data_3RS9 # _model_server_result.job_id gSyMbEXyaczRQ_vkWrXgsg _model_server_result.datetime_utc '2024-11-22 09:41:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rs9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":495}' # _entry.id 3RS9 # _exptl.entry_id 3RS9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3RS9 _cell.length_a 122.073 _cell.length_b 122.073 _cell.length_c 155.292 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RS9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 5 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 6 'crystal symmetry operation' 6_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 7 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 8 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 64 A ASN 52 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.881 ? metalc ? metalc2 A O ASP 126 A ASP 114 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.946 ? metalc ? metalc3 A OD2 ASP 126 A ASP 114 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.394 ? metalc ? metalc4 A OD1 ASP 126 A ASP 114 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.497 ? metalc ? metalc5 A O PHE 129 A PHE 117 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.914 ? metalc ? metalc6 A O VAL 158 A VAL 146 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.922 ? metalc ? metalc7 A O VAL 160 A VAL 148 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.838 ? metalc ? metalc8 A OG SER 162 A SER 150 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.955 ? metalc ? metalc9 D MG MG . A MG 492 1_555 F O2G BA3 . A BA3 494 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc10 D MG MG . A MG 492 1_555 H O HOH . A HOH 573 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc11 D MG MG . A MG 492 1_555 H O HOH . A HOH 574 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc12 D MG MG . A MG 492 1_555 H O HOH . A HOH 579 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 210 n n C1 C2 GOL sing 211 n n C1 H11 GOL sing 212 n n C1 H12 GOL sing 213 n n O1 HO1 GOL sing 214 n n C2 O2 GOL sing 215 n n C2 C3 GOL sing 216 n n C2 H2 GOL sing 217 n n O2 HO2 GOL sing 218 n n C3 O3 GOL sing 219 n n C3 H31 GOL sing 220 n n C3 H32 GOL sing 221 n n O3 HO3 GOL sing 222 n n # _atom_sites.entry_id 3RS9 _atom_sites.fract_transf_matrix[1][1] 0.008192 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008192 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006439 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 K A 1 491 491 K K . D 4 MG A 1 492 492 MG MG . E 5 BA3 A 1 493 493 BA3 BA3 . F 5 BA3 A 1 494 494 BA3 BA3 . G 6 GOL A 1 495 495 GOL GOL . H 7 HOH A 1 496 496 HOH HOH . H 7 HOH A 2 497 497 HOH HOH . H 7 HOH A 3 498 498 HOH HOH . H 7 HOH A 4 499 499 HOH HOH . H 7 HOH A 5 500 500 HOH HOH . H 7 HOH A 6 501 501 HOH HOH . H 7 HOH A 7 502 502 HOH HOH . H 7 HOH A 8 503 503 HOH HOH . H 7 HOH A 9 504 504 HOH HOH . H 7 HOH A 10 505 505 HOH HOH . H 7 HOH A 11 506 506 HOH HOH . H 7 HOH A 12 507 507 HOH HOH . H 7 HOH A 13 508 508 HOH HOH . H 7 HOH A 14 509 509 HOH HOH . H 7 HOH A 15 510 510 HOH HOH . H 7 HOH A 16 511 511 HOH HOH . H 7 HOH A 17 512 512 HOH HOH . H 7 HOH A 18 513 513 HOH HOH . H 7 HOH A 19 514 514 HOH HOH . H 7 HOH A 20 515 515 HOH HOH . H 7 HOH A 21 516 516 HOH HOH . H 7 HOH A 22 517 517 HOH HOH . H 7 HOH A 23 518 518 HOH HOH . H 7 HOH A 24 519 519 HOH HOH . H 7 HOH A 25 520 520 HOH HOH . H 7 HOH A 26 521 521 HOH HOH . H 7 HOH A 27 522 522 HOH HOH . H 7 HOH A 28 523 523 HOH HOH . H 7 HOH A 29 524 524 HOH HOH . H 7 HOH A 30 525 525 HOH HOH . H 7 HOH A 31 526 526 HOH HOH . H 7 HOH A 32 527 527 HOH HOH . H 7 HOH A 33 528 528 HOH HOH . H 7 HOH A 34 529 529 HOH HOH . H 7 HOH A 35 530 530 HOH HOH . H 7 HOH A 36 531 531 HOH HOH . H 7 HOH A 37 532 532 HOH HOH . H 7 HOH A 38 533 533 HOH HOH . H 7 HOH A 39 534 534 HOH HOH . H 7 HOH A 40 535 535 HOH HOH . H 7 HOH A 41 536 536 HOH HOH . H 7 HOH A 42 537 537 HOH HOH . H 7 HOH A 43 538 538 HOH HOH . H 7 HOH A 44 539 539 HOH HOH . H 7 HOH A 45 540 540 HOH HOH . H 7 HOH A 46 541 541 HOH HOH . H 7 HOH A 47 542 542 HOH HOH . H 7 HOH A 48 543 543 HOH HOH . H 7 HOH A 49 544 544 HOH HOH . H 7 HOH A 50 545 545 HOH HOH . H 7 HOH A 51 546 546 HOH HOH . H 7 HOH A 52 547 547 HOH HOH . H 7 HOH A 53 548 548 HOH HOH . H 7 HOH A 54 549 549 HOH HOH . H 7 HOH A 55 550 550 HOH HOH . H 7 HOH A 56 551 551 HOH HOH . H 7 HOH A 57 552 552 HOH HOH . H 7 HOH A 58 553 553 HOH HOH . H 7 HOH A 59 554 554 HOH HOH . H 7 HOH A 60 555 555 HOH HOH . H 7 HOH A 61 556 556 HOH HOH . H 7 HOH A 62 557 557 HOH HOH . H 7 HOH A 63 558 558 HOH HOH . H 7 HOH A 64 559 559 HOH HOH . H 7 HOH A 65 560 560 HOH HOH . H 7 HOH A 66 561 561 HOH HOH . H 7 HOH A 67 562 562 HOH HOH . H 7 HOH A 68 563 563 HOH HOH . H 7 HOH A 69 564 564 HOH HOH . H 7 HOH A 70 565 565 HOH HOH . H 7 HOH A 71 566 566 HOH HOH . H 7 HOH A 72 567 567 HOH HOH . H 7 HOH A 73 568 568 HOH HOH . H 7 HOH A 74 569 569 HOH HOH . H 7 HOH A 75 570 570 HOH HOH . H 7 HOH A 76 571 571 HOH HOH . H 7 HOH A 77 572 572 HOH HOH . H 7 HOH A 78 573 573 HOH HOH . H 7 HOH A 79 574 574 HOH HOH . H 7 HOH A 80 575 575 HOH HOH . H 7 HOH A 81 576 576 HOH HOH . H 7 HOH A 82 577 577 HOH HOH . H 7 HOH A 83 578 578 HOH HOH . H 7 HOH A 84 579 579 HOH HOH . H 7 HOH A 85 580 580 HOH HOH . H 7 HOH A 86 581 581 HOH HOH . H 7 HOH A 87 582 582 HOH HOH . H 7 HOH A 88 583 583 HOH HOH . H 7 HOH A 89 584 584 HOH HOH . H 7 HOH A 90 585 585 HOH HOH . H 7 HOH A 91 586 586 HOH HOH . H 7 HOH A 92 587 587 HOH HOH . H 7 HOH A 93 588 588 HOH HOH . H 7 HOH A 94 589 589 HOH HOH . H 7 HOH A 95 590 590 HOH HOH . H 7 HOH A 96 591 591 HOH HOH . H 7 HOH A 97 592 592 HOH HOH . H 7 HOH A 98 593 593 HOH HOH . H 7 HOH A 99 594 594 HOH HOH . H 7 HOH A 100 595 595 HOH HOH . H 7 HOH A 101 596 596 HOH HOH . H 7 HOH A 102 597 597 HOH HOH . H 7 HOH A 103 598 598 HOH HOH . H 7 HOH A 104 599 599 HOH HOH . H 7 HOH A 105 600 600 HOH HOH . H 7 HOH A 106 601 601 HOH HOH . H 7 HOH A 107 602 602 HOH HOH . H 7 HOH A 108 603 603 HOH HOH . H 7 HOH A 109 604 604 HOH HOH . H 7 HOH A 110 605 605 HOH HOH . H 7 HOH A 111 606 606 HOH HOH . H 7 HOH A 112 607 607 HOH HOH . H 7 HOH A 113 608 608 HOH HOH . H 7 HOH A 114 609 609 HOH HOH . H 7 HOH A 115 610 610 HOH HOH . H 7 HOH A 116 611 611 HOH HOH . H 7 HOH A 117 612 612 HOH HOH . H 7 HOH A 118 613 613 HOH HOH . H 7 HOH A 119 614 614 HOH HOH . H 7 HOH A 120 615 615 HOH HOH . H 7 HOH A 121 616 616 HOH HOH . H 7 HOH A 122 617 617 HOH HOH . H 7 HOH A 123 618 618 HOH HOH . H 7 HOH A 124 619 619 HOH HOH . H 7 HOH A 125 620 620 HOH HOH . H 7 HOH A 126 621 621 HOH HOH . H 7 HOH A 127 622 622 HOH HOH . H 7 HOH A 128 623 623 HOH HOH . H 7 HOH A 129 624 624 HOH HOH . H 7 HOH A 130 625 625 HOH HOH . H 7 HOH A 131 626 626 HOH HOH . I 7 HOH B 1 1 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 6 -4.064 49.79 9.961 1 65.43 ? C1 GOL 495 A 1 HETATM 2 O O1 GOL . . . G 6 -5.093 50.261 9.131 1 64.11 ? O1 GOL 495 A 1 HETATM 3 C C2 GOL . . . G 6 -4.63 48.731 10.906 1 67.22 ? C2 GOL 495 A 1 HETATM 4 O O2 GOL . . . G 6 -6.024 48.842 11.155 1 65.92 ? O2 GOL 495 A 1 HETATM 5 C C3 GOL . . . G 6 -3.947 48.837 12.255 1 69.09 ? C3 GOL 495 A 1 HETATM 6 O O3 GOL . . . G 6 -2.589 49.111 12.049 1 71.19 ? O3 GOL 495 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #