data_3RSL # _model_server_result.job_id JsT4oqIKVsfehDLx4_yVsQ _model_server_result.datetime_utc '2024-11-02 02:20:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rsl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":190}' # _entry.id 3RSL # _exptl.entry_id 3RSL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3RSL _cell.length_a 89.14 _cell.length_b 89.14 _cell.length_c 133.089 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RSL _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 17 A SER 17 1_555 P MG MG . A MG 592 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc2 A O PHE 28 A PHE 28 1_555 Q CA CA . A CA 591 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc3 A OD2 ASP 30 A ASP 30 1_555 Q CA CA . A CA 591 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc4 A OG1 THR 35 A THR 35 1_555 P MG MG . A MG 592 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc5 A O ARG 102 A ARG 102 1_555 S CA CA . A CA 593 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc6 A OD2 ASP 105 A ASP 105 1_555 S CA CA . A CA 593 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc7 A OD1 ASP 105 A ASP 105 1_555 S CA CA . A CA 593 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc8 A OE1 GLU 153 A GLU 153 1_555 R CA CA . A CA 596 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc9 A OD1 ASP 154 A ASP 154 1_555 R CA CA . A CA 596 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc10 B O2G GNP . A GNP 190 1_555 P MG MG . A MG 592 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc11 B O2B GNP . A GNP 190 1_555 P MG MG . A MG 592 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc12 T O HOH . A HOH 301 1_555 P MG MG . A MG 592 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc13 T O HOH . A HOH 303 1_555 P MG MG . A MG 592 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc14 T O HOH . A HOH 309 1_555 Q CA CA . A CA 591 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc15 T O HOH . A HOH 321 1_555 R CA CA . A CA 596 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.187 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 3RSL _atom_sites.fract_transf_matrix[1][1] 0.011218 _atom_sites.fract_transf_matrix[1][2] 0.006477 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012954 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007514 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GNP A 1 190 190 GNP GNP . C 3 RSF A 1 203 203 RSF RSF . D 3 RSF A 1 204 204 RSF RSF . E 3 RSF A 1 206 206 RSF RSF . F 3 RSF A 1 209 209 RSF RSF . G 3 RSF A 1 207 207 RSF RSF . H 3 RSF A 1 211 211 RSF RSF . I 3 RSF A 1 208 208 RSF RSF . J 3 RSF A 1 212 212 RSF RSF . K 3 RSF A 1 213 213 RSF RSF . L 3 RSF A 1 214 214 RSF RSF . M 3 RSF A 1 205 205 RSF RSF . N 3 RSF A 1 215 215 RSF RSF . O 3 RSF A 1 210 210 RSF RSF . P 4 MG A 1 592 592 MG MG . Q 5 CA A 1 591 591 CA CA . R 5 CA A 1 596 596 CA CA . S 5 CA A 1 593 593 CA CA . T 6 HOH A 1 301 301 HOH HOH . T 6 HOH A 2 302 302 HOH HOH . T 6 HOH A 3 303 303 HOH HOH . T 6 HOH A 4 304 304 HOH HOH . T 6 HOH A 5 305 305 HOH HOH . T 6 HOH A 6 306 306 HOH HOH . T 6 HOH A 7 307 307 HOH HOH . T 6 HOH A 8 308 308 HOH HOH . T 6 HOH A 9 309 309 HOH HOH . T 6 HOH A 10 310 310 HOH HOH . T 6 HOH A 11 311 311 HOH HOH . T 6 HOH A 12 312 312 HOH HOH . T 6 HOH A 13 313 313 HOH HOH . T 6 HOH A 14 314 314 HOH HOH . T 6 HOH A 15 315 315 HOH HOH . T 6 HOH A 16 316 316 HOH HOH . T 6 HOH A 17 317 317 HOH HOH . T 6 HOH A 18 318 318 HOH HOH . T 6 HOH A 19 319 319 HOH HOH . T 6 HOH A 20 320 320 HOH HOH . T 6 HOH A 21 321 321 HOH HOH . T 6 HOH A 22 322 322 HOH HOH . T 6 HOH A 23 323 323 HOH HOH . T 6 HOH A 24 324 324 HOH HOH . T 6 HOH A 25 325 325 HOH HOH . T 6 HOH A 26 326 326 HOH HOH . T 6 HOH A 27 333 333 HOH HOH . T 6 HOH A 28 338 338 HOH HOH . T 6 HOH A 29 342 342 HOH HOH . T 6 HOH A 30 343 343 HOH HOH . T 6 HOH A 31 344 344 HOH HOH . T 6 HOH A 32 346 346 HOH HOH . T 6 HOH A 33 383 383 HOH HOH . T 6 HOH A 34 389 389 HOH HOH . T 6 HOH A 35 391 391 HOH HOH . T 6 HOH A 36 392 392 HOH HOH . T 6 HOH A 37 394 394 HOH HOH . T 6 HOH A 38 409 409 HOH HOH . T 6 HOH A 39 422 422 HOH HOH . T 6 HOH A 40 431 431 HOH HOH . T 6 HOH A 41 438 438 HOH HOH . T 6 HOH A 42 440 440 HOH HOH . T 6 HOH A 43 472 472 HOH HOH . T 6 HOH A 44 525 525 HOH HOH . T 6 HOH A 45 526 526 HOH HOH . T 6 HOH A 46 527 527 HOH HOH . T 6 HOH A 47 528 528 HOH HOH . T 6 HOH A 48 529 529 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . B 2 -9.906 64.936 -66.435 1 21.83 ? PG GNP 190 A 1 HETATM 2 O O1G GNP . . . B 2 -8.932 64.598 -65.327 1 22.68 ? O1G GNP 190 A 1 HETATM 3 O O2G GNP . . . B 2 -10.848 65.991 -65.966 1 22.75 ? O2G GNP 190 A 1 HETATM 4 O O3G GNP . . . B 2 -10.568 63.651 -66.857 1 23.74 ? O3G GNP 190 A 1 HETATM 5 N N3B GNP . . . B 2 -9.024 65.546 -67.658 1 19.88 ? N3B GNP 190 A 1 HETATM 6 P PB GNP . . . B 2 -9.564 66.185 -69.041 1 19.42 ? PB GNP 190 A 1 HETATM 7 O O1B GNP . . . B 2 -9.907 65.129 -70.033 1 18.39 ? O1B GNP 190 A 1 HETATM 8 O O2B GNP . . . B 2 -10.639 67.161 -68.786 1 20.45 ? O2B GNP 190 A 1 HETATM 9 O O3A GNP . . . B 2 -8.356 66.961 -69.65 1 17.03 ? O3A GNP 190 A 1 HETATM 10 P PA GNP . . . B 2 -8.055 68.518 -69.634 1 19.36 ? PA GNP 190 A 1 HETATM 11 O O1A GNP . . . B 2 -9.011 69.229 -70.488 1 19.61 ? O1A GNP 190 A 1 HETATM 12 O O2A GNP . . . B 2 -7.931 68.969 -68.229 1 21.72 ? O2A GNP 190 A 1 HETATM 13 O O5' GNP . . . B 2 -6.649 68.661 -70.33 1 19.05 ? O5' GNP 190 A 1 HETATM 14 C C5' GNP . . . B 2 -5.515 67.992 -69.788 1 19.02 ? C5' GNP 190 A 1 HETATM 15 C C4' GNP . . . B 2 -4.229 68.579 -70.326 1 21.88 ? C4' GNP 190 A 1 HETATM 16 O O4' GNP . . . B 2 -4.163 68.352 -71.757 1 20.91 ? O4' GNP 190 A 1 HETATM 17 C C3' GNP . . . B 2 -4.104 70.093 -70.116 1 22.5 ? C3' GNP 190 A 1 HETATM 18 O O3' GNP . . . B 2 -2.756 70.418 -69.837 1 22.59 ? O3' GNP 190 A 1 HETATM 19 C C2' GNP . . . B 2 -4.548 70.656 -71.466 1 21.08 ? C2' GNP 190 A 1 HETATM 20 O O2' GNP . . . B 2 -3.971 71.916 -71.783 1 20.29 ? O2' GNP 190 A 1 HETATM 21 C C1' GNP . . . B 2 -4.012 69.581 -72.421 1 20.35 ? C1' GNP 190 A 1 HETATM 22 N N9 GNP . . . B 2 -4.798 69.524 -73.641 1 20.57 ? N9 GNP 190 A 1 HETATM 23 C C8 GNP . . . B 2 -6.151 69.351 -73.74 1 19.36 ? C8 GNP 190 A 1 HETATM 24 N N7 GNP . . . B 2 -6.576 69.372 -74.966 1 18.15 ? N7 GNP 190 A 1 HETATM 25 C C5 GNP . . . B 2 -5.436 69.559 -75.732 1 16.53 ? C5 GNP 190 A 1 HETATM 26 C C6 GNP . . . B 2 -5.272 69.679 -77.135 1 18.66 ? C6 GNP 190 A 1 HETATM 27 O O6 GNP . . . B 2 -6.129 69.596 -78.037 1 20.13 ? O6 GNP 190 A 1 HETATM 28 N N1 GNP . . . B 2 -3.93 69.871 -77.491 1 21.79 ? N1 GNP 190 A 1 HETATM 29 C C2 GNP . . . B 2 -2.89 69.969 -76.597 1 22.23 ? C2 GNP 190 A 1 HETATM 30 N N2 GNP . . . B 2 -1.668 70.174 -77.117 1 21.44 ? N2 GNP 190 A 1 HETATM 31 N N3 GNP . . . B 2 -3.034 69.861 -75.287 1 21 ? N3 GNP 190 A 1 HETATM 32 C C4 GNP . . . B 2 -4.327 69.664 -74.926 1 18.66 ? C4 GNP 190 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 32 #