data_3RSQ # _model_server_result.job_id VO13WtxyQdsb85ICZGzU0w _model_server_result.datetime_utc '2024-10-18 18:18:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3rsq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":492}' # _entry.id 3RSQ # _exptl.entry_id 3RSQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 665.441 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3RSQ _cell.length_a 122.189 _cell.length_b 122.189 _cell.length_c 155.439 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3RSQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 5 'crystal symmetry operation' 5_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 0 0 155.439 6 'crystal symmetry operation' 6_556 x,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 155.439 7 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 155.439 8 'crystal symmetry operation' 8_556 -y,-x,-z+1 0 -1 0 -1 0 0 0 0 -1 0 0 155.439 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 64 A ASN 52 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.853 ? metalc ? metalc2 A O ASP 126 A ASP 114 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.987 ? metalc ? metalc3 A OD2 ASP 126 A ASP 114 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.37 ? metalc ? metalc4 A O PHE 129 A PHE 117 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.75 ? metalc ? metalc5 A O VAL 158 A VAL 146 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.904 ? metalc ? metalc6 A O VAL 160 A VAL 148 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? metalc ? metalc7 A OG SER 162 A SER 150 1_555 C K K . A K 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.929 ? # _chem_comp.formula 'C21 H29 N7 O14 P2' _chem_comp.formula_weight 665.441 _chem_comp.id NAI _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NADH # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAI doub 237 n n PA O2A NAI sing 238 n n PA O5B NAI sing 239 n n PA O3 NAI sing 240 n n O2A HOA2 NAI sing 241 n n O5B C5B NAI sing 242 n n C5B C4B NAI sing 243 n n C5B H51A NAI sing 244 n n C5B H52A NAI sing 245 n n C4B O4B NAI sing 246 n n C4B C3B NAI sing 247 n n C4B H4B NAI sing 248 n n O4B C1B NAI sing 249 n n C3B O3B NAI sing 250 n n C3B C2B NAI sing 251 n n C3B H3B NAI sing 252 n n O3B HO3A NAI sing 253 n n C2B O2B NAI sing 254 n n C2B C1B NAI sing 255 n n C2B H2B NAI sing 256 n n O2B HO2A NAI sing 257 n n C1B N9A NAI sing 258 n n C1B H1B NAI sing 259 n n N9A C8A NAI sing 260 n y N9A C4A NAI sing 261 n y C8A N7A NAI doub 262 n y C8A H8A NAI sing 263 n n N7A C5A NAI sing 264 n y C5A C6A NAI sing 265 n y C5A C4A NAI doub 266 n y C6A N6A NAI sing 267 n n C6A N1A NAI doub 268 n y N6A H61A NAI sing 269 n n N6A H62A NAI sing 270 n n N1A C2A NAI sing 271 n y C2A N3A NAI doub 272 n y C2A H2A NAI sing 273 n n N3A C4A NAI sing 274 n y O3 PN NAI sing 275 n n PN O1N NAI sing 276 n n PN O2N NAI doub 277 n n PN O5D NAI sing 278 n n O1N HO1N NAI sing 279 n n O5D C5D NAI sing 280 n n C5D C4D NAI sing 281 n n C5D H51N NAI sing 282 n n C5D H52N NAI sing 283 n n C4D O4D NAI sing 284 n n C4D C3D NAI sing 285 n n C4D H4D NAI sing 286 n n O4D C1D NAI sing 287 n n C3D O3D NAI sing 288 n n C3D C2D NAI sing 289 n n C3D H3D NAI sing 290 n n O3D HO3N NAI sing 291 n n C2D O2D NAI sing 292 n n C2D C1D NAI sing 293 n n C2D H2D NAI sing 294 n n O2D HO2N NAI sing 295 n n C1D N1N NAI sing 296 n n C1D H1D NAI sing 297 n n N1N C2N NAI sing 298 n n N1N C6N NAI sing 299 n n C2N C3N NAI doub 300 n n C2N H2N NAI sing 301 n n C3N C7N NAI sing 302 n n C3N C4N NAI sing 303 n n C7N O7N NAI doub 304 n n C7N N7N NAI sing 305 n n N7N H71N NAI sing 306 n n N7N H72N NAI sing 307 n n C4N C5N NAI sing 308 n n C4N H4N NAI sing 309 n n C4N H42N NAI sing 310 n n C5N C6N NAI doub 311 n n C5N H5N NAI sing 312 n n C6N H6N NAI sing 313 n n # _atom_sites.entry_id 3RSQ _atom_sites.fract_transf_matrix[1][1] 0.008184 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008184 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006433 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 K A 1 491 491 K K . D 4 NAI A 1 492 492 NAI NAI . E 5 NAX A 1 493 493 NAX NAX . F 6 HOH A 1 494 494 HOH HOH . F 6 HOH A 2 495 495 HOH HOH . F 6 HOH A 3 496 496 HOH HOH . F 6 HOH A 4 497 497 HOH HOH . F 6 HOH A 5 498 498 HOH HOH . F 6 HOH A 6 499 499 HOH HOH . F 6 HOH A 7 500 500 HOH HOH . F 6 HOH A 8 501 501 HOH HOH . F 6 HOH A 9 502 502 HOH HOH . F 6 HOH A 10 503 503 HOH HOH . F 6 HOH A 11 504 504 HOH HOH . F 6 HOH A 12 505 505 HOH HOH . F 6 HOH A 13 506 506 HOH HOH . F 6 HOH A 14 507 507 HOH HOH . F 6 HOH A 15 508 508 HOH HOH . F 6 HOH A 16 509 509 HOH HOH . F 6 HOH A 17 510 510 HOH HOH . F 6 HOH A 18 511 511 HOH HOH . F 6 HOH A 19 512 512 HOH HOH . F 6 HOH A 20 513 513 HOH HOH . F 6 HOH A 21 514 514 HOH HOH . F 6 HOH A 22 515 515 HOH HOH . F 6 HOH A 23 516 516 HOH HOH . F 6 HOH A 24 517 517 HOH HOH . F 6 HOH A 25 518 518 HOH HOH . F 6 HOH A 26 519 519 HOH HOH . F 6 HOH A 27 520 520 HOH HOH . F 6 HOH A 28 521 521 HOH HOH . F 6 HOH A 29 522 522 HOH HOH . F 6 HOH A 30 523 523 HOH HOH . F 6 HOH A 31 524 524 HOH HOH . F 6 HOH A 32 525 525 HOH HOH . F 6 HOH A 33 526 526 HOH HOH . F 6 HOH A 34 527 527 HOH HOH . F 6 HOH A 35 528 528 HOH HOH . F 6 HOH A 36 529 529 HOH HOH . F 6 HOH A 37 530 530 HOH HOH . F 6 HOH A 38 531 531 HOH HOH . F 6 HOH A 39 532 532 HOH HOH . F 6 HOH A 40 533 533 HOH HOH . F 6 HOH A 41 534 534 HOH HOH . F 6 HOH A 42 535 535 HOH HOH . F 6 HOH A 43 536 536 HOH HOH . F 6 HOH A 44 537 537 HOH HOH . F 6 HOH A 45 538 538 HOH HOH . F 6 HOH A 46 539 539 HOH HOH . F 6 HOH A 47 540 540 HOH HOH . F 6 HOH A 48 541 541 HOH HOH . F 6 HOH A 49 542 542 HOH HOH . F 6 HOH A 50 543 543 HOH HOH . F 6 HOH A 51 544 544 HOH HOH . F 6 HOH A 52 545 545 HOH HOH . F 6 HOH A 53 546 546 HOH HOH . F 6 HOH A 54 547 547 HOH HOH . F 6 HOH A 55 548 548 HOH HOH . F 6 HOH A 56 549 549 HOH HOH . F 6 HOH A 57 550 550 HOH HOH . F 6 HOH A 58 551 551 HOH HOH . F 6 HOH A 59 552 552 HOH HOH . F 6 HOH A 60 553 553 HOH HOH . F 6 HOH A 61 554 554 HOH HOH . F 6 HOH A 62 555 555 HOH HOH . F 6 HOH A 63 556 556 HOH HOH . F 6 HOH A 64 557 557 HOH HOH . F 6 HOH A 65 558 558 HOH HOH . F 6 HOH A 66 559 559 HOH HOH . F 6 HOH A 67 560 560 HOH HOH . F 6 HOH A 68 561 561 HOH HOH . F 6 HOH A 69 562 562 HOH HOH . F 6 HOH A 70 563 563 HOH HOH . F 6 HOH A 71 564 564 HOH HOH . F 6 HOH A 72 565 565 HOH HOH . F 6 HOH A 73 566 566 HOH HOH . F 6 HOH A 74 567 567 HOH HOH . F 6 HOH A 75 568 568 HOH HOH . F 6 HOH A 76 569 569 HOH HOH . F 6 HOH A 77 570 570 HOH HOH . F 6 HOH A 78 571 571 HOH HOH . F 6 HOH A 79 572 572 HOH HOH . F 6 HOH A 80 573 573 HOH HOH . F 6 HOH A 81 574 574 HOH HOH . F 6 HOH A 82 575 575 HOH HOH . F 6 HOH A 83 576 576 HOH HOH . F 6 HOH A 84 577 577 HOH HOH . F 6 HOH A 85 578 578 HOH HOH . F 6 HOH A 86 579 579 HOH HOH . F 6 HOH A 87 580 580 HOH HOH . F 6 HOH A 88 581 581 HOH HOH . F 6 HOH A 89 582 582 HOH HOH . F 6 HOH A 90 583 583 HOH HOH . F 6 HOH A 91 584 584 HOH HOH . F 6 HOH A 92 585 585 HOH HOH . F 6 HOH A 93 586 586 HOH HOH . F 6 HOH A 94 587 587 HOH HOH . F 6 HOH A 95 588 588 HOH HOH . F 6 HOH A 96 589 589 HOH HOH . F 6 HOH A 97 590 590 HOH HOH . F 6 HOH A 98 591 591 HOH HOH . F 6 HOH A 99 592 592 HOH HOH . F 6 HOH A 100 593 593 HOH HOH . F 6 HOH A 101 594 594 HOH HOH . F 6 HOH A 102 595 595 HOH HOH . F 6 HOH A 103 596 596 HOH HOH . F 6 HOH A 104 597 597 HOH HOH . F 6 HOH A 105 598 598 HOH HOH . F 6 HOH A 106 599 599 HOH HOH . F 6 HOH A 107 600 600 HOH HOH . F 6 HOH A 108 601 601 HOH HOH . F 6 HOH A 109 602 602 HOH HOH . F 6 HOH A 110 603 603 HOH HOH . F 6 HOH A 111 604 604 HOH HOH . F 6 HOH A 112 605 605 HOH HOH . F 6 HOH A 113 606 606 HOH HOH . F 6 HOH A 114 607 607 HOH HOH . F 6 HOH A 115 608 608 HOH HOH . F 6 HOH A 116 609 609 HOH HOH . F 6 HOH A 117 610 610 HOH HOH . F 6 HOH A 118 611 611 HOH HOH . F 6 HOH A 119 612 612 HOH HOH . F 6 HOH A 120 613 613 HOH HOH . F 6 HOH A 121 614 614 HOH HOH . F 6 HOH A 122 615 615 HOH HOH . F 6 HOH A 123 616 616 HOH HOH . G 6 HOH B 1 8 8 HOH HOH . G 6 HOH B 2 108 108 HOH HOH . G 6 HOH B 3 109 109 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAI . . . D 4 11.775 51.594 62.149 1 38.12 ? PA NAI 492 A 1 HETATM 2 O O1A NAI . . . D 4 11.48 50.332 61.373 1 40.39 ? O1A NAI 492 A 1 HETATM 3 O O2A NAI . . . D 4 12.068 51.607 63.672 1 37.33 ? O2A NAI 492 A 1 HETATM 4 O O5B NAI . . . D 4 13.132 52.064 61.506 1 42.03 ? O5B NAI 492 A 1 HETATM 5 C C5B NAI . . . D 4 13.39 53.437 61.215 1 45.02 ? C5B NAI 492 A 1 HETATM 6 C C4B NAI . . . D 4 14.767 53.714 61.796 1 47.14 ? C4B NAI 492 A 1 HETATM 7 O O4B NAI . . . D 4 15.839 53.072 61.088 1 46.07 ? O4B NAI 492 A 1 HETATM 8 C C3B NAI . . . D 4 15.138 55.176 61.714 1 48.38 ? C3B NAI 492 A 1 HETATM 9 O O3B NAI . . . D 4 16.115 55.369 62.759 1 48.44 ? O3B NAI 492 A 1 HETATM 10 C C2B NAI . . . D 4 15.794 55.276 60.34 1 47.87 ? C2B NAI 492 A 1 HETATM 11 O O2B NAI . . . D 4 16.679 56.374 60.304 1 45.17 ? O2B NAI 492 A 1 HETATM 12 C C1B NAI . . . D 4 16.618 54.012 60.326 1 46.4 ? C1B NAI 492 A 1 HETATM 13 N N9A NAI . . . D 4 16.948 53.369 59.013 1 45.16 ? N9A NAI 492 A 1 HETATM 14 C C8A NAI . . . D 4 16.07 52.895 58.093 1 44.25 ? C8A NAI 492 A 1 HETATM 15 N N7A NAI . . . D 4 16.715 52.263 57.067 1 41.64 ? N7A NAI 492 A 1 HETATM 16 C C5A NAI . . . D 4 18.019 52.336 57.351 1 42.43 ? C5A NAI 492 A 1 HETATM 17 C C6A NAI . . . D 4 19.229 51.891 56.673 1 41.06 ? C6A NAI 492 A 1 HETATM 18 N N6A NAI . . . D 4 19.07 51.24 55.491 1 41.15 ? N6A NAI 492 A 1 HETATM 19 N N1A NAI . . . D 4 20.421 52.153 57.261 1 41.82 ? N1A NAI 492 A 1 HETATM 20 C C2A NAI . . . D 4 20.515 52.785 58.441 1 43.38 ? C2A NAI 492 A 1 HETATM 21 N N3A NAI . . . D 4 19.437 53.226 59.106 1 40.07 ? N3A NAI 492 A 1 HETATM 22 C C4A NAI . . . D 4 18.19 53.058 58.619 1 42.37 ? C4A NAI 492 A 1 HETATM 23 O O3 NAI . . . D 4 10.641 52.606 61.624 1 38.2 ? O3 NAI 492 A 1 HETATM 24 P PN NAI . . . D 4 9.512 53.395 62.465 1 36.53 ? PN NAI 492 A 1 HETATM 25 O O1N NAI . . . D 4 8.511 53.658 61.432 1 33.71 ? O1N NAI 492 A 1 HETATM 26 O O2N NAI . . . D 4 10.197 54.267 63.491 1 34.14 ? O2N NAI 492 A 1 HETATM 27 O O5D NAI . . . D 4 8.903 52.147 63.318 1 36.14 ? O5D NAI 492 A 1 HETATM 28 C C5D NAI . . . D 4 8.147 51.062 62.734 1 36.99 ? C5D NAI 492 A 1 HETATM 29 C C4D NAI . . . D 4 8.142 49.933 63.786 1 36.97 ? C4D NAI 492 A 1 HETATM 30 O O4D NAI . . . D 4 7.539 50.36 65.043 1 39.55 ? O4D NAI 492 A 1 HETATM 31 C C3D NAI . . . D 4 7.345 48.694 63.345 1 36.48 ? C3D NAI 492 A 1 HETATM 32 O O3D NAI . . . D 4 8.235 47.801 62.656 1 33.24 ? O3D NAI 492 A 1 HETATM 33 C C2D NAI . . . D 4 6.815 48.161 64.672 1 37.13 ? C2D NAI 492 A 1 HETATM 34 O O2D NAI . . . D 4 7.949 47.549 65.311 1 35.16 ? O2D NAI 492 A 1 HETATM 35 C C1D NAI . . . D 4 6.458 49.457 65.457 1 37.28 ? C1D NAI 492 A 1 HETATM 36 N N1N NAI . . . D 4 5.179 50.002 65.057 1 34.08 ? N1N NAI 492 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 36 #