4 A OD2 ASP 10 A ASP 10 1_555 C CA CA . A CA 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc5 A O TYR 12 A TYR 12 1_555 C CA CA . A CA 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc6 A OD1 ASN 14 A ASN 14 1_555 C CA CA . A CA 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc7 A OD1 ASP 19 A ASP 19 1_555 B MN MN . A MN 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc8 A OD2 ASP 19 A ASP 19 1_555 C CA CA . A CA 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc9 A NE2 HIS 24 A HIS 24 1_555 B MN MN . A MN 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc10 B MN MN . A MN 238 1_555 E O HOH . A HOH 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc11 B MN MN . A MN 238 1_555 E O HOH . A HOH 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc12 C CA CA . A CA 239 1_555 E O HOH . A HOH 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc13 C CA CA . A CA 239 1_555 E O HOH . A HOH 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? # _chem_comp.formula 'C14 H15 Br Cl N O6' _chem_comp.formula_weight 408.629 _chem_comp.id XMM _chem_comp.mon_nstd_flag n _chem_comp.name '5-bromo-4-chloro-1H-indol-3-yl alpha-D-mannopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms '(2R,3S,4S,5S,6R)-2-(5-BROMO-4-CHLORO-1H-INDOL-3-YLOXY)-TETRAHYDRO-6-(HYDROXYMETHYL)-2H-PYRAN-3,4,5-TRIOL;(5-BROMO-4-CHLORO-3-INDOLYL)-Alpha-D-MANNOSE;5-bromo-4-chloro-1H-indol-3-yl alpha-D-mannoside;5-bromo-4-chloro-1H-indol-3-yl D-mannoside;5-bromo-4-chloro-1H-indol-3-yl mannoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C2 XMM sing 363 n n O2 HO2 XMM sing 364 n n C2 C3 XMM sing 365 n n C2 C1 XMM sing 366 n n C2 H2 XMM sing 367 n n C3 O3 XMM sing 368 n n C3 C4 XMM sing 369 n n C3 H3 XMM sing 370 n n O3 HO3 XMM sing 371 n n C4 O4 XMM sing 372 n n C4 C5 XMM sing 373 n n C4 H4 XMM sing 374 n n O4 HO4 XMM sing 375 n n C5 O5 XMM sing 376 n n C5 C6 XMM sing 377 n n C5 H5 XMM sing 378 n n O5 C1 XMM sing 379 n n C6 O6 XMM sing 380 n n C6 H61 XMM sing 381 n n C6 H62 XMM sing 382 n n O6 HO6 XMM sing 383 n n C1 O1 XMM sing 384 n n C1 H1 XMM sing 385 n n O1 C7 XMM sing 386 n n C7 C8 XMM sing 387 n y C7 C11 XMM doub 388 n y C8 C9 XMM doub 389 n y C8 C10 XMM sing 390 n y C9 N1 XMM sing 391 n y C9 C12 XMM sing 392 n y N1 C11 XMM sing 393 n y N1 HN1 XMM sing 394 n n C11 H11 XMM sing 395 n n C10 CL XMM sing 396 n n C10 C13 XMM doub 397 n y C13 BR XMM sing 398 n n C13 C14 XMM sing 399 n y C14 C12 XMM doub 400 n y C14 H14 XMM sing 401 n n C12 H12 XMM sing 402 n n # _atom_sites.entry_id 3RS6 _atom_sites.fract_transf_matrix[1][1] 0.015492 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011535 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011077 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 238 238 MN MN . C 3 CA A 1 239 239 CA CA . D 4 XMM A 1 241 241 XMM XMM . E 5 HOH A 1 240 240 HOH HOH . E 5 HOH A 2 242 242 HOH HOH . E 5 HOH A 3 243 243 HOH HOH . E 5 HOH A 4 244 244 HOH HOH . E 5 HOH A 5 245 245 HOH HOH . E 5 HOH A 6 246 246 HOH HOH . E 5 HOH A 7 247 247 HOH HOH . E 5 HOH A 8 248 248 HOH HOH . E 5 HOH A 9 249 249 HOH HOH . E 5 HOH A 10 250 250 HOH HOH . E 5 HOH A 11 251 251 HOH HOH . E 5 HOH A 12 252 252 HOH HOH . E 5 HOH A 13 253 253 HOH HOH . E 5 HOH A 14 254 254 HOH HOH . E 5 HOH A 15 255 255 HOH HOH . E 5 HOH A 16 256 256 HOH HOH . E 5 HOH A 17 257 257 HOH HOH . E 5 HOH A 18 258 258 HOH HOH . E 5 HOH A 19 259 259 HOH HOH . E 5 HOH A 20 260 260 HOH HOH . E 5 HOH A 21 261 261 HOH HOH . E 5 HOH A 22 262 262 HOH HOH . E 5 HOH A 23 263 263 HOH HOH . E 5 HOH A 24 264 264 HOH HOH . E 5 HOH A 25 265 265 HOH HOH . E 5 HOH A 26 266 266 HOH HOH . E 5 HOH A 27 267 267 HOH HOH . E 5 HOH A 28 268 268 HOH HOH . E 5 HOH A 29 269 269 HOH HOH . E 5 HOH A 30 270 270 HOH HOH . E 5 HOH A 31 271 271 HOH HOH . E 5 HOH A 32 272 272 HOH HOH . E 5 HOH A 33 273 273 HOH HOH . E 5 HOH A 34 274 274 HOH HOH . E 5 HOH A 35 275 275 HOH HOH . E 5 HOH A 36 276 276 HOH HOH . E 5 HOH A 37 277 277 HOH HOH . E 5 HOH A 38 278 278 HOH HOH . E 5 HOH A 39 279 279 HOH HOH . E 5 HOH A 40 280 280 HOH HOH . E 5 HOH A 41 281 281 HOH HOH . E 5 HOH A 42 282 282 HOH HOH . E 5 HOH A 43 283 283 HOH HOH . E 5 HOH A 44 284 284 HOH HOH . E 5 HOH A 45 285 285 HOH HOH . E 5 HOH A 46 286 286 HOH HOH . E 5 HOH A 47 287 287 HOH HOH . E 5 HOH A 48 288 288 HOH HOH . E 5 HOH A 49 289 289 HOH HOH . E 5 HOH A 50 290 290 HOH HOH . E 5 HOH A 51 291 291 HOH HOH . E 5 HOH A 52 292 292 HOH HOH . E 5 HOH A 53 293 293 HOH HOH . E 5 HOH A 54 294 294 HOH HOH . E 5 HOH A 55 295 295 HOH HOH . E 5 HOH A 56 296 296 HOH HOH . E 5 HOH A 57 297 297 HOH HOH . E 5 HOH A 58 298 298 HOH HOH . E 5 HOH A 59 299 299 HOH HOH . E 5 HOH A 60 300 300 HOH HOH . E 5 HOH A 61 301 301 HOH HOH . E 5 HOH A 62 302 302 HOH HOH . E 5 HOH A 63 303 303 HOH HOH . E 5 HOH A 64 304 304 HOH HOH . E 5 HOH A 65 305 305 HOH HOH . E 5 HOH A 66 306 306 HOH HOH . E 5 HOH A 67 307 307 HOH HOH . E 5 HOH A 68 308 308 HOH HOH . E 5 HOH A 69 309 309 HOH HOH . E 5 HOH A 70 310 310 HOH HOH . E 5 HOH A 71 311 311 HOH HOH . E 5 HOH A 72 312 312 HOH HOH . E 5 HOH A 73 313 313 HOH HOH . E 5 HOH A 74 314 314 HOH HOH . E 5 HOH A 75 315 315 HOH HOH . E 5 HOH A 76 316 316 HOH HOH . E 5 HOH A 77 317 317 HOH HOH . E 5 HOH A 78 318 318 HOH HOH . E 5 HOH A 79 319 319 HOH HOH . E 5 HOH A 80 320 320 HOH HOH . E 5 HOH A 81 321 321 HOH HOH . E 5 HOH A 82 322 322 HOH HOH . E 5 HOH A 83 323 323 HOH HOH . E 5 HOH A 84 324 324 HOH HOH . E 5 HOH A 85 325 325 HOH HOH . E 5 HOH A 86 326 326 HOH HOH . E 5 HOH A 87 327 327 HOH HOH . E 5 HOH A 88 328 328 HOH HOH . E 5 HOH A 89 329 329 HOH HOH . E 5 HOH A 90 330 330 HOH HOH . E 5 HOH A 91 331 331 HOH HOH . E 5 HOH A 92 332 332 HOH HOH . E 5 HOH A 93 333 333 HOH HOH . E 5 HOH A 94 334 334 HOH HOH . E 5 HOH A 95 335 335 HOH HOH . E 5 HOH A 96 336 336 HOH HOH . E 5 HOH A 97 337 337 HOH HOH . E 5 HOH A 98 338 338 HOH HOH . E 5 HOH A 99 339 339 HOH HOH . E 5 HOH A 100 340 340 HOH HOH . E 5 HOH A 101 341 341 HOH HOH . E 5 HOH A 102 342 342 HOH HOH . E 5 HOH A 103 343 343 HOH HOH . E 5 HOH A 104 344 344 HOH HOH . E 5 HOH A 105 345 345 HOH HOH . E 5 HOH A 106 346 346 HOH HOH . E 5 HOH A 107 347 347 HOH HOH . E 5 HOH A 108 348 348 HOH HOH . E 5 HOH A 109 349 349 HOH HOH . E 5 HOH A 110 350 350 HOH HOH . E 5 HOH A 111 351 351 HOH HOH . E 5 HOH A 112 352 352 HOH HOH . E 5 HOH A 113 353 353 HOH HOH . E 5 HOH A 114 354 354 HOH HOH . E 5 HOH A 115 355 355 HOH HOH . E 5 HOH A 116 356 356 HOH HOH . E 5 HOH A 117 357 357 HOH HOH . E 5 HOH A 118 358 358 HOH HOH . E 5 HOH A 119 359 359 HOH HOH . E 5 HOH A 120 360 360 HOH HOH . E 5 HOH A 121 361 361 HOH HOH . E 5 HOH A 122 362 362 HOH HOH . E 5 HOH A 123 363 363 HOH HOH . E 5 HOH A 124 364 364 HOH HOH . E 5 HOH A 125 365 365 HOH HOH . E 5 HOH A 126 366 366 HOH HOH . E 5 HOH A 127 367 367 HOH HOH . E 5 HOH A 128 368 368 HOH HOH . E 5 HOH A 129 369 369 HOH HOH . E 5 HOH A 130 370 370 HOH HOH . E 5 HOH A 131 371 371 HOH HOH . E 5 HOH A 132 372 372 HOH HOH . E 5 HOH A 133 373 373 HOH HOH . E 5 HOH A 134 374 374 HOH HOH . E 5 HOH A 135 375 375 HOH HOH . E 5 HOH A 136 376 376 HOH HOH . E 5 HOH A 137 377 377 HOH HOH . E 5 HOH A 138 378 378 HOH HOH . E 5 HOH A 139 379 379 HOH HOH . E 5 HOH A 140 380 380 HOH HOH . E 5 HOH A 141 381 381 HOH HOH . E 5 HOH A 142 382 382 HOH HOH . E 5 HOH A 143 383 383 HOH HOH . E 5 HOH A 144 384 384 HOH HOH . E 5 HOH A 145 385 385 HOH HOH . E 5 HOH A 146 386 386 HOH HOH . E 5 HOH A 147 387 387 HOH HOH . E 5 HOH A 148 388 388 HOH HOH . E 5 HOH A 149 389 389 HOH HOH . E 5 HOH A 150 390 390 HOH HOH . E 5 HOH A 151 391 391 HOH HOH . E 5 HOH A 152 392 392 HOH HOH . E 5 HOH A 153 393 393 HOH HOH . E 5 HOH A 154 394 394 HOH HOH . E 5 HOH A 155 395 395 HOH HOH . E 5 HOH A 156 396 396 HOH HOH . E 5 HOH A 157 397 397 HOH HOH . E 5 HOH A 158 398 398 HOH HOH . E 5 HOH A 159 399 399 HOH HOH . E 5 HOH A 160 400 400 HOH HOH . E 5 HOH A 161 401 401 HOH HOH . E 5 HOH A 162 402 402 HOH HOH . E 5 HOH A 163 403 403 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 XMM . . . D 4 26.114 23.212 21.84 1 27.59 ? O2 XMM 241 A 1 HETATM 2 C C2 XMM . . . D 4 25.306 24.397 21.855 1 24.42 ? C2 XMM 241 A 1 HETATM 3 C C3 XMM . . . D 4 24.163 24.369 21.039 1 25.68 ? C3 XMM 241 A 1 HETATM 4 O O3 XMM . . . D 4 24.598 24.132 19.629 1 27.97 ? O3 XMM 241 A 1 HETATM 5 C C4 XMM . . . D 4 23.21 23.257 21.539 1 21.85 ? C4 XMM 241 A 1 HETATM 6 O O4 XMM . . . D 4 22.067 23.435 20.801 1 24.16 ? O4 XMM 241 A 1 HETATM 7 C C5 XMM . . . D 4 22.918 23.403 23.007 1 25.42 ? C5 XMM 241 A 1 HETATM 8 O O5 XMM . . . D 4 24.108 23.379 23.83 1 23.75 ? O5 XMM 241 A 1 HETATM 9 C C6 XMM . . . D 4 22.225 22.126 23.501 1 22.64 ? C6 XMM 241 A 1 HETATM 10 O O6 XMM . . . D 4 21.672 22.515 24.71 1 28.81 ? O6 XMM 241 A 1 HETATM 11 C C1 XMM . . . D 4 25.051 24.368 23.364 1 25.68 ? C1 XMM 241 A 1 HETATM 12 O O1 XMM . . . D 4 25.13 25.667 23.513 1 22.14 ? O1 XMM 241 A 1 HETATM 13 C C7 XMM . . . D 4 24.693 26.052 24.665 1 20.52 ? C7 XMM 241 A 1 HETATM 14 C C8 XMM . . . D 4 25.513 26.833 25.561 1 22.23 ? C8 XMM 241 A 1 HETATM 15 C C9 XMM . . . D 4 24.656 27.092 26.678 1 21.73 ? C9 XMM 241 A 1 HETATM 16 N N1 XMM . . . D 4 23.471 26.484 26.457 1 22.75 ? N1 XMM 241 A 1 HETATM 17 C C11 XMM . . . D 4 23.483 25.869 25.232 1 22.82 ? C11 XMM 241 A 1 HETATM 18 C C10 XMM . . . D 4 26.84 27.28 25.52 1 21.07 ? C10 XMM 241 A 1 HETATM 19 CL CL XMM . . . D 4 27.841 26.975 24.095 1 25.11 ? CL XMM 241 A 1 HETATM 20 C C13 XMM . . . D 4 27.317 28.113 26.59 1 22.25 ? C13 XMM 241 A 1 HETATM 21 BR BR XMM . . . D 4 29.072 28.786 26.435 1 26.03 ? BR XMM 241 A 1 HETATM 22 C C14 XMM . . . D 4 26.502 28.289 27.693 1 23.57 ? C14 XMM 241 A 1 HETATM 23 C C12 XMM . . . D 4 25.201 27.788 27.744 1 23.13 ? C12 XMM 241 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 228 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 23 #