data_3RSF # _model_server_result.job_id Jaem-tyTrG9tlH6abOw6Bg _model_server_result.datetime_utc '2024-11-14 23:59:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rsf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":492}' # _entry.id 3RSF # _exptl.entry_id 3RSF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 836.387 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "BIS(ADENOSINE)-5'-TETRAPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3RSF _cell.length_a 122.378 _cell.length_b 122.378 _cell.length_c 155.434 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RSF _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 5 'crystal symmetry operation' 5_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 0 0 155.434 6 'crystal symmetry operation' 6_556 x,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 155.434 7 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 155.434 8 'crystal symmetry operation' 8_556 -y,-x,-z+1 0 -1 0 -1 0 0 0 0 -1 0 0 155.434 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 64 A ASN 52 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.965 ? metalc ? metalc2 A O ASP 126 A ASP 114 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.039 ? metalc ? metalc3 A OD2 ASP 126 A ASP 114 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.353 ? metalc ? metalc4 A O PHE 129 A PHE 117 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.939 ? metalc ? metalc5 A O VAL 158 A VAL 146 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.99 ? metalc ? metalc6 A O VAL 160 A VAL 148 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.862 ? metalc ? metalc7 A OG SER 162 A SER 150 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.055 ? # _chem_comp.formula 'C20 H28 N10 O19 P4' _chem_comp.formula_weight 836.387 _chem_comp.id B4P _chem_comp.mon_nstd_flag . _chem_comp.name "BIS(ADENOSINE)-5'-TETRAPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A B4P doub 70 n n PA O2A B4P sing 71 n n PA O3A B4P sing 72 n n PA O5E B4P sing 73 n n O2A HOA2 B4P sing 74 n n O3A PB B4P sing 75 n n PB O1B B4P doub 76 n n PB O2B B4P sing 77 n n PB O3B B4P sing 78 n n O2B HOB2 B4P sing 79 n n O3B PG B4P sing 80 n n PG O1G B4P doub 81 n n PG O2G B4P sing 82 n n PG O3G B4P sing 83 n n O2G HOG2 B4P sing 84 n n O3G PD B4P sing 85 n n PD O1D B4P doub 86 n n PD O2D B4P sing 87 n n PD O5F B4P sing 88 n n O2D HOD2 B4P sing 89 n n O5E C5E B4P sing 90 n n C5E C4E B4P sing 91 n n C5E H51A B4P sing 92 n n C5E H52A B4P sing 93 n n C4E O4E B4P sing 94 n n C4E C3E B4P sing 95 n n C4E H4E B4P sing 96 n n O4E C1E B4P sing 97 n n C3E O3E B4P sing 98 n n C3E C2E B4P sing 99 n n C3E H3E B4P sing 100 n n O3E HO3A B4P sing 101 n n C2E O2E B4P sing 102 n n C2E C1E B4P sing 103 n n C2E H2E B4P sing 104 n n O2E HO2A B4P sing 105 n n C1E N9A B4P sing 106 n n C1E H1E B4P sing 107 n n N9A C8A B4P sing 108 n y N9A C4A B4P sing 109 n y C8A N7A B4P doub 110 n y C8A H8A B4P sing 111 n n N7A C5A B4P sing 112 n y C5A C6A B4P sing 113 n y C5A C4A B4P doub 114 n y C6A N6A B4P sing 115 n n C6A N1A B4P doub 116 n y N6A H61A B4P sing 117 n n N6A H62A B4P sing 118 n n N1A C2A B4P sing 119 n y C2A N3A B4P doub 120 n y C2A H2A B4P sing 121 n n N3A C4A B4P sing 122 n y O5F C5F B4P sing 123 n n C5F C4F B4P sing 124 n n C5F H51B B4P sing 125 n n C5F H52B B4P sing 126 n n C4F O4F B4P sing 127 n n C4F C3F B4P sing 128 n n C4F H4F B4P sing 129 n n O4F C1F B4P sing 130 n n C3F O3F B4P sing 131 n n C3F C2F B4P sing 132 n n C3F H3F B4P sing 133 n n O3F HO3B B4P sing 134 n n C2F O2F B4P sing 135 n n C2F C1F B4P sing 136 n n C2F H2F B4P sing 137 n n O2F HO2B B4P sing 138 n n C1F N9B B4P sing 139 n n C1F H1F B4P sing 140 n n N9B C8B B4P sing 141 n y N9B C4B B4P sing 142 n y C8B N7B B4P doub 143 n y C8B H8B B4P sing 144 n n N7B C5B B4P sing 145 n y C5B C6B B4P sing 146 n y C5B C4B B4P doub 147 n y C6B N6B B4P sing 148 n n C6B N1B B4P doub 149 n y N6B H61B B4P sing 150 n n N6B H62B B4P sing 151 n n N1B C2B B4P sing 152 n y C2B N3B B4P doub 153 n y C2B H2B B4P sing 154 n n N3B C4B B4P sing 155 n y # _atom_sites.entry_id 3RSF _atom_sites.fract_transf_matrix[1][1] 0.008171 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008171 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006434 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 K A 1 491 491 K K . D 4 B4P A 1 492 492 B4P B4P . E 5 HOH A 1 493 493 HOH HOH . E 5 HOH A 2 494 494 HOH HOH . E 5 HOH A 3 495 495 HOH HOH . E 5 HOH A 4 496 496 HOH HOH . E 5 HOH A 5 497 497 HOH HOH . E 5 HOH A 6 498 498 HOH HOH . E 5 HOH A 7 499 499 HOH HOH . E 5 HOH A 8 500 500 HOH HOH . E 5 HOH A 9 501 501 HOH HOH . E 5 HOH A 10 502 502 HOH HOH . E 5 HOH A 11 503 503 HOH HOH . E 5 HOH A 12 504 504 HOH HOH . E 5 HOH A 13 505 505 HOH HOH . E 5 HOH A 14 506 506 HOH HOH . E 5 HOH A 15 507 507 HOH HOH . E 5 HOH A 16 508 508 HOH HOH . E 5 HOH A 17 509 509 HOH HOH . E 5 HOH A 18 510 510 HOH HOH . E 5 HOH A 19 511 511 HOH HOH . E 5 HOH A 20 512 512 HOH HOH . E 5 HOH A 21 513 513 HOH HOH . E 5 HOH A 22 514 514 HOH HOH . E 5 HOH A 23 515 515 HOH HOH . E 5 HOH A 24 516 516 HOH HOH . E 5 HOH A 25 517 517 HOH HOH . E 5 HOH A 26 518 518 HOH HOH . E 5 HOH A 27 519 519 HOH HOH . E 5 HOH A 28 520 520 HOH HOH . E 5 HOH A 29 521 521 HOH HOH . E 5 HOH A 30 522 522 HOH HOH . E 5 HOH A 31 523 523 HOH HOH . E 5 HOH A 32 524 524 HOH HOH . E 5 HOH A 33 525 525 HOH HOH . E 5 HOH A 34 526 526 HOH HOH . E 5 HOH A 35 527 527 HOH HOH . E 5 HOH A 36 528 528 HOH HOH . E 5 HOH A 37 529 529 HOH HOH . E 5 HOH A 38 530 530 HOH HOH . E 5 HOH A 39 531 531 HOH HOH . E 5 HOH A 40 532 532 HOH HOH . E 5 HOH A 41 533 533 HOH HOH . E 5 HOH A 42 534 534 HOH HOH . E 5 HOH A 43 535 535 HOH HOH . E 5 HOH A 44 536 536 HOH HOH . E 5 HOH A 45 537 537 HOH HOH . E 5 HOH A 46 538 538 HOH HOH . E 5 HOH A 47 539 539 HOH HOH . E 5 HOH A 48 540 540 HOH HOH . E 5 HOH A 49 541 541 HOH HOH . E 5 HOH A 50 542 542 HOH HOH . E 5 HOH A 51 543 543 HOH HOH . E 5 HOH A 52 544 544 HOH HOH . E 5 HOH A 53 545 545 HOH HOH . E 5 HOH A 54 546 546 HOH HOH . E 5 HOH A 55 547 547 HOH HOH . E 5 HOH A 56 548 548 HOH HOH . E 5 HOH A 57 549 549 HOH HOH . E 5 HOH A 58 550 550 HOH HOH . E 5 HOH A 59 551 551 HOH HOH . E 5 HOH A 60 552 552 HOH HOH . E 5 HOH A 61 553 553 HOH HOH . E 5 HOH A 62 554 554 HOH HOH . E 5 HOH A 63 555 555 HOH HOH . E 5 HOH A 64 556 556 HOH HOH . E 5 HOH A 65 557 557 HOH HOH . E 5 HOH A 66 558 558 HOH HOH . E 5 HOH A 67 559 559 HOH HOH . E 5 HOH A 68 560 560 HOH HOH . E 5 HOH A 69 561 561 HOH HOH . E 5 HOH A 70 562 562 HOH HOH . E 5 HOH A 71 563 563 HOH HOH . E 5 HOH A 72 564 564 HOH HOH . E 5 HOH A 73 565 565 HOH HOH . E 5 HOH A 74 566 566 HOH HOH . E 5 HOH A 75 567 567 HOH HOH . E 5 HOH A 76 568 568 HOH HOH . E 5 HOH A 77 569 569 HOH HOH . E 5 HOH A 78 570 570 HOH HOH . E 5 HOH A 79 571 571 HOH HOH . E 5 HOH A 80 572 572 HOH HOH . E 5 HOH A 81 573 573 HOH HOH . E 5 HOH A 82 574 574 HOH HOH . E 5 HOH A 83 575 575 HOH HOH . E 5 HOH A 84 576 576 HOH HOH . F 5 HOH B 1 8 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA B4P . . . D 4 51.764 -11.979 62.261 1 42.09 ? PA B4P 492 A 1 HETATM 2 O O1A B4P . . . D 4 51.552 -12.085 63.768 1 41.2 ? O1A B4P 492 A 1 HETATM 3 O O2A B4P . . . D 4 50.551 -11.876 61.39 1 45.1 ? O2A B4P 492 A 1 HETATM 4 O O3A B4P . . . D 4 52.589 -10.759 61.695 1 46.35 ? O3A B4P 492 A 1 HETATM 5 P PB B4P . . . D 4 53.625 -9.777 62.36 1 46.83 ? PB B4P 492 A 1 HETATM 6 O O1B B4P . . . D 4 54.238 -10.471 63.526 1 46.62 ? O1B B4P 492 A 1 HETATM 7 O O2B B4P . . . D 4 52.946 -8.487 62.591 1 47.95 ? O2B B4P 492 A 1 HETATM 8 O O3B B4P . . . D 4 54.799 -9.59 61.307 1 58.45 ? O3B B4P 492 A 1 HETATM 9 P PG B4P . . . D 4 54.624 -8.893 59.881 1 67.97 ? PG B4P 492 A 1 HETATM 10 O O1G B4P . . . D 4 53.257 -8.211 59.765 1 67.21 ? O1G B4P 492 A 1 HETATM 11 O O2G B4P . . . D 4 54.972 -9.989 58.877 1 68.81 ? O2G B4P 492 A 1 HETATM 12 O O3G B4P . . . D 4 55.771 -7.78 59.625 1 75.06 ? O3G B4P 492 A 1 HETATM 13 P PD B4P . . . D 4 56.569 -7.003 60.79 1 81.21 ? PD B4P 492 A 1 HETATM 14 O O1D B4P . . . D 4 57.54 -6.045 60.126 1 82.73 ? O1D B4P 492 A 1 HETATM 15 O O2D B4P . . . D 4 57.358 -7.974 61.662 1 80.19 ? O2D B4P 492 A 1 HETATM 16 O O5E B4P . . . D 4 52.471 -13.373 61.831 1 47.85 ? O5E B4P 492 A 1 HETATM 17 C C5E B4P . . . D 4 53.859 -13.37 61.628 1 51.21 ? C5E B4P 492 A 1 HETATM 18 C C4E B4P . . . D 4 54.461 -14.754 61.349 1 52.95 ? C4E B4P 492 A 1 HETATM 19 O O4E B4P . . . D 4 53.575 -15.86 61.187 1 50.36 ? O4E B4P 492 A 1 HETATM 20 C C3E B4P . . . D 4 55.232 -14.72 60.014 1 54.49 ? C3E B4P 492 A 1 HETATM 21 O O3E B4P . . . D 4 56.417 -13.966 59.988 1 57.36 ? O3E B4P 492 A 1 HETATM 22 C C2E B4P . . . D 4 55.513 -16.182 59.782 1 52.97 ? C2E B4P 492 A 1 HETATM 23 O O2E B4P . . . D 4 56.674 -16.559 60.451 1 52.98 ? O2E B4P 492 A 1 HETATM 24 C C1E B4P . . . D 4 54.24 -16.82 60.337 1 51.25 ? C1E B4P 492 A 1 HETATM 25 N N9A B4P . . . D 4 53.532 -17.149 59.081 1 51.25 ? N9A B4P 492 A 1 HETATM 26 C C8A B4P . . . D 4 53.097 -16.217 58.126 1 49.95 ? C8A B4P 492 A 1 HETATM 27 N N7A B4P . . . D 4 52.51 -16.915 57.131 1 49.73 ? N7A B4P 492 A 1 HETATM 28 C C5A B4P . . . D 4 52.569 -18.246 57.414 1 48.86 ? C5A B4P 492 A 1 HETATM 29 C C6A B4P . . . D 4 52.13 -19.339 56.712 1 48.89 ? C6A B4P 492 A 1 HETATM 30 N N6A B4P . . . D 4 51.318 -19.141 55.666 1 51.9 ? N6A B4P 492 A 1 HETATM 31 N N1A B4P . . . D 4 52.307 -20.591 57.235 1 48.87 ? N1A B4P 492 A 1 HETATM 32 C C2A B4P . . . D 4 52.935 -20.745 58.45 1 48.89 ? C2A B4P 492 A 1 HETATM 33 N N3A B4P . . . D 4 53.383 -19.638 59.133 1 46.22 ? N3A B4P 492 A 1 HETATM 34 C C4A B4P . . . D 4 53.215 -18.415 58.621 1 48.04 ? C4A B4P 492 A 1 HETATM 35 O O5F B4P . . . D 4 55.365 -6.213 61.569 1 81.56 ? O5F B4P 492 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 35 #