data_3RSG # _model_server_result.job_id 4-8PGH6H72O2RbZvRBwKdw _model_server_result.datetime_utc '2024-11-15 00:01:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rsg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":495}' # _entry.id 3RSG # _exptl.entry_id 3RSG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3RSG _cell.length_a 122.168 _cell.length_b 122.168 _cell.length_c 155.108 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RSG _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 5 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 6 'crystal symmetry operation' 6_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 7 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 8 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 64 A ASN 52 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.916 ? metalc ? metalc2 A O ASP 126 A ASP 114 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.955 ? metalc ? metalc3 A OD2 ASP 126 A ASP 114 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.392 ? metalc ? metalc4 A O PHE 129 A PHE 117 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.818 ? metalc ? metalc5 A O VAL 158 A VAL 146 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.942 ? metalc ? metalc6 A O VAL 160 A VAL 148 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.829 ? metalc ? metalc7 A OG SER 162 A SER 150 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.91 ? metalc ? metalc8 D MG MG . A MG 492 1_555 F O2A APR . A APR 494 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc9 D MG MG . A MG 492 1_555 F O1D APR . A APR 494 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc10 D MG MG . A MG 492 1_555 F O5D APR . A APR 494 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? metalc ? metalc11 D MG MG . A MG 492 1_555 F O4D APR . A APR 494 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.869 ? metalc ? metalc12 D MG MG . A MG 492 1_555 H O HOH . A HOH 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc13 D MG MG . A MG 492 1_555 H O HOH . A HOH 547 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 299 n n PA O2A NAD sing 300 n n PA O5B NAD sing 301 n n PA O3 NAD sing 302 n n O2A HOA2 NAD sing 303 n n O5B C5B NAD sing 304 n n C5B C4B NAD sing 305 n n C5B H51A NAD sing 306 n n C5B H52A NAD sing 307 n n C4B O4B NAD sing 308 n n C4B C3B NAD sing 309 n n C4B H4B NAD sing 310 n n O4B C1B NAD sing 311 n n C3B O3B NAD sing 312 n n C3B C2B NAD sing 313 n n C3B H3B NAD sing 314 n n O3B HO3A NAD sing 315 n n C2B O2B NAD sing 316 n n C2B C1B NAD sing 317 n n C2B H2B NAD sing 318 n n O2B HO2A NAD sing 319 n n C1B N9A NAD sing 320 n n C1B H1B NAD sing 321 n n N9A C8A NAD sing 322 n y N9A C4A NAD sing 323 n y C8A N7A NAD doub 324 n y C8A H8A NAD sing 325 n n N7A C5A NAD sing 326 n y C5A C6A NAD sing 327 n y C5A C4A NAD doub 328 n y C6A N6A NAD sing 329 n n C6A N1A NAD doub 330 n y N6A H61A NAD sing 331 n n N6A H62A NAD sing 332 n n N1A C2A NAD sing 333 n y C2A N3A NAD doub 334 n y C2A H2A NAD sing 335 n n N3A C4A NAD sing 336 n y O3 PN NAD sing 337 n n PN O1N NAD doub 338 n n PN O2N NAD sing 339 n n PN O5D NAD sing 340 n n O5D C5D NAD sing 341 n n C5D C4D NAD sing 342 n n C5D H51N NAD sing 343 n n C5D H52N NAD sing 344 n n C4D O4D NAD sing 345 n n C4D C3D NAD sing 346 n n C4D H4D NAD sing 347 n n O4D C1D NAD sing 348 n n C3D O3D NAD sing 349 n n C3D C2D NAD sing 350 n n C3D H3D NAD sing 351 n n O3D HO3N NAD sing 352 n n C2D O2D NAD sing 353 n n C2D C1D NAD sing 354 n n C2D H2D NAD sing 355 n n O2D HO2N NAD sing 356 n n C1D N1N NAD sing 357 n n C1D H1D NAD sing 358 n n N1N C2N NAD sing 359 n y N1N C6N NAD doub 360 n y C2N C3N NAD doub 361 n y C2N H2N NAD sing 362 n n C3N C7N NAD sing 363 n n C3N C4N NAD sing 364 n y C7N O7N NAD doub 365 n n C7N N7N NAD sing 366 n n N7N H71N NAD sing 367 n n N7N H72N NAD sing 368 n n C4N C5N NAD doub 369 n y C4N H4N NAD sing 370 n n C5N C6N NAD sing 371 n y C5N H5N NAD sing 372 n n C6N H6N NAD sing 373 n n # _atom_sites.entry_id 3RSG _atom_sites.fract_transf_matrix[1][1] 0.008185 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008185 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006447 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 K A 1 491 1 K K . D 4 MG A 1 492 2 MG MG . E 5 NAD A 1 493 3 NAD NAD . F 6 APR A 1 494 4 APR APR . G 5 NAD A 1 495 5 NAD NAD . H 7 HOH A 1 496 1 HOH HOH . H 7 HOH A 2 497 2 HOH HOH . H 7 HOH A 3 498 3 HOH HOH . H 7 HOH A 4 499 4 HOH HOH . H 7 HOH A 5 500 5 HOH HOH . H 7 HOH A 6 501 6 HOH HOH . H 7 HOH A 7 502 7 HOH HOH . H 7 HOH A 8 503 8 HOH HOH . H 7 HOH A 9 504 9 HOH HOH . H 7 HOH A 10 505 10 HOH HOH . H 7 HOH A 11 506 11 HOH HOH . H 7 HOH A 12 507 12 HOH HOH . H 7 HOH A 13 508 13 HOH HOH . H 7 HOH A 14 509 14 HOH HOH . H 7 HOH A 15 510 15 HOH HOH . H 7 HOH A 16 511 16 HOH HOH . H 7 HOH A 17 512 17 HOH HOH . H 7 HOH A 18 513 18 HOH HOH . H 7 HOH A 19 514 19 HOH HOH . H 7 HOH A 20 515 20 HOH HOH . H 7 HOH A 21 516 21 HOH HOH . H 7 HOH A 22 517 22 HOH HOH . H 7 HOH A 23 518 23 HOH HOH . H 7 HOH A 24 519 24 HOH HOH . H 7 HOH A 25 520 25 HOH HOH . H 7 HOH A 26 521 26 HOH HOH . H 7 HOH A 27 522 27 HOH HOH . H 7 HOH A 28 523 28 HOH HOH . H 7 HOH A 29 524 29 HOH HOH . H 7 HOH A 30 525 30 HOH HOH . H 7 HOH A 31 526 31 HOH HOH . H 7 HOH A 32 527 32 HOH HOH . H 7 HOH A 33 528 33 HOH HOH . H 7 HOH A 34 529 34 HOH HOH . H 7 HOH A 35 530 35 HOH HOH . H 7 HOH A 36 531 36 HOH HOH . H 7 HOH A 37 532 37 HOH HOH . H 7 HOH A 38 533 38 HOH HOH . H 7 HOH A 39 534 39 HOH HOH . H 7 HOH A 40 535 40 HOH HOH . H 7 HOH A 41 536 41 HOH HOH . H 7 HOH A 42 537 42 HOH HOH . H 7 HOH A 43 538 43 HOH HOH . H 7 HOH A 44 539 44 HOH HOH . H 7 HOH A 45 540 45 HOH HOH . H 7 HOH A 46 541 46 HOH HOH . H 7 HOH A 47 542 47 HOH HOH . H 7 HOH A 48 543 48 HOH HOH . H 7 HOH A 49 544 49 HOH HOH . H 7 HOH A 50 545 50 HOH HOH . H 7 HOH A 51 546 51 HOH HOH . H 7 HOH A 52 547 52 HOH HOH . H 7 HOH A 53 548 53 HOH HOH . H 7 HOH A 54 549 54 HOH HOH . H 7 HOH A 55 550 56 HOH HOH . H 7 HOH A 56 551 57 HOH HOH . H 7 HOH A 57 552 58 HOH HOH . H 7 HOH A 58 553 59 HOH HOH . H 7 HOH A 59 554 60 HOH HOH . H 7 HOH A 60 555 61 HOH HOH . H 7 HOH A 61 556 62 HOH HOH . H 7 HOH A 62 557 63 HOH HOH . H 7 HOH A 63 558 64 HOH HOH . H 7 HOH A 64 559 65 HOH HOH . H 7 HOH A 65 560 66 HOH HOH . H 7 HOH A 66 561 67 HOH HOH . H 7 HOH A 67 562 68 HOH HOH . H 7 HOH A 68 563 69 HOH HOH . H 7 HOH A 69 564 70 HOH HOH . H 7 HOH A 70 565 71 HOH HOH . H 7 HOH A 71 566 72 HOH HOH . H 7 HOH A 72 567 73 HOH HOH . H 7 HOH A 73 568 74 HOH HOH . H 7 HOH A 74 569 75 HOH HOH . H 7 HOH A 75 570 76 HOH HOH . H 7 HOH A 76 571 77 HOH HOH . H 7 HOH A 77 572 78 HOH HOH . H 7 HOH A 78 573 79 HOH HOH . H 7 HOH A 79 574 80 HOH HOH . H 7 HOH A 80 575 81 HOH HOH . H 7 HOH A 81 576 82 HOH HOH . H 7 HOH A 82 577 83 HOH HOH . H 7 HOH A 83 578 84 HOH HOH . H 7 HOH A 84 579 85 HOH HOH . H 7 HOH A 85 580 86 HOH HOH . H 7 HOH A 86 581 87 HOH HOH . H 7 HOH A 87 582 89 HOH HOH . H 7 HOH A 88 583 90 HOH HOH . H 7 HOH A 89 584 91 HOH HOH . H 7 HOH A 90 585 92 HOH HOH . H 7 HOH A 91 586 93 HOH HOH . H 7 HOH A 92 587 94 HOH HOH . H 7 HOH A 93 588 95 HOH HOH . H 7 HOH A 94 589 96 HOH HOH . H 7 HOH A 95 590 97 HOH HOH . H 7 HOH A 96 591 98 HOH HOH . H 7 HOH A 97 592 99 HOH HOH . H 7 HOH A 98 593 100 HOH HOH . H 7 HOH A 99 594 101 HOH HOH . H 7 HOH A 100 595 102 HOH HOH . H 7 HOH A 101 596 103 HOH HOH . H 7 HOH A 102 597 104 HOH HOH . H 7 HOH A 103 598 105 HOH HOH . H 7 HOH A 104 599 106 HOH HOH . H 7 HOH A 105 600 107 HOH HOH . H 7 HOH A 106 601 108 HOH HOH . H 7 HOH A 107 602 109 HOH HOH . H 7 HOH A 108 603 110 HOH HOH . H 7 HOH A 109 604 111 HOH HOH . H 7 HOH A 110 605 112 HOH HOH . H 7 HOH A 111 606 113 HOH HOH . H 7 HOH A 112 607 114 HOH HOH . H 7 HOH A 113 608 115 HOH HOH . H 7 HOH A 114 609 116 HOH HOH . H 7 HOH A 115 610 117 HOH HOH . H 7 HOH A 116 611 118 HOH HOH . H 7 HOH A 117 612 119 HOH HOH . H 7 HOH A 118 613 120 HOH HOH . H 7 HOH A 119 614 121 HOH HOH . I 7 HOH B 1 55 55 HOH HOH . I 7 HOH B 2 88 88 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . G 5 25.772 9.718 46.358 1 97.46 ? PA NAD 495 A 1 HETATM 2 O O1A NAD . . . G 5 26.308 8.853 47.419 1 96.41 ? O1A NAD 495 A 1 HETATM 3 O O2A NAD . . . G 5 25.151 8.855 45.328 1 97.91 ? O2A NAD 495 A 1 HETATM 4 O O5B NAD . . . G 5 26.973 10.647 45.824 1 93.75 ? O5B NAD 495 A 1 HETATM 5 C C5B NAD . . . G 5 26.697 11.639 44.865 1 90.9 ? C5B NAD 495 A 1 HETATM 6 C C4B NAD . . . G 5 27.979 12.155 44.229 1 89.17 ? C4B NAD 495 A 1 HETATM 7 O O4B NAD . . . G 5 28.667 11.134 43.531 1 87.24 ? O4B NAD 495 A 1 HETATM 8 C C3B NAD . . . G 5 27.74 13.198 43.154 1 88.2 ? C3B NAD 495 A 1 HETATM 9 O O3B NAD . . . G 5 27.513 14.478 43.659 1 88.71 ? O3B NAD 495 A 1 HETATM 10 C C2B NAD . . . G 5 29.016 13.128 42.346 1 86.91 ? C2B NAD 495 A 1 HETATM 11 O O2B NAD . . . G 5 30.084 13.828 42.94 1 85.97 ? O2B NAD 495 A 1 HETATM 12 C C1B NAD . . . G 5 29.325 11.653 42.397 1 84.6 ? C1B NAD 495 A 1 HETATM 13 N N9A NAD . . . G 5 28.901 10.982 41.167 1 80.59 ? N9A NAD 495 A 1 HETATM 14 C C8A NAD . . . G 5 27.903 10.077 40.969 1 78.76 ? C8A NAD 495 A 1 HETATM 15 N N7A NAD . . . G 5 27.924 9.717 39.665 1 77 ? N7A NAD 495 A 1 HETATM 16 C C5A NAD . . . G 5 28.926 10.371 39.025 1 77.93 ? C5A NAD 495 A 1 HETATM 17 C C6A NAD . . . G 5 29.42 10.393 37.696 1 77.45 ? C6A NAD 495 A 1 HETATM 18 N N6A NAD . . . G 5 29.089 9.48 36.767 1 74.15 ? N6A NAD 495 A 1 HETATM 19 N N1A NAD . . . G 5 30.487 11.227 37.411 1 77.93 ? N1A NAD 495 A 1 HETATM 20 C C2A NAD . . . G 5 31.069 12.013 38.39 1 78.55 ? C2A NAD 495 A 1 HETATM 21 N N3A NAD . . . G 5 30.575 11.978 39.68 1 78.83 ? N3A NAD 495 A 1 HETATM 22 C C4A NAD . . . G 5 29.533 11.171 39.985 1 78.78 ? C4A NAD 495 A 1 HETATM 23 O O3 NAD . . . G 5 24.708 10.815 46.921 1 101.8 ? O3 NAD 495 A 1 HETATM 24 P PN NAD . . . G 5 23.166 11.058 46.425 1 105.17 ? PN NAD 495 A 1 HETATM 25 O O1N NAD . . . G 5 22.691 9.937 45.576 1 105.84 ? O1N NAD 495 A 1 HETATM 26 O O2N NAD . . . G 5 23.048 12.448 45.923 1 104.91 ? O2N NAD 495 A 1 HETATM 27 O O5D NAD . . . G 5 22.292 10.961 47.788 1 105.46 ? O5D NAD 495 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 27 #