data_3RS8 # _model_server_result.job_id b-bkUKMKMgefskB0Yj9SJg _model_server_result.datetime_utc '2024-11-22 10:10:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rs8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":496}' # _entry.id 3RS8 # _exptl.entry_id 3RS8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3RS8 _cell.length_a 122.393 _cell.length_b 122.393 _cell.length_c 155.71 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RS8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 5 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 6 'crystal symmetry operation' 6_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 7 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 8 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 64 A ASN 52 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.886 ? metalc ? metalc2 A O ASP 126 A ASP 114 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.972 ? metalc ? metalc3 A OD2 ASP 126 A ASP 114 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.379 ? metalc ? metalc4 A O PHE 129 A PHE 117 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.775 ? metalc ? metalc5 A O VAL 158 A VAL 146 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.924 ? metalc ? metalc6 A O VAL 160 A VAL 148 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? metalc ? metalc7 A OG SER 162 A SER 150 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.965 ? metalc ? metalc8 D MG MG . A MG 492 1_555 F O1A APR . A APR 494 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc9 D MG MG . A MG 492 1_555 F O1D APR . A APR 494 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc10 D MG MG . A MG 492 1_555 F O5D APR . A APR 494 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc11 D MG MG . A MG 492 1_555 F O4D APR . A APR 494 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc12 D MG MG . A MG 492 1_555 I O HOH . A HOH 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc13 D MG MG . A MG 492 1_555 I O HOH . A HOH 564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 191 n n C1 C2 GOL sing 192 n n C1 H11 GOL sing 193 n n C1 H12 GOL sing 194 n n O1 HO1 GOL sing 195 n n C2 O2 GOL sing 196 n n C2 C3 GOL sing 197 n n C2 H2 GOL sing 198 n n O2 HO2 GOL sing 199 n n C3 O3 GOL sing 200 n n C3 H31 GOL sing 201 n n C3 H32 GOL sing 202 n n O3 HO3 GOL sing 203 n n # _atom_sites.entry_id 3RS8 _atom_sites.fract_transf_matrix[1][1] 0.00817 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00817 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006422 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 K A 1 491 1 K K . D 4 MG A 1 492 2 MG MG . E 5 APR A 1 493 3 APR APR . F 5 APR A 1 494 4 APR APR . G 5 APR A 1 495 5 APR APR . H 6 GOL A 1 496 6 GOL GOL . I 7 HOH A 1 497 2 HOH HOH . I 7 HOH A 2 498 3 HOH HOH . I 7 HOH A 3 499 4 HOH HOH . I 7 HOH A 4 500 5 HOH HOH . I 7 HOH A 5 501 6 HOH HOH . I 7 HOH A 6 502 7 HOH HOH . I 7 HOH A 7 503 8 HOH HOH . I 7 HOH A 8 504 9 HOH HOH . I 7 HOH A 9 505 10 HOH HOH . I 7 HOH A 10 506 11 HOH HOH . I 7 HOH A 11 507 12 HOH HOH . I 7 HOH A 12 508 13 HOH HOH . I 7 HOH A 13 509 14 HOH HOH . I 7 HOH A 14 510 15 HOH HOH . I 7 HOH A 15 511 16 HOH HOH . I 7 HOH A 16 512 17 HOH HOH . I 7 HOH A 17 513 18 HOH HOH . I 7 HOH A 18 514 19 HOH HOH . I 7 HOH A 19 515 20 HOH HOH . I 7 HOH A 20 516 21 HOH HOH . I 7 HOH A 21 517 22 HOH HOH . I 7 HOH A 22 518 23 HOH HOH . I 7 HOH A 23 519 24 HOH HOH . I 7 HOH A 24 520 25 HOH HOH . I 7 HOH A 25 521 26 HOH HOH . I 7 HOH A 26 522 27 HOH HOH . I 7 HOH A 27 523 28 HOH HOH . I 7 HOH A 28 524 29 HOH HOH . I 7 HOH A 29 525 30 HOH HOH . I 7 HOH A 30 526 31 HOH HOH . I 7 HOH A 31 527 32 HOH HOH . I 7 HOH A 32 528 33 HOH HOH . I 7 HOH A 33 529 34 HOH HOH . I 7 HOH A 34 530 35 HOH HOH . I 7 HOH A 35 531 36 HOH HOH . I 7 HOH A 36 532 37 HOH HOH . I 7 HOH A 37 533 38 HOH HOH . I 7 HOH A 38 534 39 HOH HOH . I 7 HOH A 39 535 40 HOH HOH . I 7 HOH A 40 536 41 HOH HOH . I 7 HOH A 41 537 42 HOH HOH . I 7 HOH A 42 538 43 HOH HOH . I 7 HOH A 43 539 44 HOH HOH . I 7 HOH A 44 540 45 HOH HOH . I 7 HOH A 45 541 46 HOH HOH . I 7 HOH A 46 542 47 HOH HOH . I 7 HOH A 47 543 48 HOH HOH . I 7 HOH A 48 544 49 HOH HOH . I 7 HOH A 49 545 50 HOH HOH . I 7 HOH A 50 546 51 HOH HOH . I 7 HOH A 51 547 52 HOH HOH . I 7 HOH A 52 548 53 HOH HOH . I 7 HOH A 53 549 54 HOH HOH . I 7 HOH A 54 550 55 HOH HOH . I 7 HOH A 55 551 56 HOH HOH . I 7 HOH A 56 552 57 HOH HOH . I 7 HOH A 57 553 58 HOH HOH . I 7 HOH A 58 554 59 HOH HOH . I 7 HOH A 59 555 60 HOH HOH . I 7 HOH A 60 556 61 HOH HOH . I 7 HOH A 61 557 62 HOH HOH . I 7 HOH A 62 558 63 HOH HOH . I 7 HOH A 63 559 64 HOH HOH . I 7 HOH A 64 560 65 HOH HOH . I 7 HOH A 65 561 66 HOH HOH . I 7 HOH A 66 562 67 HOH HOH . I 7 HOH A 67 563 68 HOH HOH . I 7 HOH A 68 564 69 HOH HOH . I 7 HOH A 69 565 70 HOH HOH . I 7 HOH A 70 566 71 HOH HOH . I 7 HOH A 71 567 72 HOH HOH . I 7 HOH A 72 568 73 HOH HOH . I 7 HOH A 73 569 74 HOH HOH . I 7 HOH A 74 570 75 HOH HOH . I 7 HOH A 75 571 76 HOH HOH . I 7 HOH A 76 572 77 HOH HOH . I 7 HOH A 77 573 78 HOH HOH . I 7 HOH A 78 574 79 HOH HOH . I 7 HOH A 79 575 80 HOH HOH . I 7 HOH A 80 576 81 HOH HOH . I 7 HOH A 81 577 82 HOH HOH . I 7 HOH A 82 578 83 HOH HOH . I 7 HOH A 83 579 84 HOH HOH . I 7 HOH A 84 580 85 HOH HOH . I 7 HOH A 85 581 86 HOH HOH . I 7 HOH A 86 582 87 HOH HOH . I 7 HOH A 87 583 88 HOH HOH . I 7 HOH A 88 584 89 HOH HOH . I 7 HOH A 89 585 90 HOH HOH . I 7 HOH A 90 586 91 HOH HOH . I 7 HOH A 91 587 92 HOH HOH . I 7 HOH A 92 588 93 HOH HOH . I 7 HOH A 93 589 94 HOH HOH . I 7 HOH A 94 590 95 HOH HOH . I 7 HOH A 95 591 96 HOH HOH . I 7 HOH A 96 592 97 HOH HOH . I 7 HOH A 97 593 98 HOH HOH . I 7 HOH A 98 594 99 HOH HOH . I 7 HOH A 99 595 100 HOH HOH . I 7 HOH A 100 596 101 HOH HOH . I 7 HOH A 101 597 102 HOH HOH . I 7 HOH A 102 598 103 HOH HOH . I 7 HOH A 103 599 104 HOH HOH . I 7 HOH A 104 600 105 HOH HOH . I 7 HOH A 105 601 106 HOH HOH . I 7 HOH A 106 602 107 HOH HOH . I 7 HOH A 107 603 108 HOH HOH . I 7 HOH A 108 604 109 HOH HOH . I 7 HOH A 109 605 110 HOH HOH . I 7 HOH A 110 606 111 HOH HOH . I 7 HOH A 111 607 112 HOH HOH . I 7 HOH A 112 608 113 HOH HOH . I 7 HOH A 113 609 114 HOH HOH . I 7 HOH A 114 610 115 HOH HOH . I 7 HOH A 115 611 116 HOH HOH . I 7 HOH A 116 612 117 HOH HOH . I 7 HOH A 117 613 118 HOH HOH . I 7 HOH A 118 614 119 HOH HOH . I 7 HOH A 119 615 120 HOH HOH . I 7 HOH A 120 616 121 HOH HOH . I 7 HOH A 121 617 122 HOH HOH . I 7 HOH A 122 618 123 HOH HOH . I 7 HOH A 123 619 124 HOH HOH . I 7 HOH A 124 620 125 HOH HOH . I 7 HOH A 125 621 126 HOH HOH . I 7 HOH A 126 622 127 HOH HOH . I 7 HOH A 127 623 128 HOH HOH . I 7 HOH A 128 624 129 HOH HOH . I 7 HOH A 129 625 130 HOH HOH . I 7 HOH A 130 626 131 HOH HOH . I 7 HOH A 131 627 132 HOH HOH . I 7 HOH A 132 628 133 HOH HOH . I 7 HOH A 133 629 134 HOH HOH . I 7 HOH A 134 630 135 HOH HOH . I 7 HOH A 135 631 136 HOH HOH . I 7 HOH A 136 632 137 HOH HOH . I 7 HOH A 137 633 138 HOH HOH . I 7 HOH A 138 634 139 HOH HOH . I 7 HOH A 139 635 140 HOH HOH . I 7 HOH A 140 636 141 HOH HOH . I 7 HOH A 141 637 142 HOH HOH . I 7 HOH A 142 638 143 HOH HOH . I 7 HOH A 143 639 144 HOH HOH . I 7 HOH A 144 640 145 HOH HOH . I 7 HOH A 145 641 146 HOH HOH . I 7 HOH A 146 642 147 HOH HOH . I 7 HOH A 147 643 148 HOH HOH . I 7 HOH A 148 644 149 HOH HOH . I 7 HOH A 149 645 150 HOH HOH . I 7 HOH A 150 646 151 HOH HOH . I 7 HOH A 151 647 152 HOH HOH . I 7 HOH A 152 648 153 HOH HOH . I 7 HOH A 153 649 154 HOH HOH . I 7 HOH A 154 650 155 HOH HOH . I 7 HOH A 155 651 156 HOH HOH . I 7 HOH A 156 652 157 HOH HOH . I 7 HOH A 157 653 158 HOH HOH . I 7 HOH A 158 654 159 HOH HOH . I 7 HOH A 159 655 160 HOH HOH . J 7 HOH B 1 7 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 6 17.005 -5.495 -44.991 1 45.51 ? C1 GOL 496 A 1 HETATM 2 O O1 GOL . . . H 6 17.425 -4.179 -44.85 1 40.73 ? O1 GOL 496 A 1 HETATM 3 C C2 GOL . . . H 6 16.064 -5.741 -43.86 1 45.86 ? C2 GOL 496 A 1 HETATM 4 O O2 GOL . . . H 6 15.829 -7.141 -43.713 1 44.42 ? O2 GOL 496 A 1 HETATM 5 C C3 GOL . . . H 6 14.79 -4.916 -44.013 1 45.27 ? C3 GOL 496 A 1 HETATM 6 O O3 GOL . . . H 6 14.745 -4.129 -45.153 1 47.31 ? O3 GOL 496 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #